University of Rostock

Department of Anatomy

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Rat connectome



Striatum left


Abbreviation
STR
Color       
Superior regionsCorpus striatum

SynonymsAbbr.Language
Paleostriatum  
StriatumSTREng

SubregionsSide
Accumbens nucleusleft
Caudate putamenleft
Fundus of the striatumleft
Marginal Divisionleft
Reticulostriatal nucleusleft
Striatal cell bridgesleft
Cell bridges extending from the accumbens nucleus to the olfactory tubercleleft
Subventricular zoneleft

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic part ventrolateral regionipsiCGMvL-0.5
Superior colliculusipsiSC-0.5
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC1
Substantia nigra compact part medial tieripsiSNCM2
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part medial tieripsiSNRm2
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Substantia innominataipsiSI0.5
Magnocellular preoptic nucleusipsiMCPO0.5
Parafascicular thalamic nucleusipsiPF3
Posterior thalamic nuclear groupipsiPo3
Globus pallidusipsiGP3
Lateral globus pallidusipsiLGP-0.5
Medial globus pallidusipsiMGP3
Prefrontal cortexipsiPFC-0.5
Frontoparietal somatosensory cortexipsifpSR-0.5
Subthalamic nucleuscontraSTh-1
Frontal association cortexcontraFrA-2
Femoral musclesipsiMuscFem-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Red nucleusipsiR1
Peduncularpontine nucleusipsiPPN3
Substantia nigra A9ipsiSN4
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular part posterior partipsiSNRP4
Retrorubral nucleusipsiRR-1
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Reticular systemipsiRF-0.5
Peribrachial regionipsiPBR1
Dorsal raphe nucleusipsiDR3
Medial raphe nucleusipsiMeR-0.5
Posterior raphe nucleusipsiPRAN3
Basal forebrainipsiBAF-0.5
Tuberomammillary nucleusipsiTuM2
Tuberomammillary nucleus lateral partipsiTuML1
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH2
Mammillary bodyipsiCMAM-0.5
ThalamusipsiT4
Anterodorsal thalamic nucleus middle partipsiADmi0.5
Anterodorsal thalamic nucleus rostrodorsal tipipsiADrd0.5
Anterodorsal thalamic nucleus rostroventral tipipsiADrv0.5
Central medial thalamic nucleusipsiCM1.5
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF3
Parafascicular thalamic nucleus lateral partipsiPFL-0.5
Parafascicular thalamic nucleus medial partipsiPFM-0.5
Rhomboid thalamic nucleusipsiRh-0.5
Posterior thalamic nuclear groupipsiPo3
Posterior thalamic nuclear group anterior partipsiPoA-10
Posterior thalamic nuclear group posterior partipsiPoP-10
Intermediodorsal thalamic nucleusipsiIMD0.5
Mediodorsal thalamic nucleus medial partipsiMDM1.5
Paraventricular thalamic nucleusipsiPV0.5
Reuniens thalamic nucleusipsiRe-0.5
Ventromedial thalamic nucleusipsiVM2
Intralaminar nuclei lateral partipsiILNL-0.5
Posterior intralaminar thalamic nucleusipsiPIL3
Parafascicular centre-median complexipsiPFCM2
Rostral intralaminar nucleusipsirILN1.5
Lateral thalamic nuclear groupipsiLTNG0
Medial thalamic zoneipsiMTZ-0.5
Posterior groupipsiPTG0
Ventral thalamusipsiVNT-0.5
Amygdaloid complexipsiAC1.5
Basolateral amygdaloid nucleusipsiBL0.5
Basolateral nucleus caudal partipsiBLCP1
Basolateral nucleus lateral partipsiBLLP-1
Basolateral nucleus medial portionipsiBLmp-1
Basolateral nucleus rostral partipsiBLRP-1
Basomedial amygdaloid nucleusipsiBM0.5
Posterior basomedial nucleusipsiBMP-1
Lateral amygdaloid nucleusipsiLA0.5
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Central amygdaloid nucleus medial divisionipsiCeM-2
Cortical amygdaloid nucleusipsiCAn-1
Medial amygdaloid nucleusipsiMe-1
ClaustrumipsiCl-0.5
Globus pallidusipsiGP4
Medial globus pallidusipsiMGP-0.5
Caudate putamenipsiCPu4
Subthalamic nucleusipsiSTh2
HippocampusipsiHIPP4
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus anterior partipsiCA1A-0.5
Field CA1 of hippocampus posterior partipsiCA1P-0.5
Field CA2 of hippocampusipsiCA2-0.5
Field CA3 of hippocampusipsiCA3-0.5
SubiculumipsiS-0.5
Pyramidal cell layer of the hippocampusipsiPy-0.5
Cerebral cortex layer 4ipsiCCL4-10
Cerebral cortex layer 5ipsiCCL5-10
NeocortexipsiNEOCX4
Frontal association cortexipsiFrA-0.5
Frontal association cortex layer 1ipsiFrALL1-2
Frontal association cortex layer 2ipsiFrALL2-2
Frontal association cortex layer 3ipsiFrALL3-2
Frontal association cortex layer 5aipsiFrALL5a1
Frontal association cortex layer 5bipsiFrALL5b2
Frontal cortex area 2ipsiFr22
Parietal association cortex layer 3ipsiParPLa31.5
Parietal association cortex layer 4ipsiParPLa41.5
Parietal association cortex layer 5ipsiParPLa53
Parietal association cortex layer 6ipsiParPLa62.5
Parietal association cortex layer 1ipsiParPLa10
Parietal association cortex layer 2ipsiParPLa21.5
Parietal cortex area 1ipsiPar1-0.5
Perirhinal cortex layer 1ipsiA35L10
Perirhinal cortex layer 2ipsiA35L21
Perirhinal cortex layer 3ipsiA35L31
Perirhinal cortex layer 4ipsiA35L42
Perirhinal cortex layer 5ipsiA35L52.5
Perirhinal cortex layer 6ipsiA35L63
Prefrontal cortexipsiPFC2
Lateral agranular prefrontal cortexipsiAGl3
Whiskers motor cortex layer 5ipsiWMCxL5-2
Whiskers motor cortex layer 6ipsiWMCxL6-2
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm2.5
Medial agranular prefrontal cortex layer 3ipsiAGmL33
Medial agranular prefrontal cortex layer 5 aipsiAGmL5a3
Medial agranular prefrontal cortex layer 5 bipsiAGmL5b-0.5
Medial agranular prefrontal cortex layer 6ipsiAGmL6-0.5
Primary somatosensory cortexipsiS10.5
Primary somatosensory cortex barrel field layer 1ipsiS1BF10
Primary somatosensory cortex barrel field layer 2ipsiS1BF20
Primary somatosensory cortex barrel field layer 3ipsiS1BF30
Primary somatosensory cortex barrel field layer 4ipsiS1BF40
Primary somatosensory cortex barrel field layer 5ipsiS1BF52
Primary somatosensory cortex barrel field layer 6ipsiS1BF60
Primary somatosensory cortex forelimb regionipsiS1FL-0.5
Primary somatosensory cortex hindlimb regionipsiS1HL-0.5
Secondary somatosensory cortexipsiS22
Medial geniculate nucleusipsiMG-0.5
Medial geniculate nucleus medial partipsiMGM3
Central nucleus of the medial geniculate bodyipsiCMG1
Lateral spinal nucleusipsiMESLn2
Spinal cord lamina 10ipsiMESL102
Spinal cord lamina 5ipsiMESL52
Spinal cord lamina 1ipsiMESL1-0.5
Peduncularpontine nucleuscontraPPN1
Substantia nigra compact partcontraSNC2
Substantia nigra reticular partcontraSNR2
Pedunculopontine tegmental nucleus pars compactacontraPPNC1
Pedunculopontine tegmental nucleus pars dissipatacontraPPNd1
Peribrachial regioncontraPBR1
Tuberomammillary nucleuscontraTuM1
Tuberomammillary nucleus lateral partcontraTuML1
ThalamuscontraT4
Dorsal bank of rhinal fissurecontraDBrf-1
Amygdaloid complexcontraAC-2
Globus palliduscontraGP3
HippocampuscontraHIPP2
Anterior cingulate cortex lower part of layer 2contraACCLL21.5
Anterior cingulate cortex lower part of layer 3contraACCLL31.5
Anterior cingulate cortex layer 1contraACCL1-2
Anterior cingulate cortex layer 5contraACCL53
NeocortexcontraNEOCX4
Frontal association cortex layer 1contraFrALL1-2
Frontal association cortex layer 2contraFrALL2-2
Frontal association cortex layer 3contraFrALL3-2
Frontal association cortex layer 5acontraFrALL5a1
Frontal association cortex layer 5bcontraFrALL5b2
Parietal cortex area 1contraPar11
Lateral agranular prefrontal cortexcontraAGl3
Whiskers motor cortex layer 5contraWMCxL51.5
Whiskers motor cortex layer 6contraWMCxL61.5
Medial agranular prefrontal cortexcontraAGm2.5
Medial agranular prefrontal cortex layer 1contraAGmL1-2
Medial agranular prefrontal cortex lower part of layer 2contraAGmLL21.5
Medial agranular prefrontal cortex layer 3contraAGmL3-0.5
Medial agranular prefrontal cortex lower part of layer 3contraAGmLL31.5
Medial agranular prefrontal cortex layer 5contraAGmL53
Medial agranular prefrontal cortex layer 5 acontraAGmL5a-0.5
Primary somatosensory cortex barrel field layer 1contraS1BF10
Primary somatosensory cortex barrel field layer 2contraS1BF20
Primary somatosensory cortex barrel field layer 3contraS1BF30
Primary somatosensory cortex barrel field layer 4contraS1BF40
Primary somatosensory cortex barrel field layer 5contraS1BF51
Primary somatosensory cortex barrel field layer 6contraS1BF60
Primary somatosensory cortex forelimb regioncontraS1FL2
Primary somatosensory cortex hindlimb regioncontraS1HL2
Visual regionscontraVR0
Lateral spinal nucleuscontraMESLn2
Spinal cord lamina 5contraMESL52
Spinal cord lamina 10contraMESL102
Spinal cord lamina 1contraMESL12

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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