University of Rostock

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Rat connectome



Medial striatum left


Abbreviation
CPum
Color       
Superior regionsAssociative striatum

SynonymsAbbr.Language
Caudate putamen medial part  
Medial striatumCPumEng
Medial region of the Cpu Eng
Medial caudate putamen Eng
Medial caudate putamenStrm 
Medial region of the neostriatum Eng
Middle association striatum Eng
Striatum mid-portion Eng

SubregionsSide
Medial striatum chemoarchitectonic compartmentsleft
Medialmost caudate putamenleft
Rostrocaudal extrent of the medial striatumleft
Ventral one-third of the medial striatumleft
Ventral one-fourth of the medial part of the striatumleft

Output to

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN1
Substantia nigra compact part lateral tieripsiSNCL2
Substantia nigra compact part medial tieripsiSNCM2
Substantia nigra lateral partipsiSNL2
Substantia nigra medial partipsiSNM3
Substantia nigra reticular partipsiSNR2
Substantia nigra reticular part medial tieripsiSNRm2
Ventral tegmental area A10ipsiVTA-0.5
Ventral tegmental area A10 caudal two-thirdsipsiVTAcptt-0.5
Peripeduncular nucleusipsiPP2
Basal forebrainipsiBAF-0.5
ThalamusipsiT-0.5
Posterior intralaminar thalamic nucleusipsiPIL2
Internal capsuleipsiic-0.5
Internal capsule rostromedial portionipsiicrm-0.5
Bed nucleus of the stria terminalis rostral partipsiBSTro-0.5
Globus pallidusipsiGP2
Dorsal globus pallidusipsiDGP-0.5
Medial globus pallidusipsiMGP2
Peripallidal areaipsiPerPar-0.5
Neocortex layer 4ipsiNEOCXL4-0.5
Neocortex layers 5-6ipsiNEOCXL56-0.5
Medial geniculate nucleusipsiMG2

Input from

NameSideAbbr.WeightDetails
Peduncularpontine nucleus caudal levelsipsiPPNCa-0.5
Substantia nigra A9ipsiSN4
Substantia nigra compact partipsiSNC4
Substantia nigra compact part central partipsiSNCce2
Substantia nigra compact part lateral tieripsiSNCL1
Substantia nigra compact part medial tieripsiSNCM3
Substantia nigra lateral partipsiSNL-0.5
Substantia nigra medial partipsiSNM3
Substantia nigra reticular partipsiSNR2
Substantia nigra reticular part medial tieripsiSNRm-0.5
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 lateral partipsiVTAL1
Paranigral nucleusipsiPN2
Retrorubral nucleusipsiRR2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Deep mesencephalic nucleus intermediateipsiDpMei1
Deep mesencephalic nucleus lateral partipsiDpMeL1
Deep mesencephalic nucleus ventrolateral partipsiDpMeVL2
Dorsal raphe nucleusipsiDR1.5
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Dorsal raphe nucleus median partipsiDRM2
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme2
B6 subnucleusipsiB61
Tuberomammillary nucleusipsiTuM3
A8 dopamine cells retrorubral groupipsiRRF2
ThalamusipsiT0.5
Anteromedial thalamic nucleusipsiAM1
Anteroventral thalamic nucleusipsiAV1
Intralaminar nuclei of the dorsal thalamusipsiILM2
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus dorsomedial partipsiCMDM1
Central medial thalamic nucleus rostral partipsiCMr3
Central medial thalamic nucleus medial partipsiCMm2
Centrolateral thalamic nucleusipsiCL2
Centrolateral thalamic nucleus anteromedial partipsiCLAM3
Centrolateral thalamic nucleus dorsomedial partipsiCLDM1
Centrolateral thalamic nucleus posterolateral partipsiCLPL3
Paracentral thalamic nucleusipsiPC3
Paracentral thalamic nucleus dorsomedial partipsiPCDM1
Paracentral thalamic nucleus rostrocaudal partipsiPCrc2
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus medial partipsiPFM3
Rhomboid thalamic nucleusipsiRh-0.5
Suprageniculate thalamic nucleusipsiSG-1
Mediodorsal thalamic nucleusipsiMD0
Mediodorsal thalamic nucleus lateral partipsiMDL-0.5
Mediodorsal thalamic nucleus middle partipsiMDmi-2
Midline group of the dorsal thalamusipsiMTN2
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus posterior partipsiPVP1
Reuniens thalamic nucleusipsiRe0.5
Intralaminar nuclei dorsal partipsiILND-0.5
Intralaminar nuclei ventral partipsiILNV-0.5
Parafascicular centre-median complex dorsomedial partipsiPFCMDM2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Internal capsuleipsiic-2
Basolateral amygdaloid nucleusipsiBL1
Basolateral nucleus caudal partipsiBLCP1
Basolateral nucleus rostral partipsiBLRP2
Basomedial amygdaloid nucleusipsiBM2
Basomedial nucleus parvicellular division caudal partipsiABpccp2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Caudal globus pallidus medial partipsiGPcm2
Middle part of globus pallidusipsiGPmp1
Caudate putamen tailipsiCPuT-0.5
Subthalamic nucleusipsiSTh1
Cerebral cortexipsiCEC0.5
Ammon hornipsiAmH-0.5
Field CA1 of hippocampusipsiCA12
SubiculumipsiS2
Entorhinal cortexipsiEnt1
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC2
Cingulate cortex area 1ipsiCg11
Cingulate cortex area 1 caudal partipsiCg1c1
Dorsal anterior cingulate cortexipsiDACC1
Ventral anterior cingulate cortex layer 2ipsiVACCL21
Ventral anterior cingulate cortex layer 3ipsiVACCL31
Ventral anterior cingulate cortex layer 5ipsiVACCL51
Cingulate cortex layer 3ipsiCgL31
Cingulate cortex layer 5ipsiCgL53
Cingulate cortex layer 6ipsiCgL61
Prelimbic cortex dorsal partipsiPrLd2
Prelimbic cortex deep layersipsiPrLDL3
Prelimbic cortex ventral partipsiPrLv-0.5
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA2
Frontal cortex area 1ipsiFr12
Frontal cortex area 2ipsiFr22
Frontal cortex area 3ipsiFr32
Temporal association area 2 dorsal partipsiTe2D-0.5
Temporal association area 2 ventral partipsiTe2V-0.5
Dorsal temporal association cortex 1ipsiTed1
Agranular insular cortex rostral partipsiRAIC2
Perirhinal cortexipsiA351
Motoric regionsipsiM1
Lateral agranular prefrontal cortexipsiAGl2
Medial prefrontal cortexipsimPFC2
Medial prefrontal cortex layer 5ipsimPFCL53
Medial prefrontal cortex layer 6ipsimPFCL6-0.5
Medial prefrontal cortex layer 3ipsimPFCL3-0.5
Medial prefrontal cortex layer 4ipsimPFCL4-0.5
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS13
Primary somatosensory cortex barrel fieldipsiS1BF1
Primary somatosensory cortex layer 5ipsiS1L53
Primary somatosensory cortex layer 6ipsiS1L61
Primary somatosensory cortex layer 3ipsiS1L31
Primary somatosensory cortex forelimb regionipsiS1FL2
Primary somatosensory cortex hindlimb regionipsiS1HL2
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5ipsiS1BFcdysL51
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6ipsiS1BFcdysL61
Posterior dygranular zone between whisker and trunk representation layer 5ipsiS1pdyL51
Posterior dygranular zone between whisker and trunk representation layer 6ipsiS1pdyL61
Secondary somatosensory cortexipsiS23
Orbitofrontal cortexipsiOrFCx3
Dorsolateral orbital cortexipsiDLO1
Medial orbital cortexipsiMO2
Medial orbital cortex deep layersipsiMOcxdL3
Ventral orbital cortexipsiVO2
Ventrolateral orbital areaipsiVLO1
Ventrolateral orbital area deep layersipsiVLOd3
Medial geniculate nucleusipsiMG-1
Medial geniculate nucleus dorsal partipsiMGD-1
Medial geniculate nucleus dorsal part medial subdivisionipsiMGDm-1
Medial geniculate nucleus ventral partipsiMGV1
Substantia nigra A9contraSN0.5
Substantia nigra compact partcontraSNC0.5
Substantia nigra reticular partcontraSNR0.5
Ventral tegmental area A10contraVTA1.5
Retrorubral nucleuscontraRR0.5
Dorsal raphe nucleus caudal partcontraDRC0.5
Dorsal raphe nucleus dorsomedial subdivisioncontraDRdm1
Dorsal raphe nucleus median partcontraDRM1
Dorsal raphe nucleus rostral partcontraDRr1
Dorsal raphe nucleus ventromedial subdivisioncontraDRvme1
B6 subnucleuscontraB60.5
Basolateral nucleus caudal partcontraBLCP0.5
Basolateral nucleus rostral partcontraBLRP0.5
Entorhinal cortexcontraEnt0.5
Anterior cingulate cortexcontraACC2
Cingulate cortex layer 3contraCgL31
Cingulate cortex layer 5contraCgL53
Cingulate cortex layer 6contraCgL61
Frontal association cortexcontraFrA2
Dorsal temporal association cortex 1contraTed1
Medial prefrontal cortexcontramPFC1
Primary somatosensory cortex barrel fieldcontraS1BF0.5
Primary somatosensory cortex layer 5contraS1L53
Primary somatosensory cortex layer 6contraS1L61
Primary somatosensory cortex layer 3contraS1L31
Primary somatosensory cortex forelimb regioncontraS1FL1
Primary somatosensory cortex hindlimb regioncontraS1HL1
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5contraS1BFcdysL5-0.5
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6contraS1BFcdysL6-0.5
Posterior dygranular zone between whisker and trunk representation layer 5contraS1pdyL5-0.5
Posterior dygranular zone between whisker and trunk representation layer 6contraS1pdyL6-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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