University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Optic chiasm left


Abbreviation
ox
Color       
Superior regionsVisual system

SynonymsAbbr.Language
 och 
Optic chiasmoxEng

SubregionsSide
Caudalmost portion of the optic chiasmleft
Dorsal edge of the optic chiasmleft
Medial portion of the optic chiasmleft

Output to

NameSideAbbr.WeightDetails
A5 noradrenaline cellsipsiA50
Inferior salivatory nucleusipsiIS0
Superior salivatory nucleusipsiSuS0
Median eminence external layeripsiMEeL-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Intermediate lobe of pituitaryipsiIPit-0.5
Posterior lobe of pituitaryipsiPPit-2
Lateral septal nucleusipsiLS2
A5 noradrenaline cellscontraA50
Inferior salivatory nucleuscontraIS0
Superior salivatory nucleuscontraSuS0

Input from

NameSideAbbr.WeightDetails
Parabigeminal nucleusipsiPBG-2
Pedunculopontine tegmental nucleusipsiPPTg-2
Nucleus of the solitary tractipsiSol1
Ventral lateral medulla oblongataipsiMVL1
Magnocellular basal forebrain neuronal complexipsiMBFNC-2
Nucleus of the horizontal limb of the diagonal bandipsiHDB-2
Nucleus of the vertical limb of the diagonal bandipsiVDB-2
Medial septal nucleusipsiMS-2
Basal nucleus MeynertipsiB-2
Substantia innominataipsiSI-2
Preoptic regionipsiPREO3
Medial preoptic areaipsiMPA-2
Median preoptic nucleusipsiMnPO3
Vascular organ of the lamina terminalisipsiVOLT3
HypothalamusipsiHYPO0
Dorsomedial hypothalamic nucleusipsiDMHy1
Mediobasal hypothalamusipsiMeHypo0
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe3
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleusipsiPa1
Preoptic periventricular nucleusipsiPePO3
Suprachiasmatic nucleusipsiSCh-2
Supraoptic regionipsiSoR-2
Supraoptic nucleus perinuclear zoneipsiSOpnz-0.5
Retrochiasmatic area extending medial to 3VipsiRChem-0.5
Subfornical organipsiSFO3
Zona incertaipsiZI-2
Optic nerveipsi2n-0.5
RetinaipsiRET-0.5
Retinal ganglion cellsipsiRETg-2
Bed nucleus of the stria terminalisipsiBST1
Intergeniculate leafipsiIGL-2
Lateral septal nucleusipsiLS-2
Ventral lateral medulla oblongatacontraMVL-0.5
Magnocellular basal forebrain neuronal complexcontraMBFNC-2
Basal nucleus MeynertcontraB-2
Substantia innominatacontraSI-2
RetinacontraRET-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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