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Rat connectome



Pons left


Abbreviation
P
Color       
Superior regionsMetencephalon

SynonymsAbbr.Language
N. pons  
Pontine region  
PonsPEng
Pontine nuclei  

SubregionsSide
A3 noradrenaline arealeft
A4 noradrenaline cellsleft
A5 noradrenaline cellsleft
A7 noradrenaline cellsleft
Barringtons nucleusleft
Basilar ponsleft
Commissure of the lateral lemniscusleft
Decussatio of the superior cerebellar peduncleleft
Decussation of the trapezoid bodyleft
Dorsolateral ponsleft
Dorsomedial pontine region near the midlineleft
Extreme dorsomedial region of the ponsleft
Intermediate interstitial nucleus of the medial longitudinal fasciculusleft
Interval between the dorsal surface of the cerebellar peduncle and the medial lemniscusleft
Lateral ponsleft
Lateral pontine nucleusleft
Lateral ventral ponsleft
Medial area of ponsleft
Medial rostroventrolateral medullaleft
Locus coeruleusleft
Nucleus incertusleft
Nucleus Oleft
Nucleus of Probsts bundleleft
Parapyramidal nucleusleft
Peduncular part of the ponsleft
Pons caudal partleft
Pons dorsal partleft
Pons medial partleft
Pons oral partleft
Pons rostral partleft
Pons ventral partleft
Pons ventrolateral partleft
Pontine micturition centerleft
Pontine medullary junctionleft
Pontine periventricular grayleft
Pontine sublaterodorsal nucleusleft
Pontomesencephalic grayleft
Pontomesencephalic junctionleft
Pontomesencephalotegmental complexleft
Precerebellar nucleileft
Prepositus nucleusleft
Probst bundleleft
Region between the medial lemniscus and the cerebral peduncle LPonsleft
Region between locus coeruleus and mesencephalic trigeminal nucleusleft
Region surrounding the reticular formationleft
Reticular systemleft
Rhabdoid nucleusleft
Sphenoid nucleusleft
Transverse fibers of the ponsleft
Trapezoid bodyleft
Triangular nucleus lateral lemniscusleft
Ventral border of the ponsleft
Ventrointermediate position of the ponsleft
Dorsolateral surface of the ponsleft
Pons ventromedialleft
Pons dorsomedialleft
Gigantocellular reticular and nucleus raphe obscurus border regionleft
Curved lamellae represents the caudal whiskersleft
Border between the locus coeruleus and Barrington nucleusleft
Pons ventral to the cerebral peduncleleft
Pons ventrolateral to the cerebral peduncleleft
Pons medial to the cerebral peduncleleft
Pons dorsal to the cerebral peduncleleft
Anteroposterior extent of pontine nucleileft
Dorsoventral extent of pontine nucleileft
Mediolateral pontine nucleileft
Rostromedial ponsleft
Nucleus corporis pontobulbarisleft
Subcoeruleus nucleusleft
Pontine zone hleft
Pontine zone mleft
Cell groups of the paramedian tractleft
Nucleus of the Probst bundleleft
Middle cerebellar ponsleft
Undefined pontine nucleusleft

Output to

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG3
Lateral periaqueductal grayipsiLPAG3
Superior colliculusipsiSC1
Ventral tegmental area A10 lateral partipsiVTAL1
CerebellumipsiCERE3
Cerebellar cortexipsiCERC-0.5
Cerebellar hemisphereipsiCEREBH3
Lateral part of the cerebellar cortexipsiCERCL3
ParaflocculusipsiPFl3
Dorsal paraflocculusipsiDPFl-0.5
Lateral part of the dorsal paraflocculusipsiDPFlL-0.5
Medial dorsal paraflocculusipsiDPFlM-0.5
Centromedial dorsal paraflocculusipsiDPFlCM-0.5
Centrolateral dorsal paraflocculusipsiDPFlCL-0.5
Rostromedial dorsal paraflocculusipsiDPFlRM-0.5
Rostrocentral dorsal paraflocculusipsiDPFlRC-0.5
Rostrolateral dorsal paraflocculusipsiDPFlRL-0.5
Caudolateral dorsal paraflocculusipsiDPFlCaL-0.5
Paraflocculus ventral partipsiPFlv-0.5
Lateral part of the ventral paraflocculusipsiPFlvL-0.5
Medial ventral paraflocculusipsiPFlvM-0.5
Central ventral paraflocculusipsiPFlvCe-0.5
Rostrolateral paraflocculus ventral partipsiPFlvRL-0.5
Paravermis areaipsiCERCPA3
Intermediate portion of crus 1ipsiiCrus13
Ansiform lobule crus 2 intermedite areaipsiiCrus23
Copula of the pyramis C1 zoneipsiCopC13
VermisipsiVERM3
Cerebellar lobule 10ipsiCERL101
Medial cerebellar nucleusipsiMed3
FlocculusipsiFl-0.5
Medial part of the flocculusipsiFlM0
Rostrocentral flocculusipsiFlRC0
Ventrolateral flocculusipsiFlVL-0.5
Rostromedial flocculusipsiFlRM-0.5
Rostrodorsal flocculusipsiFlRD0
Dorsolateral flocculusipsiFlDL-0.5
Rostroventral flocculusipsiFlRV-0.5
Caudolateral flocculusipsiFlCaL-0.5
Dorsocentral flocculusipsiFlDC-0.5
Caudodorsomedial flocculusipsiFlCDM-0.5
Rostroventromedial flocculusipsiFlRVM0
Rostrodorsomedial flocculusipsiFlRDM0
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB-0.5
Hypoglossal nucleusipsi12S-0.5
Cochlear nucleusipsiCON3
Dorsal cochlear nucleusipsiDC0
Dorsal cochlear nucleus layer 2 granular cellsipsiDCGr3
Granule cell domains of the cochlear nucleusipsiGcCON1
Magnocellular core regions of the cochlear nucleusipsiVCmagC0
Magnocellular ventral cochlear nucleusipsiMagVC3
Magnocellular core of the dorsal cochlear nucleusipsiDCmagC3
Nucleus of the solitary tract central partipsiSolCe-0.5
Raphe pallidus nucleusipsiRPa2
Retrotrapezoid nucleusipsiRTN0.5
Rostral ventral respiratory groupipsiRVRG1
Lateral hypothalamic nucleusipsiLHN0
Anterior hypothalamic nucleusipsiAHn0
Central paraventricular hypothalamic nucleusipsiPaCe3
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Intermediate acoustic striaipsiinas-2
Cingulate cortex area 1ipsiCg11.5
Prelimbic cortexipsiPrL1.5
Somatomotoric regionsipsiSMR-0.5
Primary somatosensory cortex barrel fieldipsiS1BF3
Primary somatosensory cortex forelimb regionipsiS1FL3
Medial orbital cortexipsiMO1.5
Interpeduncular nucleus caudal subnucleusipsiIPC-0.5
Ventral part of the dorsal lateral interpeduncular nucleusipsiIPRvdL-0.5
Interpeduncular nucleus intermediate subnucleusipsiIPI-0.5
Interpeduncular nucleus lateral subnucleusipsiIPL-0.5
Caudoventral part of the rostral lateral interpeduncular nucleusipsiIPcvRL-0.5
Spinal cordipsiMES-0.5
Cervical segmentsipsiCSeg-0.5
Intermediolateral cell column T5ipsiIMLT50
Intermediolateral cell column T6ipsiIMLT60
Intermediolateral cell column T7ipsiIMLT70
Intermediolateral cell column T8ipsiIMLT80
Intermediolateral cell column T9ipsiIMLT90
Intermediolateral cell column T10ipsiIMLT100
Superior colliculuscontraSC1
CerebellumcontraCERE-0.5
Cerebellar cortexcontraCERC-0.5
Lateral part of the dorsal paraflocculuscontraDPFlL-0.5
Medial dorsal paraflocculuscontraDPFlM-0.5
Centromedial dorsal paraflocculuscontraDPFlCM-0.5
Centrolateral dorsal paraflocculuscontraDPFlCL-0.5
Rostromedial dorsal paraflocculuscontraDPFlRM-0.5
Rostrocentral dorsal paraflocculuscontraDPFlRC-0.5
Rostrolateral dorsal paraflocculuscontraDPFlRL-0.5
Caudolateral dorsal paraflocculuscontraDPFlCaL-0.5
Paraflocculus ventral partcontraPFlv-0.5
Lateral part of the ventral paraflocculuscontraPFlvL-0.5
Medial ventral paraflocculuscontraPFlvM-0.5
Central ventral paraflocculuscontraPFlvCe-0.5
Rostrolateral paraflocculus ventral partcontraPFlvRL-0.5
FlocculuscontraFl-0.5
Medial part of the flocculuscontraFlM0
Rostrocentral flocculuscontraFlRC0
Ventrolateral flocculuscontraFlVL-0.5
Rostromedial flocculuscontraFlRM-0.5
Rostrodorsal flocculuscontraFlRD-0.5
Dorsolateral flocculuscontraFlDL-0.5
Rostroventral flocculuscontraFlRV-0.5
Caudolateral flocculuscontraFlCaL-0.5
Dorsocentral flocculuscontraFlDC-0.5
Caudodorsomedial flocculuscontraFlCDM-0.5
Rostroventromedial flocculuscontraFlRVM-0.5
Rostrodorsomedial flocculuscontraFlRDM-0.5
Pontine reticular nucleuscontraPRN-0.5
Parabrachial nucleuscontraPB-0.5
Cochlear nucleuscontraCON1.5
Granule cell domains of the cochlear nucleuscontraGcCON3
Magnocellular ventral cochlear nucleuscontraMagVC3
Magnocellular core of the dorsal cochlear nucleuscontraDCmagC3
Nucleus of the solitary tract central partcontraSolCe-0.5
Raphe pallidus nucleuscontraRPa2
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Primary somatosensory cortex barrel fieldcontraS1BF0
Primary somatosensory cortex forelimb regioncontraS1FL1
Liver sideipsiOrgsLivs1
OvaryipsiOrgOvar-10

Input from

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG3
Lateral periaqueductal grayipsiLPAG3
Ventromedial periaqueductal grayipsiVMPAG-2
Inferior colliculusipsiICOL-0.5
Superior colliculusipsiSC-0.5
Superior colliculus deep layersipsiSCd3
Ventral tegmental tailipsiVTTa0.5
Pedunculopontine tegmental nucleusipsiPPTg1
Edinger Westphal nucleusipsiEW1
Pontine grayipsiPG3
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Hypoglossal nucleusipsi12S-0.5
Dorsomedial portion of the spinal trigeminal nucleus oral partipsiSp5ODM-0.5
Cochlear nucleusipsiCON-0.5
Anteroventral cochlear nucleusipsiAVCON1
Posteroventral cochlear nucleusipsiPVCON1
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tract intermediate partipsiSolIM3
Nucleus of the solitary tract interstitial partipsiSoli3
Medial part of the lateral subnucleus of the solitary tractipsiSolLMe3
Nucleus of the solitary tract medial partipsiSolM3
Dorsal raphe nucleus caudal partipsiDRC1
Median raphe nucleusipsiMnR0
Rostral level of the caudal ventrolateral medullaipsiCVLMR0
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Basal nucleus MeynertipsiB-0.5
Magnocellular preoptic nucleusipsiMCPO2
Dorsomedial hypothalamic nucleusipsiDMHy0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0.5
Lateral hypothalamic area dorsal partipsiLHd0
Lateral hypothalamic area ventral partipsiLHAvp0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Periventricular zoneipsiPVZ0
Incerto hypothalamic areaipsiicHYPO-0.5
Medial part of the caudal perifornical areaipsiPeFCM0.5
Lateral part of the caudal perifornical areaipsiPeFCL0.5
ThalamusipsiT-2
Reuniens thalamic nucleusipsiRe-3
Zona incertaipsiZI3
Anterior pretectal nucleus caudal partipsiAPTca-0.5
Anterior pretectal nucleus rostral partipsiAPTro-0.5
Rostrodorsal anterior pretectal nucleusipsiRDAPT-0.5
Rostroventral anterior pretectal nucleusipsiRVAPT-0.5
Caudoventral anterior pretectal nucleusipsiCVAPT-0.5
Cerebral peduncle basal partipsicp-2
Medial lemniscusipsiml-2
Medial terminal nucleus of the accessory optic tractipsiMT-0.5
Entorhinal cortexipsiEnt-0.5
Cingulate cortexipsiCg-0.5
Anterior cingulate cortex layer 1ipsiACCL1-2
Anterior cingulate cortex layer 5ipsiACCL53
Frontal association cortex layer 1ipsiFrALL1-2
Frontal association cortex layer 2ipsiFrALL2-2
Frontal association cortex layer 3ipsiFrALL3-2
Frontal association cortex layer 5aipsiFrALL5a2
Frontal association cortex layer 5bipsiFrALL5b3
Parietal association cortex layer 5ipsiParPLa53
Temporal association area 3ipsiTe3-0.5
Temporal association cortex 1ipsiTeA-0.5
Temporal cortex layer 5ipsiTELaL53
Perirhinal cortexipsiA35-0.5
Somatomotoric regionsipsiSMR-0.5
Motoric regionsipsiM3
Lateral agranular prefrontal cortexipsiAGl-0.5
Medial prefrontal cortexipsimPFC-0.5
Medial prefrontal cortex layer 5ipsimPFCL53
Medial prefrontal cortex layer 6ipsimPFCL63
Medial agranular prefrontal cortex layer 1ipsiAGmL1-2
Medial agranular prefrontal cortex layer 5ipsiAGmL53
Sensory regionsipsiSR3
Primary somatosensory cortexipsiS11
Primary somatosensory cortex barrel fieldipsiS1BF2
Posteromedial barrel subfield C2ipsiPMBSFC24
Posteromedial barrel subfield D1ipsiPMBSFD14
Posteromedial barrel subfield D2ipsiPMBSFD24
Posteromedial barrel subfield D5ipsiPMBSFD54
Primary somatosensory cortex barrel field layer 5ipsiS1BF5-0.5
Primary somatosensory cortex layersipsiS1L1
Primary somatosensory cortex layer 5 bipsiS1L5b-0.5
Primary somatosensory cortex forelimb regionipsiS1FL2
Primary somatosensory cortex hindlimb regionipsiS1HL2
Somatosensory cortex layer 5bipsiSRL5b3
Visual regionsipsiVR3
Primary visual cortexipsiV1-0.5
Primary visual cortex lateral partipsiV1La-0.5
Primary visual cortex layer 5ipsiV1L51
Primary visual cortex layer 5 bipsiV1L5b-0.5
Visual regions layer 1ipsiVRL10
Visual regions layer 2ipsiVRL20
Visual regions layer 3ipsiVRL30
Visual regions layer 4ipsiVRL40
Visual regions layer 5ipsiVRL53
Visual regions layer 6ipsiVRL60
Secondary visual cortexipsiV2-0.5
Neocortex layer 5ipsiNEOCXL5-0.5
Ventral lateral geniculate nucleusipsiVLG-0.5
Ventral lateral geniculate nucleus lateral partipsiVLGl-0.5
Ependymocytes of 4th ventricleipsi4Vepc-0.5
Spinal cordipsiMES-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL2-0.5
Dorsal periaqueductal graycontraDPAG0
Lateral periaqueductal graycontraLPAG0
Superior colliculuscontraSC-0.5
Superior colliculus deep layerscontraSCd0
Interposed cerebellar nucleicontraICN2
Lateral cerebellar nucleuscontraCERL2
Gigantocellular reticular nucleuscontraGi-0.5
Anteroventral cochlear nucleuscontraAVCON2
Posteroventral cochlear nucleuscontraPVCON2
Lateral vestibular nucleuscontraLVe-0.5
Nucleus of the solitary tract intermediate partcontraSolIM3
Nucleus of the solitary tract interstitial partcontraSoli3
Medial part of the lateral subnucleus of the solitary tractcontraSolLMe3
Nucleus of the solitary tract medial partcontraSolM3
Dorsal paragigantocellular nucleuscontraDPGi-0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB1
Nucleus of the vertical limb of the diagonal bandcontraVDB1
Magnocellular preoptic nucleuscontraMCPO1
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic area dorsal partcontraLHd0
Lateral hypothalamic area ventral partcontraLHAvp0
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0
Posterior hypothalamic nucleus caudal partcontraPHCa0
Posterior hypothalamic nucleus rostral partcontraPHRo0
Periventricular zonecontraPVZ0
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Anterior pretectal nucleus caudal partcontraAPTca-0.5
Anterior pretectal nucleus rostral partcontraAPTro-0.5
Rostrodorsal anterior pretectal nucleuscontraRDAPT-0.5
Rostroventral anterior pretectal nucleuscontraRVAPT-0.5
Caudoventral anterior pretectal nucleuscontraCVAPT-0.5
Frontal cortex area 2contraFr2-0.5
Parietal cortex ventral areacontraParV-0.5
Auditory regionscontraAU3
Perirhinal cortexcontraA35-0.5
Prefrontal cortex dorsolateral partcontraPFCd3
Somatomotoric regionscontraSMR-0.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Forelimb motor cortexcontraFMCx-0.5
Whiskers motor cortexcontraWMCx-0.5
Lateral part of the lateral agranular prefrontal cortexcontraAGlLat-0.5
Medial prefrontal cortexcontramPFC-0.5
Primary somatosensory cortexcontraS10.5
Primary somatosensory cortex barrel fieldcontraS1BF-0.5
Primary somatosensory cortex face regioncontraS1FR-0.5
Secondary somatosensory cortexcontraS2-0.5
Medial dysgranular cortexcontraMdyC-0.5
Lateral spinal nucleuscontraMESLn2
Spinal cord lamina 5contraMESL52
Spinal cord lamina 10contraMESL102
Spinal cord lamina 1contraMESL12
Hindpaw skinipsiOrgHPS-0.5
Hindpaw skincontraOrgHPS-0.5
ForelimbcontraMuscFo-0.5
HindlimbcontraMuscHi-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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