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Rat connectome



Primary somatosensory cortex barrel field layer 6 right


Abbreviation
S1BF6
Color       
Superior regionsPrimary somatosensory cortex barrel field deep layers

SynonymsAbbr.Language
Primary somatosensory cortex barrel field layer 6S1BF6 

SubregionsSide
Primary somatosensory cortex barrel field layer 6aright
Primary somatosensory cortex barrel field layer 6bright
Primary somatosensory cortex barrel field layer 6 inhibitory neuronsright
Primary somatosensory cortex barrel field layer 6 pyramidal cellsright
Primary somatosensory cortex barrel field layer 4 inhibitory cells of layer 6right
Primary somatosensory cortex barrel field layer 5b inhibitory cells of layer 6right
Primary somatosensory cortex barrel field layer 5 inhibitory cells of layer 6right
Primary somatosensory cortex barrel field layer 5 and layer 6 inhibitorsright
Primary somatosensory cortex barrel field layer 2 and layer 3 inhibitory cells of layer 6right
Primary somatosensory cortex barrel field layer 2 and layer 3 and layer 4 inhibitory cells of layer 6right
Primary somatosensory cortex barrel field layer 6 and layer 5 inhibitory cells of layer 6right

Output to

NameSideAbbr.WeightDetails
StriatumcontraSTR0
ThalamusipsiT3
Dorsal thalamusipsiDOR0.5
Ventrobasal complexipsiVB3
Arcuate nuclei of ventrobasal complexipsiAVB3
External nucleus of ventrobasal complexipsiEVB3
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Ventromedial thalamic nucleusipsiVM1
Intralaminar nucleiipsiILN1
Posterior groupipsiPTG-0.5
Reticular thalamic nucleusipsiRt-0.5
StriatumipsiSTR0
Whiskers motor cortexipsiWMCx2
Forelimb region of secondary somatosensory cortexipsiS2FL2
Infragranular layers of secondary somatosensory cortexipsiS2IGL2

Input from

NameSideAbbr.WeightDetails
Frontal association cortexcontraFrA-0.5
Frontal cortex area 3contraFr3-0.5
Posterior thalamic nuclear groupipsiPo2
Ventral posterior thalamic complexipsiVPT-0.5
Ventral posterior thalamic complex medial partipsiVPTm-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Mid-dorsoventral of the ventral posterolateral thalamic nucleusipsiVPLmdv1
Ventral posteromedial thalamic nucleusipsiVPM1
Ventrobasal complex lateral part dorsal partipsiVBLD1
Ventrobasal complex lateral part medial regionipsiVBLM1
Dorsomedial part of ventrobasal complex medial partipsiVBMDM2
Ventromedial thalamic nucleusipsiVM2
Rostral part of claustrumipsiRCl2
Frontal association cortexipsiFrA-0.5
Frontal cortex area 3ipsiFr3-0.5
Perirhinal cortexipsiA352
Posteromedial barrel subfield vibrissae row C supragranular layersipsiPMBSFCsL0.5
Primary somatosensory cortex barrel field layer 2ipsiS1BF22
Primary somatosensory cortex barrel field layer 3ipsiS1BF32
Primary somatosensory cortex barrel field layer 4ipsiS1BF42
Primary somatosensory cortex barrel field layer 5ipsiS1BF52
Primary somatosensory cortex barrel field layer 6 inhibitory neuronsipsiS1BF6in-0.5
Primary somatosensory cortex barrel field layer 5 and layer 6 inhibitorsipsiS1BFL5L6iL6-0.5
Primary somatosensory cortex dysgranular regionipsiS1DZ2
Secondary somatosensory cortexipsiS22
Vibrissal follicle complex C3ipsiVFCC31

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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