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Rat connectome



Anterior group of the dorsal thalamus left


Abbreviation
ATN
Color       
Superior regionsDorsal thalamus

SynonymsAbbr.Language
Anterior nuclei of thalamus  
Anterior nuclear thalamic area  
Rostral level of dorsal thalamus  
Anterior group of the dorsal thalamusATNEng
Anterior nuclear groupANG 
Nuclei anteriores  
Anterior nucleus of thalamus  
Anterior group of nuclei Eng
Anterior pole thalamus Eng
Dorsal anterior group Eng
Anterior thalamic nuclei Eng
Nuclei anteriores thalami Eng
Anterior thalamic nucleus Eng
Anterior thalamic nuclei  
Anterior thalamus  
Anteroposterior thalamic nucleus Eng
Anterior nuclear area of the thalamus Eng
Anterior dorsal thalamic nucleus  

SubregionsSide
Anterodorsal thalamic nucleusleft
Anteromedial thalamic nucleusleft
Anteroventral thalamic nucleusleft
Borderline between anterior group of the dorsal thalamus and anterior ventral nucleus of the thalamusleft
Interoanterodorsal thalamic nucleusleft
Interoanteromedial thalamic nucleusleft
Lateral anterior nucleus of the thalamusleft
Borderline between the nucleus anteroventralis and anterodorsalisleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1.5
Superior colliculusipsiSC2
Ventral tegmental area A10ipsiVTA-0.5
Peripeduncular nucleusipsiPP2
Laterodorsal tegmental nucleusipsiLDTg2
Locus coeruleusipsiLC1
Dorsal raphe nucleusipsiDR2
Linear nucleus of the rapheipsiLIR-0.5
Rostral linear nucleus of the rapheipsiRLi-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1.5
Basal nucleus Meynert medial partipsiBmp2
Lateral preoptic areaipsiLPO2.5
Medial preoptic areaipsiMPA2.5
Medial preoptic nucleusipsiMPO2.5
Ventral tenia tectaipsiVTT3
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area dorsal to the supraoptic nucleusipsiLHdSO-0.5
Lateral hypothalamic area lateral to the supraoptic nucleusipsiLHLso-0.5
Lateral hypothalamic area dorsomedial to the supraoptic nucleusipsiLHdmSO-0.5
Dorsal hypothalamic areaipsiDA1
Mammillary bodyipsiCMAM2.5
Lateral mammillary nucleusipsiLM3
Premammillary nucleus dorsal partipsiPMD1.5
Supramammillar nucleusipsiSuM1
Anterior group of the dorsal thalamusipsiATN-0.5
Anteromedial thalamic nucleusipsiAM0.5
Anteroventral thalamic nucleusipsiAV1.5
Laterodorsal thalamic nucleusipsiLD0
Reticular thalamic nucleus rostral partipsiRtr2
Anteromedial most portion of the reticular thalamic nucleusipsiRtAM-0.5
Zona incertaipsiZI3
Superficial pineal glandipsiSPi2
Medial forebrain bundleipsimfb2
Basal nucleus anterior subdivisionipsiBncA2
Basal nucleus ventral divisonipsiBncV2
Dorsolateral part of the lateral nucleusipsiLaDL2
Ventromedial part of the lateral nucleusipsiLaVM2
Bed nucleus of the stria terminalisipsiBST1.5
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA-0.5
Posterolateral cortical nucleusipsiPLCo2
Subventricular nucleusipsiSV3
Rostral part of claustrumipsiRCl0
Globus pallidusipsiGP0
Accumbens nucleusipsiAc2
Central striatumipsiCPuce0
Rostral striatumipsiCPur-0.5
Cerebral cortexipsiCEC-0.5
HippocampusipsiHIPP0
Molecular cell layer of the hilus of the indusium griseum-anterior hippocampal continuation cortexipsiAHCCigM0
Subiculum dorsal partipsiSd-0.5
Subiculum ventral partipsiSv3
PresubiculumipsiPrS2.5
ParasubiculumipsiPaS2.5
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt1
Retrosplenial regionsipsiRS1
Retrosplenial cortexipsiRSCx-0.5
Retrosplenial agranular cortexipsiRSA0
Retrosplenial dysgranular cortexipsiRSdys-0.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Retrosplenial granular cortexipsiRSGra-0.5
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC-0.5
Cingulate cortex layer 1ipsiCgL13
Cingulate cortex layer 5ipsiCgL52
Cingulate cortex superficial layersipsiCgsLa2
Cingulumipsicg-2
NeocortexipsiNEOCX0
Lateral parietal association cortexipsiLPtA3
Medial parietal association cortexipsiMPtA3
Parietal cortex posterior areaipsiParP-1
Infragranular layers of the auditory cortexipsiAULi0
Perirhinal cortexipsiA350.5
Ectorhinal cortexipsiA360.5
Postrhinal cortexipsiPOR2
Prefrontal cortexipsiPFC-0.5
Medial prefrontal cortex posterior partipsimPFCp3
Visual regionsipsiVR0
Primary visual cortexipsiV11
Lateral extrastriate cortexipsiVISxL1
Medial extrastriate cortexipsiVISM3
Ventral lateral geniculate nucleusipsiVLG0.5
Ventral lateral geniculate nucleus magnocellular partipsiVLGMC0
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC0
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus intermediate partipsiLSI1.5
Central graycontraCG0
Superior colliculuscontraSC0
Peripeduncular nucleuscontraPP0
Laterodorsal tegmental nucleuscontraLDTg2
Locus coeruleuscontraLC0
Dorsal raphe nucleuscontraDR2
Nucleus of the horizontal limb of the diagonal bandcontraHDB0.5
Lateral preoptic areacontraLPO0
Medial preoptic areacontraMPA0
Medial preoptic nucleuscontraMPO0
Lateral hypothalamic areacontraLH0
Dorsal hypothalamic areacontraDA0
Lateral mammillary nucleuscontraLM2.5
Premammillary nucleus dorsal partcontraPMD0
Supramammillar nucleuscontraSuM0
Anterior group of the dorsal thalamuscontraATN1
Anteroventral thalamic nucleuscontraAV-0.5
Zona incertacontraZI0
Medial forebrain bundlecontramfb0
Bed nucleus of the stria terminaliscontraBST0.5
Subventricular nucleuscontraSV0
Subiculum ventral partcontraSv0
PresubiculumcontraPrS2
ParasubiculumcontraPaS2
Retrosplenial granular cortexcontraRSGra-0.5
Cingulate cortexcontraCg1.5
Infragranular layers of the auditory cortexcontraAULi0
Lateral septal nucleus intermediate partcontraLSI0

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Central gray pons partipsiCGP3
Central gray pons part caudal partipsiCGPc1
Central gray pons part medial partipsiCGPm1.5
Central gray pons part pars alphaipsiSGCa-0.5
Ventral portions of the central gray pons partipsiCGPv-0.5
Central gray dorsolateral partipsiCGDL-0.5
Periaqueductal grayipsiPAG-0.5
Ventral periaqueductal grayipsiVPAG-0.5
Medial pontine nucleusipsiMPoN3
Superior colliculusipsiSC2
Superior colliculus superficial layersipsiSCs-3
Superficial gray layer of the superior colliculusipsiSuG-3
Superior colliculus intermediate layersipsiSCi2
Intermediate gray layer of the superior colliculusipsiInG2
Tegmental areaipsiTGA-0.5
Mesopontine tegmental areaipsiTGAm2
Peduncularpontine nucleusipsiPPN-0.5
Substantia nigra A9ipsiSN2
Substantia nigra compact partipsiSNC-0.5
Ventral tegmental area A10ipsiVTA3
Laterodorsal tegmental nucleusipsiLDTg4
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg4
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1.5
Pedunculopontine tegmental nucleus subnucleus compactusipsiPPTgsc-1
Locus coeruleusipsiLC1
Reticulotegmental nucleus of the pons dorsomedial partipsiRtTgdm3
Medial reticular formationipsiRFm0
Mesencephalic reticular formationipsiMRF-3
Nucleus reticularis subcuneiformisipsiRScf1
Lateral reticular nucleusipsiLRt-0.5
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleus caudal partipsiSp5C0.5
Spinal trigeminal nucleus interpolar partipsiSp5I1.5
Spinal trigeminal nucleus oral partipsiSp5O0.5
Anterior part of spinal trigeminal nucleus oral partipsiSp5OA2
Dorsal raphe nucleus lateral wingipsiDRlw-0.5
Cuneate nucleusipsiCu1.5
GracileipsiGra1.5
Nucleus of BischoffipsiNBi0.5
Olivary pretectal nucleusipsiOPT3
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Mammillary bodyipsiCMAM3
Lateral mammillary nucleusipsiLM3
Medial mammillary nucleusipsiMMn2
Medial mammillary nucleus lateral partipsiML2
Medial mammillary nucleus medial partipsiMM2
Lateral part of pars medialis of the medial mammillary nucleusipsiMLM-0.5
Medial mammillary nucleus median partipsiMMnm-0.5
Medial mammillary nucleus posterior partipsiMMNp-0.5
Posterior mammillay nucleusipsiPMAM0.5
Premammillary nucleus dorsal partipsiPMD1
Supramammillar nucleusipsiSuM-0.5
Anterior group of the dorsal thalamusipsiATN-0.5
Anterodorsal thalamic nucleusipsiAD-0.5
Anteromedial thalamic nucleusipsiAM-0.5
Anteroventral thalamic nucleusipsiAV-0.5
Ventral part of the lateral geniculate complexipsiLGv-1
Centrolateral thalamic nucleusipsiCL1
Gelatinosus thalamic nucleusipsiG-2
Paracentral thalamic nucleusipsiPC1
Mediodorsal thalamic nucleus lateral partipsiMDL1
Mediodorsal thalamic nucleus rostral partipsiMDr1
Paratenial thalamic nucleusipsiPT1
Paratenial thalamic nucleus rostral partipsiPTr1
Paraventricular thalamic nucleus anterior partipsiPVA-0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-2
Intralaminar nucleiipsiILN1
Laterodorsal thalamic nucleusipsiLD-1
Ventral thalamusipsiVNT1
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus medial partipsiRtm1
Reticular thalamic nucleus rostral partipsiRtr2
Dorsal part of reticular thalamic nucleus rostral partipsiRtrD3
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF0.5
Nucleus of the optic tractipsiOT3
Pretectal regionipsiPRT3
Anterior pretectal nucleusipsiAPT3
Medial pretectal nucleusipsiMPT-0.5
Posterior pretectal nucleusipsiPPT3
RetinaipsiRET-0.5
Subthalamic nucleusipsiSTh-2
HippocampusipsiHIPP-0.5
Anterior hippocampal continuation deep pyramidal layeripsiAHCCdp-0.5
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA10
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
SubiculumipsiS-0.5
Subiculum dorsal partipsiSd2
Subiculum dorsal distal partipsiSdd1
Subiculum ventral partipsiSv3
PresubiculumipsiPrS-0.5
Presubiculum dorsal partipsiPrD2
Presubiculum layer 3ipsiPrSL32
Presubiculum layer 4ipsiPrSL42
Ventral parasubiculumipsiPaSV3
Lateral entorhinal cortex deep layer 5ipsiLEntL5b0
Medial entorhinal cortex deep layer 5ipsiMEntLyL5b0
Retrosplenial regionsipsiRS-0.5
Retrosplenial cortexipsiRSCx-0.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Retrosplenial granular a cortex layer 2ipsiRSGa22
Retrosplenial granular a cortex layer 3ipsiRSGa31
Retrosplenial granular b cortex caudal part layer 2ipsiRSGbcL22
Retrosplenial granular b cortex caudal part layer 3ipsiRSGbcL31
Retrosplenial granular b cortex layer 3ipsiRSGb31.5
Retrosplenial granular b cortex layer 4ipsiRSGb41
Retrosplenial granular b cortex superficial layersipsiRSGbsL0
Retrosplenial granular b cortex layer 1ipsiRSGb10.5
Retrosplenial granular b cortex layer 2ipsiRSGb22
Retrosplenial granular b cortex layer 5ipsiRSGb52
Retrosplenial granular b cortex layer 6ipsiRSGb63
Area 29aipsiA29a-0.5
Area 29bipsiA29b-0.5
Most caudal part of area 29dipsiA29dmC-0.5
Area 29d rostral partipsiA29dR-0.5
Retrosplenial granular cortex caudal part caudal partipsiRSGcc-0.5
Retrosplenial granular cortex caudal part rostral partipsiRSGcr-0.5
Cerebral cortex layer 1ipsiCCL10
Cingulate cortex layer 5ipsiCgL53
Cingulate cortex layer 6ipsiCgL63
Prelimbic cortexipsiPrL1
Prelimbic cortex dorsal part layer 6ipsiPrLdL6-0.5
Prelimbic cortex rostral part layer 3ipsiPrLrL30
Prelimbic cortex rostral part layer 5aipsiPrLrL5a0
Frontal cortex area 3 layer 5ipsiFr3L53
Frontal cortex area 3 layer 6ipsiFr3L63
Prefrontal cortex layer 5ipsiPFCL53
Prefrontal cortex layer 6ipsiPFCL63
Lateral agranular prefrontal cortex layer 5ipsiAGlL53
Lateral agranular prefrontal cortex layer 6ipsiAGlL63
Primary somatosensory cortex barrel field layer 5ipsiS1BF50
Primary somatosensory cortex layer 5ipsiS1L53
Primary somatosensory cortex layer 6ipsiS1L63
Secondary somatosensory cortex layer 5ipsiS2L53
Secondary somatosensory cortex layer 6ipsiS2L63
Primary visual cortexipsiV12
Primary visual cortex layer 5ipsiV1L53
Primary visual cortex layer 6ipsiV1L63
Secondary visual cortex medial area layer 5ipsiV2ML53
Secondary visual cortex medial area layer 6ipsiV2ML63
Secondary visual cortex lateral area layer 5ipsiV2LL53
Secondary visual cortex lateral area layer 6ipsiV2LL63
Lateral extrastriate cortexipsiVISxL1
Medial extrastriate cortexipsiVISM2
Medial orbital cortexipsiMO1
Ventral lateral geniculate nucleusipsiVLG2
Ventral lateral geniculate nucleus magnocellular partipsiVLGMC0
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC0
Spinal cord layers C1ipsiSCLC12
Spinal cord layers C2ipsiSCLC22
Spinal cord layers C3ipsiSCLC32
Spinal cord layers C4ipsiSCLC42
Spinal cord layers C5ipsiSCLC52
Spinal cord layers C6ipsiSCLC62
Spinal cord layers C7ipsiSCLC72
Spinal cord layers C8ipsiSCLC82
Central graycontraCG-0.5
Central gray pons partcontraCGP3
Central gray pons part caudal partcontraCGPc1
Central gray pons part medial partcontraCGPm1.5
Central gray pons part pars alphacontraSGCa-0.5
Ventral portions of the central gray pons partcontraCGPv-0.5
Central gray dorsolateral partcontraCGDL-0.5
Ventral periaqueductal graycontraVPAG-0.5
Medial pontine nucleuscontraMPoN1
Tegmental areacontraTGA-0.5
Mesopontine tegmental areacontraTGAm1
Substantia nigra A9contraSN2
Laterodorsal tegmental nucleuscontraLDTg3
Dorsal tegmental nucleuscontraDTg3
Dorsal tegmental nucleus lateral partcontraDLTN-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Pedunculopontine tegmental nucleus pars compactacontraPPNC1
Deep cerebellar nucleicontraDNC1
Interposed cerebellar nucleus intermediate partcontraIntim1
Medial cerebellar nucleus intermediate partcontraMedim1
Reticulotegmental nucleus of the pons dorsomedial partcontraRtTgdm1
Lateral reticular nucleuscontraLRt-0.5
Medullary reticular nucleuscontraMdD1
Principal sensory trigeminal nucleuscontraPr54
Spinal trigeminal nucleus caudal partcontraSp5C0.5
Spinal trigeminal nucleus interpolar partcontraSp5I3
Spinal trigeminal nucleus oral partcontraSp5O1
Dorsal raphe nucleuscontraDR-0.5
Dorsal column nucleicontraDCN1
Cuneate nucleuscontraCu3
GracilecontraGra3
Nucleus of BischoffcontraNBi0.5
Lateral mammillary nucleuscontraLM3
Medial mammillary nucleuscontraMMn2
Medial mammillary nucleus lateral partcontraML2
Posterior mammillay nucleuscontraPMAM-0.5
Anterior group of the dorsal thalamuscontraATN1
Anterodorsal thalamic nucleuscontraAD3
Reticular thalamic nucleuscontraRt2
Pretectal regioncontraPRT-0.5
RetinacontraRET1
Subiculum ventral partcontraSv3
Ventral parasubiculumcontraPaSV3
Prelimbic cortex rostral part layer 3contraPrLrL30
Prelimbic cortex rostral part layer 5acontraPrLrL5a0
Medial extrastriate cortexcontraVISM-0.5
Intergeniculate leafcontraIGL2
Cervical segment 1contraCS14
Spinal cord layers C1contraSCLC12.5
Cervical segment 2contraCS24
Spinal cord layers C2contraSCLC22.5
Cervical segment 3contraCS33
Spinal cord layers C3contraSCLC32.5
Cervical segment 4contraCS42
Spinal cord layers C4contraSCLC42.5
Cervical segment 5contraCS52
Spinal cord layers C5contraSCLC52.5
Cervical segment 6contraCS61
Spinal cord layers C6contraSCLC62.5
Cervical segment 7contraCS72
Spinal cord layers C7contraSCLC72.5
Cervical segment 8contraCS82
Spinal cord layers C8contraSCLC82.5
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT40.5
Thoracal segment 5contraT50.5
Thoracal segment 6contraT60.5
Thoracal segment 7contraT71
Thoracal segment 8contraT80.5
Thoracal segment 9contraT92
Thoracal segment 10contraT102
Thoracal segment 11contraT112
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL13
Lumbar segment 2contraL23
Lumbar segment 3contraL33
Lumbar segment 4contraL42
Lumbar segment 5contraL52
Lumbar segment 6contraL63
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Coccygeal segment 1contraCo11
Coccygeal segment 2contraCo21
Coccygeal segment 3contraCo31

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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