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Rat connectome



Reticular thalamic nucleus right


Abbreviation
Rt
Color       
Superior regionsVentral thalamus

SynonymsAbbr.Language
 RT 
Nucleus reticularis thalami  
Reticular nucleus of the thalamusRTEng
 NRTEng
Thalamic reticular nucleus Eng
Reticular nucleus thalamus Eng
Thalamic reticular nucleusTRNEng
Hypothalamic area immediately medial to the internal capsule Eng
Reticular thalamic nucleusRtEng
Reticular nucleus  
Reticular thalamic nucleustrEng
Reticular nucleus of the thalamus  
Reticular thalamic nucleusRTNEng
Thalamic reticular area Eng

SubregionsSide
Reticular thalamic nucleus anterior partright
Reticular thalamic nucleus anterodorsal partright
Reticular thalamic nucleus anteroventral partright
Reticular thalamic nucleus caudal partright
Reticular thalamic nucleus central partright
Reticular thalamic nucleus dorsal partright
Reticular thalamic nucleus dorsocaudal partright
Reticular thalamic nucleus dorsomedial partright
Reticular thalamic nucleus dorsoventral partright
Reticular thalamic nucleus external partright
Reticular thalamic nucleus intermediate partright
Reticular thalamic nucleus lateral partright
Reticular thalamic nucleus medial partright
Reticular thalamic nucleus posterodorsal partright
Reticular thalamic nucleus prosomere 1right
Reticular thalamic nucleus rostral medial partright
Reticular thalamic nucleus rostral partright
Reticular thalamic nucleus rostrocaudal partright
Reticular thalamic nucleus rostromedial partright
Reticular thalamic nucleus rostroventral partright
Reticular thalamic nucleus ventral partright
Reticular thalamic nucleus ventrolateral partright
Reticular thalamic nucleus ventromedial partright
Reticular thalamic nucleus ventroposterior partright
Reticular thalamic nucleus visual sectorright
Multi whisker reticular cellsright
Anteromedial most portion of the reticular thalamic nucleusright
Reticular thalamic nucleus dorsorostral partright
Caudorostral part of the reticular thalamic nucleusright
Posterior part of the reticular thalamic nucleusright
Anteroposterior part of the reticular thalamic nucleusright
Reticular thalamic nucleus homologous sectorright
Reticular thalamic nucleus adjacent to the laterodorsal nucleusright
Reticular thalamic nucleus cellright
Auditory reticular thalamic nucleusright
Bottom of the reticular thalamic nucleusright
Reticular thalamic nucleus innermost portionright
Caudolateral edge of the reticular thalamic nucleusright
Posteromedial sector of the reticular thalamic nucleusright
Reticular thalamic nucleus extreme ventromedial aspect of central anterior posterior levelsright

Output to

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG0
Ventrolateral periaqueductal graycontraVLPAG0
Superior colliculus rostral partcontrarSC2
Ventral tegmental area A10contraVTA1
Laterodorsal tegmental nucleuscontraLDTg2.5
Ventral tegmental nucleuscontraVTg0
Pedunculopontine tegmental nucleuscontraPPTg1
Deep cerebellar nucleicontraDNC0
Pontine reticular nucleuscontraPRN1
Superior vestibular nucleuscontraSuVe3
Medial vestibular nucleuscontraMVe3
Anterior group of the dorsal thalamuscontraATN2
Central medial thalamic nucleuscontraCM1
Parafascicular thalamic nucleuscontraPF2
Medial group of the dorsal thalamuscontraMED1
Mediodorsal thalamic nucleuscontraMD2
Mediodorsal thalamic nucleus central partcontraMDC1
Mediodorsal thalamic nucleus lateral partcontraMDL1
Mediodorsal thalamic nucleus medial partcontraMDM1
Submedius thalamic nucleuscontraSub1
Paratenial thalamic nucleuscontraPT-0.5
Ventrolateral thalamic nucleuscontraVL2
Ventromedial thalamic nucleus caudal partcontraVMc1
Ventromedial thalamic nucleus caudal two thirdscontraVMctt1
Intralaminar nucleicontraILN2
Laterodorsal thalamic nucleuscontraLD2
Zona incertacontraZI0
HabenulacontraHAB2
Anterior pretectal nucleuscontraAPT2
HippocampuscontraHIPP-0.5
Dentate gyruscontraDG-0.5
Field CA1 of hippocampuscontraCA1-0.5
Field CA2 of hippocampuscontraCA2-0.5
Field CA3 of hippocampuscontraCA3-0.5
Entorhinal cortexcontraEnt-0.5
Medial entorhinal cortexcontraMEnt-0.5
Infragranular layers of the auditory cortexcontraAULi0
Medial prefrontal cortexcontramPFC2
Primary somatosensory cortex barrel fieldcontraS1BF0
Primary somatosensory cortex forelimb regioncontraS1FL0
Intergeniculate leafcontraIGL-0.5
Septal regioncontraSER2
Cervical segment 7contraCS7-1
Periaqueductal grayipsiPAG1
Dorsolateral periaqueductal grayipsiDLPAG0
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG0
Superior colliculusipsiSC-3
Superior colliculus deep layersipsiSCd2
Superior colliculus rostral partipsirSC2
Peduncularpontine nucleusipsiPPN0
Substantia nigra A9 dorsal partipsiSND2
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR2
Substantia nigra reticular part caudolateral tier ventral halfipsiSNRcaLv2
Ventral tegmental area A10ipsiVTA2
Peripeduncular areaipsiPPA0
Laterodorsal tegmental nucleusipsiLDTg2.5
Midbrain tegmentumipsiTGmi3
Ventral tegmental nucleusipsiVTg0
Pedunculopontine tegmental nucleusipsiPPTg1
Anterior interposed nucleusipsiAIN0
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL0
Locus coeruleusipsiLC1
Mesencephalic reticular formationipsiMRF2
Pontine reticular nucleusipsiPRN2
Facial nucleusipsi71
Vestibular nucleiipsiVnc1
Superior vestibular nucleusipsiSuVe3
Medial vestibular nucleusipsiMVe3
Median raphe nucleusipsiMnR2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh2
Lateral mammillary nucleusipsiLM2
ThalamusipsiT1
Dorsal thalamusipsiDOR-0.5
Anterior group of the dorsal thalamusipsiATN2
Anterodorsal thalamic nucleusipsiAD2
Anteromedial thalamic nucleusipsiAM2.5
Anteromedial thalamic nucleus caudal partipsiAMc-0.5
Anteroventral thalamic nucleusipsiAV2
Anteroventral thalamic nucleus caudal partipsiAVCa-0.5
Anteroventral thalamic nucleus medial part ventral partipsiAVmv2
Dorsal half of rostral part of posterior subdivision of anteroventral thalamic nucleusipsiAVPRD3
Ventrolateral part of posterior subdivision of anteroventral thalamic nucleusipsiAVPVL2
Anteroventral thalamic nucleus ventral partipsiAVv-0.5
Interoanterodorsal thalamic nucleusipsiIAD-0.5
Interoanteromedial thalamic nucleusipsiIAM-0.5
Dorsal part of the lateral geniculate complexipsiLGd3
Ventral part of the lateral geniculate complexipsiLGv-1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC3
Parafascicular thalamic nucleusipsiPF3
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo4
Posterior thalamic nuclear group medial partipsiPoMe2
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD3
Mediodorsal thalamic nucleus caudal partipsiMDCa2
Mediodorsal thalamic nucleus central partipsiMDC3
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus medial partipsiMDM3
Submedius thalamic nucleusipsiSub2
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus posterior partipsiPVP2
Reuniens thalamic nucleus caudomedial divisionipsiRecm3
Reunienes thalamic nucleus rostromedial divisionipsiRerm1
Ventrolateral thalamic nucleusipsiVL2
Ventrolateral thalamic nucleus rostral partipsiVLRo-0.5
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB4
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM2
Barreloids of ventral posteromedial thalamic nucleusipsiBVPM-0.5
Ventral posteromedial thalamic nucleus parvicellular partipsiVPMpc2
Ventromedial thalamic nucleusipsiVM-0.5
Ventromedial thalamic nucleus caudal partipsiVMc4
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt4
Ventral posterolateral thalamic nucleus parvicellular partipsiVPLpc2
Ventral posterolateral thalamic nucleus parvicellular part ventral partipsiVPLpcv1
Intralaminar nucleiipsiILN2
Intralaminar nuclei caudal partipsiILNc2
Parafascicular centre-median complexipsiPFCM2.5
Parafascicular nucleusipsiPFa3
Lateral posterior thalamic nucleusipsiLP2.5
Lateral posterior thalamic nucleus laterorostral partipsiLPLR-0.5
Lateral posterior thalamic nucleus mediorostral partipsiLPMR-0.5
Laterodorsal thalamic nucleusipsiLD2
Posterior groupipsiPTG0.5
Posteromedian thalamic nucleusipsiPoMn-0.5
Reticular thalamic nucleus rostral partipsiRtr0
Subparafascicular thalamic nucleusipsiSPF2
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI3
EpithalamusipsiEPIT3
HabenulaipsiHAB2.5
Lateral habenular nucleusipsiLHb2
Medial habenular nucleusipsiMHb1
Pretectal regionipsiPRT2
Anterior pretectal nucleusipsiAPT2
Amygdaloid complexipsiAC1
Caudal basal amygdaloid nucleusipsiBncc-2
Rostral part of claustrumipsiRCl0
Globus pallidusipsiGP2
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP2
Caudate putamenipsiCPu0
Subthalamic nucleusipsiSTh2
Cerebral cortexipsiCEC0
HippocampusipsiHIPP-0.5
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG2
Dorsal hippocampus dentate gyrusipsiDDG-0.5
Field CA1 of hippocampusipsiCA12
Field CA2 of hippocampusipsiCA2-0.5
Field CA3 of hippocampusipsiCA32
Subiculum ventral partipsiSv2
PresubiculumipsiPrS3
ParasubiculumipsiPaS2
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt-0.5
Retrosplenial granular cortex subdivisionsipsiRSGsu1
Anterior cingulate cortexipsiACC-0.5
Cingulate cortex area 1 rostral partipsiCg1r2
Cingulate cortex area 3ipsiCg33
Caudal cingulate cortexipsiCCg1
Rostral part of the cingulate cortexipsiRCg1
Infralimbic cortexipsiIL1
Infralimbic cortex anterior part layer 5ipsiILAnL53
Infralimbic cortex anterior part layer 6ipsiILAnL63
Parietal association cortexipsiPtA0
Infragranular layers of the auditory cortexipsiAULi0
Perirhinal cortexipsiA350
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR1
Hindlimb motor cortexipsiHMCx1
Jaw movement motor cortexipsiJMCx-2
Central part of jaw motor areaipsiCJMCx3
Medial prefrontal cortexipsimPFC2
Primary somatosensory cortexipsiS12
Primary somatosensory cortex barrel fieldipsiS1BF3
Posteromedial barrel subfield C3ipsiPMBSFC3-0.5
Primary somatosensory cortex forelimb regionipsiS1FL3
Visual regionsipsiVR0
Primary visual cortexipsiV1-0.5
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO1
Magnocellular nucleus of the posterior commissureipsiMCPC2
Dorsal geniculate nucleus lateral partipsiDLGl2
Lateral geniculate complexipsiLG0.5
Intergeniculate leafipsiIGL-1
Ventral lateral geniculate nucleusipsiVLG1
Medial geniculate nucleusipsiMG3
Interpeduncular nucleusipsiIP2
Septal regionipsiSER2
Lateral septal nucleusipsiLS2
Cervical segment 7ipsiCS7-1
Flexor digitorum muscleipsiMuscFD0.5
Tibialis anterior muscleipsiMuscTA0.5

Input from

NameSideAbbr.WeightDetails
Central gray lateral partcontraCGL1
Laterodorsal tegmental nucleuscontraLDTg-0.5
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN1
Pedunculopontine tegmental nucleuscontraPPTg1
Lateral cerebellar nucleuscontraCERL-0.5
Locus coeruleus rostral partcontraLCRo1
Pontomesencephalic graycontraPoMG-0.5
Reticular systemcontraRF1
Parabrachial nucleus dorsal partcontraPBD1
Parabrachial nucleus ventral partcontraPBV1
Medullary reticular nucleus dorsal partcontraMdDd1
Intertrigeminal nucleus caudal partcontraI5ca1
Intertrigeminal nucleus medial partcontraI5me1
Intertrigeminal nucleus rostral partcontraI5ro1
Juxtatrigeminal area caudal partcontraJx5ca1
Juxtatrigeminal area medial partcontraJx5me2
Juxtatrigeminal area rostral partcontraJx5ro2
Supratrigeminal nucleus caudal partcontraSUTc2
Principal sensory trigeminal nucleuscontraPr52
Principal sensory trigeminal nucleus caudal partcontraPr5ca2
Principal sensory trigeminal nucleus medial partcontraPr5me2
Principal sensory trigeminal nucleus rostral partcontraPr5ro2
Spinal trigeminal nucleuscontraSp5nc2
Trigemino angular nucleus caudal partcontraTac1
Raphe nucleicontraRAN1
Dorsal raphe nucleuscontraDR1
Dorsal column nucleicontraDCN2
Cuneate nucleuscontraCu2
GracilecontraGra2
Basal forebraincontraBAF1
Nucleus of the horizontal limb of the diagonal bandcontraHDB1
Nucleus of the vertical limb of the diagonal bandcontraVDB1
Medial septal nucleuscontraMS1
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Medial mammillary nucleus lateral partcontraML1
Medial mammillary nucleus medial partcontraMM-0.5
Medial mammillary nucleus posterior partcontraMMNp1
Dorsal thalamuscontraDOR-0.5
Central medial thalamic nucleuscontraCM2
Centrolateral thalamic nucleuscontraCL2
Mediodorsal thalamic nucleuscontraMD2
Reuniens thalamic nucleuscontraRe1
Ventrobasal complexcontraVB0
Intralaminar nucleicontraILN-0.5
Zona incertacontraZI0
Anterior pretectal nucleuscontraAPT-0.5
Anterior pretectal nucleus caudal partcontraAPTca0.5
Anterior pretectal nucleus rostral partcontraAPTro0.5
RetinacontraRET-0.5
Basal nucleus rostral partcontraBncR1
Lateral globus palliduscontraLGP1
Anterior cingulate cortexcontraACC3
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs20
Lateral agranular prefrontal cortexcontraAGl-0.5
Spinal cordcontraMES2
Cervical segment 1contraCS14
Cervical segment 2contraCS24
Cervical segment 3contraCS33
Cervical segment 4contraCS42
Cervical segment 5contraCS52
Cervical segment 6contraCS61
Cervical segment 7contraCS72
Cervical segment 8contraCS82
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT40.5
Thoracal segment 5contraT50.5
Thoracal segment 6contraT60.5
Thoracal segment 7contraT71
Thoracal segment 8contraT80.5
Thoracal segment 9contraT92
Thoracal segment 10contraT102
Thoracal segment 11contraT112
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL13
Lumbar segment 2contraL23
Lumbar segment 3contraL33
Lumbar segment 4contraL42
Lumbar segment 5contraL52
Lumbar segment 6contraL63
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Central grayipsiCG1
Central gray lateral partipsiCGL2
Parabigeminal nucleusipsiPBG-3
Periaqueductal grayipsiPAG-0.5
Ventral periaqueductal grayipsiVPAG0
Ventrolateral periaqueductal grayipsiVLPAG1.5
Periventricular gray matteripsiPVG0
External cortex of the inferior colliculus medial partipsiECICm1
Superior colliculusipsiSC0
Superior colliculus deep layersipsiSCd-0.5
Central tegmental fieldipsiTGAC3
Peduncularpontine nucleusipsiPPN-0.5
Peduncularpontine nucleus caudal levelsipsiPPNCa-0.5
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC2
Substantia nigra compact part ventral tieripsiSNCV-0.5
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa1
Substantia nigra reticular partipsiSNR2
Substantia nigra reticular part caudal tieripsiSNRca0
Ventral tegmental area A10ipsiVTA-0.5
Laterodorsal tegmental nucleusipsiLDTg4
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg4
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1
Pedunculopontine tegmental nucleus rostral partipsiPPTgR3
Deep cerebellar nucleiipsiDNC-0.5
Anterior interposed nucleusipsiAIN3
Posterior interposed nucleusipsiCERpin3
Lateral cerebellar nucleusipsiCERL3
Locus coeruleusipsiLC3
Locus coeruleus rostral partipsiLCRo2
Nucleus incertus pars dissipataipsiNId1
Reticular systemipsiRF2
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleusipsiPRN-0.5
Peribrachial regionipsiPBR3
Cuneiforme nucleusipsiCnF-2
Cuneiforme nucleus dorsal partipsiCnFD-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus dorsal partipsiPBD2
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus ventral partipsiPBV2
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Medullary reticular nucleus dorsal partipsiMdDd1
Subcoeruleus nucleus dorsal partipsiSubCD2
MyelencephalonipsiMYC3
Area postremaipsiAP0
Intertrigeminal nucleus caudal partipsiI5ca0
Intertrigeminal nucleus medial partipsiI5me1
Intertrigeminal nucleus rostral partipsiI5ro1
Juxtatrigeminal area caudal partipsiJx5ca1
Juxtatrigeminal area medial partipsiJx5me1
Juxtatrigeminal area rostral partipsiJx5ro1
Supratrigeminal nucleus caudal partipsiSUTc0
Principal sensory trigeminal nucleusipsiPr51
Principal sensory trigeminal nucleus caudal partipsiPr5ca1
Principal sensory trigeminal nucleus medial partipsiPr5me1
Principal sensory trigeminal nucleus rostral partipsiPr5ro0
Spinal trigeminal nucleusipsiSp5nc1
Trigemino angular nucleus caudal partipsiTac1
Superior vestibular nucleusipsiSuVe-0.5
Nucleus of the solitary tractipsiSol2
Raphe nucleiipsiRAN3
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm1
Dorsal raphe nucleus lateral wingipsiDRlw2
Median raphe nucleusipsiMnR1
Superior central raphe nucleusipsiCS1.5
Pontine raphe nucleusipsiPnR1.5
Raphe magnus nucleusipsiRMg0
B9 serotonin cellsipsiB9-0.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu1
GracileipsiGra1
Gracile caudal partipsiGraC1
Gracile caudomedial partipsiGraCM1
Basal forebrainipsiBAF3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Lateral part of the nucleus of the horizontal limb of the diagonal bandipsiLPHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Basal nucleus MeynertipsiB3
Basal nucleus Meynert caudal partipsiBca-0.5
Substantia innominataipsiSI3
Substantia innominata dorsal partipsiSID-0.5
Magnocellular preoptic nucleusipsiMCPO3
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area perifornical partipsiPFx1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM0
Posterior hypothalamic areaipsiPHA0.5
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Ventromedial hypothalamic nucleusipsiVMH-2
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC-0.5
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Mammillary bodyipsiCMAM-0.5
Lateral mammillary nucleusipsiLM0
Medial mammillary nucleusipsiMMn0
Medial mammillary nucleus lateral partipsiML3
Medial mammillary nucleus medial partipsiMM-0.5
Medial mammillary nucleus median partipsiMMnm1
Medial mammillary nucleus posterior partipsiMMNp3
Medial mammillary nucleus central partipsiMMnCe0
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
ThalamusipsiT3
Dorsal thalamusipsiDOR3
Anterodorsal thalamic nucleusipsiAD2
Anteromedial thalamic nucleusipsiAM-0.5
Anteroventral thalamic nucleusipsiAV2
Dorsal part of the lateral geniculate complexipsiLGd2
Intralaminar nuclei of the dorsal thalamusipsiILM2
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus caudal partipsiCMca2
Central medial thalamic nucleus rostral partipsiCMr2
Centrolateral thalamic nucleusipsiCL3
Gelatinosus thalamic nucleusipsiG-2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus lateral partipsiPFL-0.5
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group medial partipsiPoMe-0.5
Suprageniculate thalamic nucleusipsiSG-1
Medial group of the dorsal thalamusipsiMED-0.5
Mediodorsal thalamic nucleusipsiMD1
Intermediodorsal thalamic nucleusipsiIMD1
Submedius thalamic nucleusipsiSub-0.5
Submedius thalamic nucleus dorsal partipsiSubD-0.5
Submedius thalamic nucleus ventral partipsiSubV-0.5
Midline group of the dorsal thalamusipsiMTN1
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV1
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe3
Ventro anterior thalamic nucleusipsiVA1
Ventrolateral thalamic nucleusipsiVL2
Ventral posterior thalamic complexipsiVPT2
Ventral posterior thalamic nucleus parvicellular partipsiVPPC1
Ventrobasal complexipsiVB1
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Dorsomedial portion of the ventral posteromedial thalamic nucleusipsiVPMdm2
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-2
Ventral posterolateral thalamic nucleus parvicellular partipsiVPLpc2
Parafascicular centre-median complexipsiPFCM-0.5
Lateral posterior thalamic nucleusipsiLP1.5
Laterodorsal thalamic nucleusipsiLD1.5
Posterior groupipsiPTG-0.5
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF0.5
Pretectal regionipsiPRT2
Anterior pretectal nucleusipsiAPT2
Anterior pretectal nucleus caudal partipsiAPTca1
Anterior pretectal nucleus rostral partipsiAPTro1
Medial pretectal nucleusipsiMPT-1
Ansa lenticularisipsial0.5
Internal capsuleipsiic2
RetinaipsiRET-0.5
Basal nucleus rostral partipsiBncR3
Caudal basal amygdaloid nucleusipsiBncc-0.5
Dorsal part of the caudal basal amygdaloid nucleusipsiBnccd-0.5
Rostral part of the caudal basal amygdaloid nucleusipsiBnccr-0.5
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL0.5
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Globus pallidusipsiGP2
Caudal globus pallidusipsiGPc1
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP2
Rostral globus pallidusipsiGPr-3
Ventral pallidumipsiVP3
Ventral pallidum caudal partipsiVPc-0.5
Ventral pallidum lateral partipsiVPlp-0.5
Subthalamic nucleusipsiSTh1
SubiculumipsiS3
PresubiculumipsiPrS-0.5
Retrosplenial regionsipsiRS-0.5
Retrosplenial agranular cortexipsiRSA3
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Retrosplenial granular cortex b region rostrocaudal middle layersipsiRSGbrcmL1
Cerebral cortex layer 6ipsiCCL63
Cingulate cortexipsiCg-0.5
Anterior cingulate cortexipsiACC3
Cingulate cortex area 1ipsiCg13
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Cingulate cortex area 3 layer 5ipsiCg3L50
Cingulate cortex area 3 layer 6ipsiCg3L6-2
Posterior cingulate cortexipsiPCC3
Prelimbic cortexipsiPrL0
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex dorsal part layer 6ipsiPrLdL6-0.5
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA-0.5
Frontal cortex area 2ipsiFr21
Frontal cortex medial aspectipsiFrAma3
Parietal cortex area 1ipsiPar12
Temporal association area 2 dorsal partipsiTe2D-2
Temporal association area 2 dorsal part layer 3ipsiTe2DL3-2
Temporal association area 2 dorsal part layer 4ipsiTe2DL4-2
Temporal association area 2 dorsal part layer 6ipsiTe2DL6-2
Temporal association cortex 1ipsiTeA1
Deep gray matter of the temporal association cortex 1ipsiTeAdL3
Temporal association cortex 1 layer 6ipsiTeAL6-2
Temporal association cortex 1 middle portion layer 3ipsiTeAmL3-2
Temporal association cortex 1 middle portion layer 4ipsiTeAmL4-2
Temporal association cortex 1 middle portion layer 6ipsiTeAmL6-2
Temporal association cortex 1 rostral part layer 3ipsiTeArL3-2
Temporal association cortex 1 rostral part layer 4ipsiTeArL4-2
Temporal association cortex 1 rostral part layer 6ipsiTeArL6-2
Ventral temporal association cortexipsiTev1
Auditory regionsipsiAU3
Primary auditory cortexipsiAu13
Agranular insular cortex posterior partipsiAIP3
Dorsal dysgranular insular cortexipsiDDI-0.5
Granular insular cortexipsiGI-0.5
Granular insular cortex caudal partipsiGIC1
Granular insular cortex layer 6ipsiGIL6-0.5
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs23
Insular cortex caudal partipsiICXca-0.5
Prefrontal cortexipsiPFC2
Prefrontal cortex layer 6ipsiPFCL63
Motoric regionsipsiM3
Lateral prefrontal cortexipsilPFC3
Lateral agranular prefrontal cortexipsiAGl3
Forelimb motor cortexipsiFMCx-0.5
Caudal forelimb motor areaipsiCFMA2
Lateral agranular prefrontal cortex layer 5ipsiAGlL53
Lateral agranular prefrontal cortex layer 6ipsiAGlL63
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL5-2
Jaw movement motor cortexipsiJMCx-2
Primary motor cortex genital areaipsiM1ge2
Medial prefrontal cortex layer 6ipsimPFCL62
Motoric regions layer 6ipsiMRL64
Medial agranular prefrontal cortexipsiAGm0
Medial agranular prefrontal cortex rostral partipsirAGm3
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL5-2
Primary somatosensory cortexipsiS13
Primary somatosensory cortex barrel fieldipsiS1BF3
Posteromedial barrel septaipsiPMBS1
Posteromedial barrel subfield B4 layer 6 lower partipsiPMBSFB4L6L-0.5
Posteromedial barrel subfield C3 layer 6 lower partipsiPMBSFC3L6L-0.5
Primary somatosensory cortex barrel field layer 2ipsiS1BF21
Primary somatosensory cortex barrel field layer 3ipsiS1BF31
Primary somatosensory cortex barrel field layer 4ipsiS1BF41
Primary somatosensory cortex barrel field deep layersipsiS1BFd1.5
Primary somatosensory cortex barrel field layer 5ipsiS1BF51
Primary somatosensory cortex barrel field layer 6ipsiS1BF6-0.5
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Primary somatosensory cortex layer 6ipsiS1L6-0.5
Primary somatosensory cortex layer 6aipsiS1L6a2
Primary somatosensory cortex layer 6bipsiS1L6b2
Primary somatosensory cortex forelimb regionipsiS1FL-0.5
Primary somatosensory cortex forelimb region layer 5ipsiS1FL53
Primary somatosensory cortex forelimb region layer 6ipsiS1FL63
Primary somatosensory cortex forelimb region forepawipsiS1FP3
Primary somatosensory cortex hindlimb regionipsiS1HL-0.5
Secondary somatosensory cortexipsiS2-0.5
Forepaw area of secondary somatosensory cortexipsiS2FP3
Secondary somatosensory cortex layer 5ipsiS2L5-0.5
Secondary somatosensory cortex layer 6ipsiS2L64
Secondary somatosensory cortex layer 6 aipsiS2L6a-0.5
Secondary somatosensory cortex orofacial region whisker representationipsiS2OFWP3
Secondary somatosensory cortex ventral partipsiS2v-0.5
Primary visual cortexipsiV13
Primary visual cortex layer 5ipsiV1L50
Primary visual cortex layer 6 lower partipsiV1L6L4
Primary visual cortex layer 6 upper partipsiV1L6u4
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Lateral extrastriate cortexipsiVISxL2
Anterolateral part of the lateral extrastriate cortex layersipsiVISxLAL-0.5
Mediolateral cortical visual areaipsiVISlm-1
Lateromedial part of the lateral extrastriate cortexipsiVISLLM-0.5
Anterolateral cortical visual areaipsiVISal-1
Medial extrastriate cortexipsiVISM2
Orbital cortexipsiOrC-0.5
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO0
Dorsal geniculate nucleusipsiDLG-0.5
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Ventral lateral geniculate nucleusipsiVLG-0.5
Medial geniculate nucleusipsiMG3
Medial geniculate nucleus dorsal partipsiMGD-1
Medial geniculate nucleus dorsal part medial subdivisionipsiMGDm-1
Medial geniculate nucleus medial partipsiMGM1
Medial geniculate nucleus ventral partipsiMGV1
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl3
Ventral medial septumipsiVMSe-0.5
VentricleipsiV0
Spinal cordipsiMES1
LungipsiOrgsLung-10
Trachea sideipsiOrgsTras4

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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