University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Neocortex layers 5-6 left


Abbreviation
NEOCXL56
Color       
Superior regionsNeocortex layers

SynonymsAbbr.Language
Neocortex layers 5-6NEOCXL56 
Neocortex deep layersNEOCXdLEng

SubregionsSide
Neocortex layers 5-6 pyramidal cellsleft
Neocortex layer 5left
Neocortex layer 6left

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC0
Basal forebrainipsiBAF-0.5
Substantia innominataipsiSI-0.5
Magnocellular nucleus of the lateral hypothalamusipsiMCLH-0.5
ThalamusipsiT-0.5
ClaustrumipsiCl-0.5
Globus pallidusipsiGP-0.5
Caudate putamenipsiCPu0.5
Medial striatumipsiCPum-0.5
Ventricular surface of the striatumipsiCPuvs0.5
Caudate putamen dorsal circumferenceipsiCPudci-0.5
Caudate putamen lateral circumferenceipsiCPuLc-0.5
Caudate putamen ventral circumferenceipsiCPuvci-0.5
Caudate putamencontraCPu-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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