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Rat connectome



Intralaminar nuclei right


Abbreviation
ILN
Color       
Superior regionsThalamus

SynonymsAbbr.Language
 ILM 
 MIT 
Midline-intralaminar thalamic nuclei Eng
Intralaminar thalamic nucleus Eng
Intralaminar nucleiILNEng
Intralaminar nuclear groupILNEng

SubregionsSide
Central medial intralaminar nucleusright
Centrolateral intralaminar nucleusright
Intralaminar nuclei anterior partright
Intralaminar nuclei caudal partright
Intralaminar nuclei dorsal partright
Intralaminar nuclei lateral partright
Intralaminar nuclei ventral partright
Posterior intralaminar thalamic nucleusright
Rostral intralaminar nucleusright
Parafascicular nucleusright
Parafascicular centre median complexright
Intralaminar nuclei mediodorsal partright

Output to

NameSideAbbr.WeightDetails
Medial vestibular nucleus caudal halfcontraMVePch3
Inferior vestibular nucleuscontraIVN-0.5
Reticular thalamic nucleuscontraRt-0.5
Lateral globus palliduscontraLGP0
Caudate putamencontraCPu0
Agranular insular cortex dorsal partcontraAID-0.5
Agranular insular cortex ventral partcontraAIV-0.5
Intergeniculate leafcontraIGL-0.5
Ventral lateral geniculate nucleuscontraVLG-0.5
Mesopontine tegmental area caudal partipsiTGAmc0
Mesopontine tegmental area mid-levelipsiTGAmm0
Mesopontine tegmental area rostral partipsiTGAmr0
Ventral tegmental area A10ipsiVTA1
Pedunculopontine tegmental nucleusipsiPPTg1.5
Pedunculopontine tegmental nucleus caudal partipsiPPTgC0
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL0
Pedunculopontine tegmental nucleus rostral partipsiPPTgR0
Superior vestibular nucleusipsiSuVe-0.5
Rostral vestibular complexipsiVncR3
Basal forebrainipsiBAF-0.5
Anterior group of the dorsal thalamusipsiATN1
Ventral anterior-lateral complex of the thalamusipsiVAL1.5
Ventrolateral thalamic nucleusipsiVL2
Reticular thalamic nucleus caudal partipsiRtc0.5
Reticular thalamic nucleus rostral partipsiRtr2
Dorsal bank of the anterior portion of the rhinal fissureipsidarf1
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL-0.5
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Medial amygdaloid nucleusipsiMe-0.5
Lateral globus pallidusipsiLGP2
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC-0.5
Accumbens nucleus shellipsiAcbSh-0.5
Caudate putamenipsiCPu3
Anteriorposterior part of caudate putamenipsiCPuAP2
Dorsomedial striatumipsiCPudm2
Dorsal striatumipsiCPud-0.5
Dorsolateral striatumipsiCPudl3
Dorsolateral striatum dorsal partipsiCPudlD-0.5
Mediolateral striatumipsiCPuml2
Rostrocaudal striatumipsiCPurc2
Ventral striatumipsiCPuv2
Ventromedial striatumipsiCPuvm0
Subthalamic nucleusipsiSTh-0.5
Cerebral cortexipsiCEC-0.5
Lateral entorhinal cortexipsiLEnt0.5
Medial entorhinal cortexipsiMEnt1
Piriform cortexipsiPir3
Retrosplenial dorsalipsiRSd-0.5
Retrosplenial granular cortex caudal partipsiRSGC-0.5
White matter of the neocortexipsiWMNCx-2
Cingulate cortexipsiCg1
Anterior cingulate cortexipsiACC-0.5
Anterior cingulate cortex anterior partipsiACCa-1
Anterior cingulate cortex posterior partipsiACCp-1
Cingulate cortex layer 1ipsiCgL12
Cingulate cortex layer 5ipsiCgL52
Cingulate cortex superficial layersipsiCgsLa2
Cingulumipsicg-2
Posterior cingulate cortex anterior partipsiPCCa-1
Posterior cingulate cortex posterior partipsiPCCp-1
Frontal association cortexipsiFrA1
Most ventral part of the pregenual part of the anteromedial cortexipsiFr2mvpg1
Parietal association cortexipsiPtA1.5
Parietal cortex area 1ipsiPar12
Frontal polar cortexipsiFP1
Agranular insular cortexipsiAI1.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL3
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR1
Prefrontal cortexipsiPFC-0.5
Prefrontal cortex dorsomedial partipsiPFCdm-0.5
Prefrontal cortex supragenual partipsisgPFC1
Dorsolateral pregenual sector of the prefrontal cortexipsipgPFCdL1.5
Dorsal part of the pregenual sector of the prefrontal cortexipsidpgPFC1
Caudal part of lateral agranular prefrontal cortexipsiAGlc2
Forelimb motor cortexipsiFMCx2
Hindlimb motor cortexipsiHMCx2
Medial prefrontal cortexipsimPFC-0.5
Medial prefrontal cortex posterior partipsimPFCp1
Medial agranular prefrontal cortex layer 5ipsiAGmL5-0.5
Sensory regionsipsiSR1
Dorsomedial part of somatosensory cortexipsiDMSR1
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex face regionipsiS1FR1
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Primary somatosensory cortex layer 5 aipsiS1L5a-0.5
Primary somatosensory cortex layer 6ipsiS1L6-0.5
Secondary somatosensory cortexipsiS2-0.5
Visual regionsipsiVR1.5
Primary visual cortexipsiV12
Secondary visual cortexipsiV22
Medial part of secondary visual cortex lateral areaipsiV2LM2
Olfactory tubercleipsiTuO2

Input from

NameSideAbbr.WeightDetails
Central gray pons partcontraCGP-0.5
Dorsolateral periaqueductal graycontraDLPAG-0.5
Laterodorsal tegmental nucleuscontraLDTg1
Sublaterodorsal tegmental nucleuscontraSLD3
Pedunculopontine tegmental nucleus pars compactacontraPPNC0.5
Cerebellar nucleicontraDCeN-0.5
Locus coeruleuscontraLC1
Dorsomedial tegmental areacontraDMTg3
Mesencephalic reticular formationcontraMRF3
Pontine reticular nucleus oral part central partcontraPnOC1
Pontine reticular nucleus oral part dorsal partcontraPnOd1
Pontine reticular nucleus caudal partcontraPNC3
Dorsomedial cuneiforme nucleuscontraCnFdm1
Lateral parabrachial nucleuscontraLPB2
Parabrachial nucleus medialcontraPBnMe2
Parabrachial nucleus ventral partcontraPBV1
Gigantocellular reticular nucleuscontraGi3
Spinal trigeminal nucleus caudal partcontraSp5C2
Spinal trigeminal nucleus caudal part layer 3contraSp5CaL31
Spinal trigeminal nucleus caudal part layer 1contraSp5CaL12
Spinal trigeminal nucleus caudal part layer 2contraSp5CaL21
Spinal trigeminal nucleus interpolar part rostrocaudalcontraSp5Irc1.5
Medial vestibular nucleuscontraMVe-2
Lateral vestibular nucleuscontraLVe0.5
Nucleus of the solitary tract lateral partcontraSolL1
Nucleus of the solitary tract medial partcontraSolM1
Reticular thalamic nucleuscontraRt2
Zona incertacontraZI-0.5
Anterior cingulate cortexcontraACC1
Frontal cortex area 2contraFr21
Dysgranular insular cortex layer 5contraDIL5-0.5
Medial agranular prefrontal cortexcontraAGm1
Internal basilar nucleus C1contraIBC14
Lateral cervical nucleus C1contraLatCC12
Nucleus of dorsolateral funiculus C1contraNDLFC12
Area X C1contraSCL10C11.5
Spinal cord layer 5 C1contraSCL5C13
Spinal cord layer 6 C1contraSCL6C1-0.5
Spinal cord layer 4 C1contraSCL4C1-0.5
Spinal cord layer 1 C1contraSCL1C11.5
Spinal cord layer 7 C1contraSCL7C13
Spinal cord layer 8 C1contraSCL8C1-0.5
Spinal cord layer 9 C1contraSCL9C1-0.5
Internal basilar nucleus C2contraIBC21
Lateral cervical nucleus C2contraLatCC21
Nucleus of dorsolateral funiculus C2contraNDLFC21.5
Area X C2contraSCL10C21.5
Spinal cord layer 5 C2contraSCL5C22.5
Spinal cord layer 6 C2contraSCL6C2-0.5
Spinal cord layer 4 C2contraSCL4C2-0.5
Spinal cord layer 1 C2contraSCL1C21.5
Spinal cord layer 7 C2contraSCL7C22.5
Spinal cord layer 8 C2contraSCL8C2-0.5
Spinal cord layer 9 C2contraSCL9C2-0.5
Internal basilar nucleus C3contraIBC30
Lateral cervical nucleus C3contraLatCC31
Nucleus of dorsolateral funiculus C3contraNDLFC31.5
Area X C3contraSCL10C31.5
Spinal cord layer 5 C3contraSCL5C32.5
Spinal cord layer 6 C3contraSCL6C3-0.5
Spinal cord layer 4 C3contraSCL4C3-0.5
Spinal cord layer 1 C3contraSCL1C31.5
Spinal cord layer 7 C3contraSCL7C32.5
Spinal cord layer 8 C3contraSCL8C3-0.5
Spinal cord layer 9 C3contraSCL9C3-0.5
Internal basilar nucleus C4contraIBC40
Lateral cervical nucleus C4contraLatCC41
Nucleus of dorsolateral funiculus C4contraNDLFC41.5
Area X C4contraSCL10C41.5
Spinal cord layer 5 C4contraSCL5C42.5
Spinal cord layer 6 C4contraSCL6C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 1 C4contraSCL1C41.5
Spinal cord layer 7 C4contraSCL7C42.5
Spinal cord layer 8 C4contraSCL8C4-0.5
Spinal cord layer 9 C4contraSCL9C4-0.5
Internal basilar nucleus C5contraIBC50
Lateral cervical nucleus C5contraLatCC51
Nucleus of dorsolateral funiculus C5contraNDLFC51.5
Area X C5contraSCL10C51.5
Spinal cord layer 5 C5contraSCL5C52.5
Spinal cord layer 1 C5contraSCL1C51.5
Spinal cord layer 7 C5contraSCL7C52.5
Internal basilar nucleus C6contraIBC60
Lateral cervical nucleus C6contraLatCC61
Nucleus of dorsolateral funiculus C6contraNDLFC61.5
Area X C6contraSCL10C61.5
Spinal cord layer 5 C6contraSCL5C62.5
Spinal cord layer 1 C6contraSCL1C61.5
Spinal cord layer 7 C6contraSCL7C62.5
Internal basilar nucleus C7contraIBC70
Lateral cervical nucleus C7contraLatCC71
Nucleus of dorsolateral funiculus C7contraNDLFC71.5
Area X C7contraSCL10C71.5
Spinal cord layer 5 C7contraSCL5C72.5
Spinal cord layer 1 C7contraSCL1C71.5
Spinal cord layer 7 C7contraSCL7C72.5
Internal basilar nucleus C8contraIBC80
Lateral cervical nucleus C8contraLatCC81
Nucleus of dorsolateral funiculus C8contraNDLFC81.5
Area X C8contraSCL10C81.5
Spinal cord layer 5 C8contraSCL5C82.5
Spinal cord layer 1 C8contraSCL1C81.5
Spinal cord layer 7 C8contraSCL7C82.5
Nucleus of dorsolateral funiculus T1contraNDLFT11.5
Area X T1contraSCL10T11.5
Spinal cord layer 5 T1contraSCL5T12.5
Spinal cord layer 1 T1contraSCL1T11.5
Spinal cord layer 7 T1contraSCL7T12.5
Nucleus of dorsolateral funiculus T2contraNDLFT21.5
Area X T2contraSCL10T21.5
Spinal cord layer 5 T2contraSCL5T22.5
Spinal cord layer 1 T2contraSCL1T21.5
Spinal cord layer 7 T2contraSCL7T22.5
Nucleus of dorsolateral funiculus T3contraNDLFT31.5
Area X T3contraSCL10T31.5
Spinal cord layer 5 T3contraSCL5T32.5
Spinal cord layer 1 T3contraSCL1T31.5
Spinal cord layer 7 T3contraSCL7T32.5
Nucleus of dorsolateral funiculus T4contraNDLFT41.5
Area X T4contraSCL10T41.5
Spinal cord layer 5 T4contraSCL5T42.5
Spinal cord layer 1 T4contraSCL1T41.5
Spinal cord layer 7 T4contraSCL7T42.5
Nucleus of dorsolateral funiculus T5contraNDLFT51.5
Area X T5contraSCL10T51.5
Spinal cord layer 5 T5contraSCL5T52.5
Spinal cord layer 1 T5contraSCL1T51.5
Spinal cord layer 7 T5contraSCL7T52.5
Nucleus of dorsolateral funiculus T6contraNDLFT61.5
Area X T6contraSCL10T61.5
Spinal cord layer 5 T6contraSCL5T62.5
Spinal cord layer 1 T6contraSCL1T61.5
Spinal cord layer 7 T6contraSCL7T62.5
Nucleus of dorsolateral funiculus T7contraNDLFT71.5
Area X T7contraSCL10T71.5
Spinal cord layer 5 T7contraSCL5T72.5
Spinal cord layer 1 T7contraSCL1T71.5
Spinal cord layer 7 T7contraSCL7T72.5
Nucleus of dorsolateral funiculus T8contraNDLFT81.5
Area X T8contraSCL10T81.5
Spinal cord layer 5 T8contraSCL5T82.5
Spinal cord layer 1 T8contraSCL1T81.5
Spinal cord layer 7 T8contraSCL7T82.5
Nucleus of dorsolateral funiculus T9contraNDLFT91.5
Area X T9contraSCL10T91.5
Spinal cord layer 5 T9contraSCL5T92.5
Spinal cord layer 1 T9contraSCL1T91.5
Spinal cord layer 7 T9contraSCL7T92.5
Nucleus of dorsolateral funiculus T10contraNDLFT101.5
Area X T10contraSCL10T101.5
Spinal cord layer 5 T10contraSCL5T102.5
Spinal cord layer 1 T10contraSCL1T101.5
Spinal cord layer 7 T10contraSCL7T102.5
Nucleus of dorsolateral funiculus T11contraNDLFT111.5
Area X T11contraSCL10T111.5
Spinal cord layer 5 T11contraSCL5T112.5
Spinal cord layer 1 T11contraSCL1T111.5
Spinal cord layer 7 T11contraSCL7T112.5
Nucleus of dorsolateral funiculus T12contraNDLFT121.5
Area X T12contraSCL10T121.5
Spinal cord layer 5 T12contraSCL5T122.5
Spinal cord layer 1 T12contraSCL1T121.5
Spinal cord layer 7 T12contraSCL7T122.5
Internal basilar nucleus T13contraIBT131
Lateral cervical nucleus T13contraLatCT130.5
Nucleus of dorsolateral funiculus T13contraNDLFT131.5
Area X T13contraSCL10T131.5
Spinal cord layer 5 T13contraSCL5T132.5
Spinal cord layer 1 T13contraSCL1T131.5
Spinal cord layer 7 T13contraSCL7T132.5
Internal basilar nucleus L1contraIBL12
Lateral cervical nucleus L1contraLatCL11
Nucleus of dorsolateral funiculus L1contraNDLFL11.5
Area X L1contraSCL10L11.5
Spinal cord layer 5 L1contraSCL5L12.5
Spinal cord layer 1 L1contraSCL1L11.5
Spinal cord layer 7 L1contraSCL7L12.5
Internal basilar nucleus L2contraIBL22
Lateral cervical nucleus L2contraLatCL21
Nucleus of dorsolateral funiculus L2contraNDLFL21.5
Area X L2contraSCL10L21.5
Spinal cord layer 5 L2contraSCL5L22.5
Spinal cord layer 1 L2contraSCL1L21.5
Spinal cord layer 7 L2contraSCL7L22.5
Internal basilar nucleus L3contraIBL32
Lateral cervical nucleus L3contraLatCL31
Nucleus of dorsolateral funiculus L3contraNDLFL31.5
Area X L3contraSCL10L31.5
Spinal cord layer 5 L3contraSCL5L32.5
Spinal cord layer 1 L3contraSCL1L31.5
Spinal cord layer 7 L3contraSCL7L33
Internal basilar nucleus L4contraIBL42
Lateral cervical nucleus L4contraLatCL41
Nucleus of dorsolateral funiculus L4contraNDLFL41.5
Area X L4contraSCL10L41.5
Spinal cord layer 5 L4contraSCL5L42.5
Spinal cord layer 1 L4contraSCL1L41.5
Spinal cord layer 7 L4contraSCL7L43
Internal basilar nucleus L5contraIBL52
Lateral cervical nucleus L5contraLatCL51
Nucleus of dorsolateral funiculus L5contraNDLFL51.5
Area X L5contraSCL10L51.5
Spinal cord layer 5 L5contraSCL5L52.5
Spinal cord layer 1 L5contraSCL1L51.5
Spinal cord layer 7 L5contraSCL7L52.5
Internal basilar nucleus L6contraIBL61
Lateral cervical nucleus L6contraLatCL61
Nucleus of dorsolateral funiculus L6contraNDLFL61.5
Area X L6contraSCL10L61.5
Spinal cord layer 5 L6contraSCL5L62.5
Spinal cord layer 1 L6contraSCL1L61.5
Spinal cord layer 7 L6contraSCL7L62.5
Area X S1contraSCL10S11.5
Spinal cord layer 5 S1contraSCL5S12.5
Spinal cord layer 1 S1contraSCL1S11.5
Spinal cord layer 7 S1contraSCL7S12.5
Area X S2contraSCL10S21.5
Spinal cord layer 5 S2contraSCL5S22.5
Spinal cord layer 1 S2contraSCL1S21.5
Spinal cord layer 7 S2contraSCL7S22.5
Area X S3contraSCL10S31.5
Spinal cord layer 5 S3contraSCL5S32.5
Spinal cord layer 1 S3contraSCL1S31.5
Spinal cord layer 7 S3contraSCL7S32.5
Area X S4contraSCL10S41.5
Spinal cord layer 5 S4contraSCL5S42.5
Spinal cord layer 1 S4contraSCL1S41.5
Spinal cord layer 7 S4contraSCL7S42.5
Central gray pons partipsiCGP-0.5
Periaqueductal grayipsiPAG1
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Periaqueductal gray rostral dorsal partipsiPAGdr-0.5
Periaqueductal gray rostrolateral partipsiPAGRL-0.5
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventrolateral periaqueductal gray rostral partipsiPAGvlr-0.5
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layersipsiSCd1
Central tegmental fieldipsiTGAC-1
Mesopontine tegmental area caudal partipsiTGAmc2
Mesopontine tegmental area dorsal partipsiTGAmd2
Mesopontine tegmental area mid-levelipsiTGAmm2
Mesopontine tegmental area rostral partipsiTGAmr1.5
Mesopontine tegmental area ventral partipsiTGAmv1.5
Ventral midbrain tegmentumipsiVeMT-0.5
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC-0.5
Substantia nigra medial partipsiSNM-0.5
Substantia nigra reticular partipsiSNR1
Substantia nigra reticular part central divisionipsiSNRce-0.5
Substantia nigra reticular part medial tieripsiSNRm4
Substantia nigra reticular part rostrolateral subdivisionipsiSNRRL-0.5
Ventral tegmental tailipsiVTTa1
Retrorubral nucleusipsiRR-1
Lateral tegmental field retroambigual areaipsiLTfr-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Sublaterodorsal tegmental nucleusipsiSLD3
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1.5
Pedunculopontine tegmental nucleus dorsal partipsiPPTgd2
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Pedunculopontine tegmental nucleus rostral partipsiPPTgR1.5
Pedunculopontine tegmental nucleus ventral partipsiPPTgv1.5
Medial cerebellar nucleusipsiMed1
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC3
Parapyramidal nucleusipsiPPy-0.5
Pons dorsal partipsiPdo-0.5
Pontomesencephalic grayipsiPoMG-0.5
Pontine tegmental fieldipsiPTF-1
Dorsomedial tegmental areaipsiDMTg3
Medial reticular formationipsiRFm3
Mesencephalic reticular formationipsiMRF2
Pontine reticular nucleus oral part central partipsiPnOC3
Pontine reticular nucleus oral part dorsal partipsiPnOd3
Pontine reticular nucleus caudal partipsiPNC2
Dorsomedial cuneiforme nucleusipsiCnFdm3
Parabrachial nucleusipsiPB-1
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus dorsal partipsiLPBD2
Lateral parabrachial nucleus internal partipsiLPBI1
Lateral parabrachial nucleus lateral partipsiLPBL2
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsal partipsiPBD1
Parabrachial nucleus medialipsiPBnMe3
Parabrachial nucleus ventral partipsiPBV2
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Medullary reticular nucleusipsiMdD1
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt3
Principal sensory trigeminal nucleusipsiPr52
Principal sensory trigeminal nucleus dorsal partipsiPr5D0
Spinal trigeminal nucleus caudal partipsiSp5C1
Spinal trigeminal nucleus caudal part layer 3ipsiSp5CaL30.5
Spinal trigeminal nucleus caudal part layer 1ipsiSp5CaL11
Spinal trigeminal nucleus caudal part layer 2ipsiSp5CaL20.5
Spinal trigeminal nucleus interpolar part border regionipsiSp5Ib2
Spinal trigeminal nucleus interpolar part caudal dorsomedialipsiSp5Icdm2
Spinal trigeminal nucleus interpolar part dorsal partipsiSp5ID3
Spinal trigeminal nucleus interpolar part dorsolateralipsiSp5IdL3
Spinal trigeminal nucleus interpolar part intermediate partipsiSp5Iim2
Spinal trigeminal nucleus interpolar part rostral ventrolateralipsiSp5IrvL2
Spinal trigeminal nucleus interpolar part ventral partipsiSp5IV-0.5
Spinal trigeminal nucleus interpolar part ventrolateral magnocellularipsiSp5Imc2
Spinal trigeminal nucleus interpolar part ventrolateral parvocellular lateral partipsiSp5IvLL1
Spinal trigeminal nucleus interpolar part ventrolateral parvocellular medial partipsiSp5IvLm3
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Magnocellular laminae of the trigeminal nucleus caudalisipsi5SSCm-0.5
Superior vestibular nucleusipsiSuVe2
Medial vestibular nucleusipsiMVe1
Lateral vestibular nucleusipsiLVe2
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract medial partipsiSolM1
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS2
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg-0.5
A1 noradrenergic cellsipsiA1-0.5
Cuneate nucleus caudal partipsiCuC2
Cuneate nucleus lateral partipsiCuLa3
Cuneate nucleus medial partipsiCuMED3
Cuneate nucleus rostral partipsiCuRo2
Middle part of cuneate nucleusipsiCuM2
GracileipsiGra3
Nucleus of BischoffipsiNBi2
Dorsal paragigantocellular nucleusipsiDPGi3
Substantia innominataipsiSI-0.5
Preoptic nucleusipsiPREn1
Medial preoptic nucleusipsiMPO1
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Posterior hypothalamic areaipsiPHA3
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM-0.5
Supramammillar nucleusipsiSuM1
Retrochiasmatic areaipsiRCh1
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus rostral partipsiRtr-0.5
Zona incertaipsiZI3
Zona incerta dorsal partipsiZID-0.5
Zona incerta ventral partipsiZIV0
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-0.5
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Medial amygdaloid nucleusipsiMe1
Ventral pallidumipsiVP2
Ventral pallidum caudal partipsiVPc2
Ventral pallidum lateral partipsiVPlp2
Accumbens nucleus coreipsiAcbC-0.5
Parasubthalamic nucleusipsiPSTh-2
Retrosplenial dorsalipsiRSd-0.5
Retrosplenial granular cortex c regionipsiRSGc1
Retrosplenial granular cortex rostral partipsiRSGr1
Retrosplenial granular cortex caudal partipsiRSGC-0.5
Anterior cingulate cortexipsiACC3
Cingulate cortex area 1 caudal partipsiCg1c2
Cingulate cortex area 2ipsiCg21
Cingulate cortex area 2 caudal partipsiCg2c2
Prelimbic cortexipsiPrL-0.5
Prelimbic cortex dorsal partipsiPrLd2
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL-0.5
Frontal cortex area 2ipsiFr23
Insular cortexipsiICX2
Dysgranular insular cortex layer 5ipsiDIL5-0.5
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL5-0.5
Motoric regions layer 3ipsiMRL31
Motoric regions layer 5ipsiMRL51
Medial agranular prefrontal cortexipsiAGm3
Medial agranular prefrontal cortex medial partipsimAGm1
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL5-0.5
Primary somatosensory cortexipsiS13
Primary somatosensory cortex barrel fieldipsiS1BF1
Posteromedial barrel subfield A1 layer 6 lower partipsiPMBSFA1L6L-0.5
Posteromedial barrel subfield A2 layer 6 lower partipsiPMBSFA2L6L-0.5
Posteromedial barrel subfield A3 layer 6 lower partipsiPMBSFA3L6L-0.5
Posteromedial barrel subfield A4 layer 6 lower partipsiPMBSFA4L6L-0.5
Posteromedial barrel subfield B1 layer 6 lower partipsiPMBSFB1L6L-0.5
Posteromedial barrel subfield B2 layer 6 lower partipsiPMBSFB2L6L-0.5
Posteromedial barrel subfield B3 layer 6 lower partipsiPMBSFB3L6L-0.5
Posteromedial barrel subfield B4 layer 6 lower partipsiPMBSFB4L6L-0.5
Posteromedial barrel subfield C1 layer 6 lower partipsiPMBSFC1L6L-0.5
Posteromedial barrel subfield C2 layer 6 lower partipsiPMBSFC2L6L-0.5
Posteromedial barrel subfield C3 layer 6 lower partipsiPMBSFC3L6L-0.5
Posteromedial barrel subfield C4 layer 6 lower partipsiPMBSFC4L6L-0.5
Posteromedial barrel subfield C5 layer 6 lower partipsiPMBSFC5L6L-0.5
Posteromedial barrel subfield D1 layer 6 lower partipsiPMBSFD1L6L-0.5
Posteromedial barrel subfield D2 layer 6 lower partipsiPMBSFD2L6L-0.5
Posteromedial barrel subfield D3 layer 6 lower partipsiPMBSFD3L6L-0.5
Posteromedial barrel subfield D4 layer 6 lower partipsiPMBSFD4L6L-0.5
Posteromedial barrel subfield D5 layer 6 lower partipsiPMBSFD5L6L-0.5
Posteromedial barrel subfield D6 layer 6 lower partipsiPMBSFD6L6L-0.5
Posteromedial barrel subfield E1 layer 6 lower partipsiPMBSFE1L6L-0.5
Posteromedial barrel subfield E2 layer 6 lower partipsiPMBSFE2L6L-0.5
Posteromedial barrel subfield E3 layer 6 lower partipsiPMBSFE3L6L-0.5
Posteromedial barrel subfield E4 layer 6 lower partipsiPMBSFE4L6L-0.5
Posteromedial barrel subfield E5 layer 6 lower partipsiPMBSFE5L6L-0.5
Posteromedial barrel subfield E6 layer 6 lower partipsiPMBSFE6L6L-0.5
Posteromedial barrel subfield E7 layer 6 lower partipsiPMBSFE7L6L-0.5
Primary somatosensory cortex barrel field layer 6ipsiS1BF61
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Primary somatosensory cortex layer 6ipsiS1L6-0.5
Primary somatosensory cortex forelimb regionipsiS1FL-0.5
Primary somatosensory cortex hindlimb regionipsiS1HL-0.5
Secondary somatosensory cortex layer 5ipsiS2L5-0.5
Secondary somatosensory cortex layer 6ipsiS2L6-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS1
Internal basilar nucleus C1ipsiIBC11
Lateral cervical nucleus C1ipsiLatCC11
Nucleus of dorsolateral funiculus C1ipsiNDLFC11
Area X C1ipsiSCL10C11
Spinal cord layer 5 C1ipsiSCL5C12
Spinal cord layer 1 C1ipsiSCL1C11
Spinal cord layer 7 C1ipsiSCL7C13
Internal basilar nucleus C2ipsiIBC20.5
Lateral cervical nucleus C2ipsiLatCC20.5
Nucleus of dorsolateral funiculus C2ipsiNDLFC21
Area X C2ipsiSCL10C21
Spinal cord layer 5 C2ipsiSCL5C22
Spinal cord layer 1 C2ipsiSCL1C21
Spinal cord layer 7 C2ipsiSCL7C22
Internal basilar nucleus C3ipsiIBC30
Lateral cervical nucleus C3ipsiLatCC31
Nucleus of dorsolateral funiculus C3ipsiNDLFC31
Area X C3ipsiSCL10C31
Spinal cord layer 5 C3ipsiSCL5C32
Spinal cord layer 1 C3ipsiSCL1C31
Spinal cord layer 7 C3ipsiSCL7C32
Internal basilar nucleus C4ipsiIBC40
Lateral cervical nucleus C4ipsiLatCC41
Nucleus of dorsolateral funiculus C4ipsiNDLFC41
Area X C4ipsiSCL10C41
Spinal cord layer 5 C4ipsiSCL5C42
Spinal cord layer 1 C4ipsiSCL1C41
Spinal cord layer 7 C4ipsiSCL7C42
Internal basilar nucleus C5ipsiIBC50
Lateral cervical nucleus C5ipsiLatCC51
Nucleus of dorsolateral funiculus C5ipsiNDLFC51
Area X C5ipsiSCL10C51
Spinal cord layer 5 C5ipsiSCL5C52
Spinal cord layer 1 C5ipsiSCL1C51
Spinal cord layer 7 C5ipsiSCL7C52
Cervical segment 6ipsiCS6-0.5
Internal basilar nucleus C6ipsiIBC60
Lateral cervical nucleus C6ipsiLatCC61
Nucleus of dorsolateral funiculus C6ipsiNDLFC61
Area X C6ipsiSCL10C61
Spinal cord layer 5 C6ipsiSCL5C62
Spinal cord layer 1 C6ipsiSCL1C61
Spinal cord layer 7 C6ipsiSCL7C62
Cervical segment 7ipsiCS7-0.5
Internal basilar nucleus C7ipsiIBC70
Lateral cervical nucleus C7ipsiLatCC70.5
Nucleus of dorsolateral funiculus C7ipsiNDLFC71
Area X C7ipsiSCL10C71
Spinal cord layer 5 C7ipsiSCL5C72
Spinal cord layer 1 C7ipsiSCL1C71
Spinal cord layer 7 C7ipsiSCL7C72
Cervical segment 8ipsiCS8-0.5
Internal basilar nucleus C8ipsiIBC80
Lateral cervical nucleus C8ipsiLatCC80.5
Nucleus of dorsolateral funiculus C8ipsiNDLFC81
Area X C8ipsiSCL10C81
Spinal cord layer 5 C8ipsiSCL5C82
Spinal cord layer 1 C8ipsiSCL1C81
Spinal cord layer 7 C8ipsiSCL7C82
Thoracal segment 1ipsiT1-0.5
Nucleus of dorsolateral funiculus T1ipsiNDLFT11
Area X T1ipsiSCL10T11
Spinal cord layer 5 T1ipsiSCL5T12
Spinal cord layer 1 T1ipsiSCL1T11
Spinal cord layer 7 T1ipsiSCL7T12
Nucleus of dorsolateral funiculus T2ipsiNDLFT21
Area X T2ipsiSCL10T21
Spinal cord layer 5 T2ipsiSCL5T22
Spinal cord layer 1 T2ipsiSCL1T21
Spinal cord layer 7 T2ipsiSCL7T22
Nucleus of dorsolateral funiculus T3ipsiNDLFT31
Area X T3ipsiSCL10T31
Spinal cord layer 5 T3ipsiSCL5T32
Spinal cord layer 1 T3ipsiSCL1T31
Spinal cord layer 7 T3ipsiSCL7T32
Nucleus of dorsolateral funiculus T4ipsiNDLFT41
Area X T4ipsiSCL10T41
Spinal cord layer 5 T4ipsiSCL5T42
Spinal cord layer 1 T4ipsiSCL1T41
Spinal cord layer 7 T4ipsiSCL7T42
Nucleus of dorsolateral funiculus T5ipsiNDLFT51
Area X T5ipsiSCL10T51
Spinal cord layer 5 T5ipsiSCL5T52
Spinal cord layer 1 T5ipsiSCL1T51
Spinal cord layer 7 T5ipsiSCL7T52
Nucleus of dorsolateral funiculus T6ipsiNDLFT61
Area X T6ipsiSCL10T61
Spinal cord layer 5 T6ipsiSCL5T62
Spinal cord layer 1 T6ipsiSCL1T61
Spinal cord layer 7 T6ipsiSCL7T62
Nucleus of dorsolateral funiculus T7ipsiNDLFT71
Area X T7ipsiSCL10T71
Spinal cord layer 5 T7ipsiSCL5T72
Spinal cord layer 1 T7ipsiSCL1T71
Spinal cord layer 7 T7ipsiSCL7T72
Nucleus of dorsolateral funiculus T8ipsiNDLFT81
Area X T8ipsiSCL10T81
Spinal cord layer 5 T8ipsiSCL5T82
Spinal cord layer 1 T8ipsiSCL1T81
Spinal cord layer 7 T8ipsiSCL7T82
Nucleus of dorsolateral funiculus T9ipsiNDLFT91
Area X T9ipsiSCL10T91
Spinal cord layer 5 T9ipsiSCL5T92
Spinal cord layer 1 T9ipsiSCL1T91
Spinal cord layer 7 T9ipsiSCL7T92
Thoracal segment 10ipsiT10-0.5
Nucleus of dorsolateral funiculus T10ipsiNDLFT101
Area X T10ipsiSCL10T101
Spinal cord layer 5 T10ipsiSCL5T102
Spinal cord layer 1 T10ipsiSCL1T101
Spinal cord layer 7 T10ipsiSCL7T102
Nucleus of dorsolateral funiculus T11ipsiNDLFT111
Area X T11ipsiSCL10T111
Spinal cord layer 5 T11ipsiSCL5T112
Spinal cord layer 1 T11ipsiSCL1T111
Spinal cord layer 7 T11ipsiSCL7T112
Nucleus of dorsolateral funiculus T12ipsiNDLFT121
Area X T12ipsiSCL10T121
Spinal cord layer 5 T12ipsiSCL5T122
Spinal cord layer 1 T12ipsiSCL1T121
Spinal cord layer 7 T12ipsiSCL7T122
Internal basilar nucleus T13ipsiIBT130.5
Lateral cervical nucleus T13ipsiLatCT130.5
Nucleus of dorsolateral funiculus T13ipsiNDLFT131
Area X T13ipsiSCL10T131
Spinal cord layer 5 T13ipsiSCL5T132
Spinal cord layer 1 T13ipsiSCL1T131
Spinal cord layer 7 T13ipsiSCL7T132
Internal basilar nucleus L1ipsiIBL11
Lateral cervical nucleus L1ipsiLatCL10.5
Nucleus of dorsolateral funiculus L1ipsiNDLFL11
Area X L1ipsiSCL10L11
Spinal cord layer 5 L1ipsiSCL5L12
Spinal cord layer 1 L1ipsiSCL1L11
Spinal cord layer 7 L1ipsiSCL7L12
Internal basilar nucleus L2ipsiIBL21
Lateral cervical nucleus L2ipsiLatCL20.5
Nucleus of dorsolateral funiculus L2ipsiNDLFL21
Area X L2ipsiSCL10L21
Spinal cord layer 5 L2ipsiSCL5L22
Spinal cord layer 1 L2ipsiSCL1L21
Spinal cord layer 7 L2ipsiSCL7L22
Lumbar segment 3ipsiL3-0.5
Internal basilar nucleus L3ipsiIBL31
Lateral cervical nucleus L3ipsiLatCL31
Nucleus of dorsolateral funiculus L3ipsiNDLFL31
Area X L3ipsiSCL10L31
Spinal cord layer 5 L3ipsiSCL5L32
Spinal cord layer 1 L3ipsiSCL1L31
Spinal cord layer 7 L3ipsiSCL7L33
Lumbar segment 4ipsiL4-0.5
Internal basilar nucleus L4ipsiIBL41
Lateral cervical nucleus L4ipsiLatCL41
Nucleus of dorsolateral funiculus L4ipsiNDLFL41
Area X L4ipsiSCL10L41
Spinal cord layer 5 L4ipsiSCL5L42
Spinal cord layer 1 L4ipsiSCL1L41
Spinal cord layer 7 L4ipsiSCL7L43
Internal basilar nucleus L5ipsiIBL50.5
Lateral cervical nucleus L5ipsiLatCL51
Nucleus of dorsolateral funiculus L5ipsiNDLFL51
Area X L5ipsiSCL10L51
Spinal cord layer 5 L5ipsiSCL5L52
Spinal cord layer 1 L5ipsiSCL1L51
Spinal cord layer 7 L5ipsiSCL7L52
Internal basilar nucleus L6ipsiIBL60.5
Lateral cervical nucleus L6ipsiLatCL61
Nucleus of dorsolateral funiculus L6ipsiNDLFL61
Area X L6ipsiSCL10L61
Spinal cord layer 5 L6ipsiSCL5L62
Spinal cord layer 1 L6ipsiSCL1L61
Spinal cord layer 7 L6ipsiSCL7L62
Area X S1ipsiSCL10S11
Spinal cord layer 5 S1ipsiSCL5S12
Spinal cord layer 1 S1ipsiSCL1S11
Spinal cord layer 7 S1ipsiSCL7S12
Area X S2ipsiSCL10S21
Spinal cord layer 5 S2ipsiSCL5S22
Spinal cord layer 1 S2ipsiSCL1S21
Spinal cord layer 7 S2ipsiSCL7S22
Area X S3ipsiSCL10S31
Spinal cord layer 5 S3ipsiSCL5S32
Spinal cord layer 1 S3ipsiSCL1S31
Spinal cord layer 7 S3ipsiSCL7S32
Area X S4ipsiSCL10S41
Spinal cord layer 5 S4ipsiSCL5S42
Spinal cord layer 1 S4ipsiSCL1S41
Spinal cord layer 7 S4ipsiSCL7S42

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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