University of Rostock

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Rat connectome



Retinal ganglion cells left


Abbreviation
RETg
Color       
Superior regionsRetina ganglion cell layer

SynonymsAbbr.Language
Retinal ganglion cellsRETgEng
Retinal ganglion cellsRGCEng

SubregionsSide
Retinal alpha ganglion cellleft
Retinal ganglion cells type 1left
Retinal ganglion cells type 2left
Retinal ganglion cells type 3left
Retinal ganglion cells in the ventrotemporal regionleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC4
Periaqueductal grayipsiPAG-10
Superior colliculusipsiSC4
Superior colliculus anterior partipsiSCA-0.5
Caudal one third of the superior colliculusipsicotSC-0.5
Superior colliculus superficial layersipsiSCs-0.5
Optic nerve layer of the superior colliculusipsiOp-0.5
Superficial gray layer of the superior colliculusipsiSuG1
Superficial gray layer of the superior colliculus caudal partipsiSuGC2
Superficial gray layer of the superior colliculus mediolateral partipsiSuGmL-0.5
Superficial gray layer of the superior colliculus anteroposterior partipsiSuGap-0.5
Stratum griseum superficialeipsiSCsgr-0.5
Superior colliculus rostral medial partipsiSCRM3
Olivary pretectal nucleusipsiOPT-0.5
Ventrolateral preoptic nucleusipsiVLPO-0.5
HypothalamusipsiHYPO-0.5
Peri supraoptic nucleus retinal terminal field [Preoptic anterior region]ipsiSOperi-0.5
Lateral hypothalamic areaipsiLH3
Anterior hypothalamic areaipsiAHA3
Subparaventricular zone ventral partipsiSuPZv-0.5
Paraventricular hypothalamic nucleusipsiPa-10
Periventricular hypothalamic nucleusipsiPe-10
Suprachiasmatic nucleusipsiSCh3
Suprachiasmatic nucleus dorsomedial partipsiSCnDM1
Suprachiasmatic nucleus ventrolateral partipsiSCnVL3
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Retrochiasmatic areaipsiRCh3
Nucleus of the optic tractipsiOT-0.5
Optic chiasmipsiox-2
Optic nerveipsi2n-0.5
Optic tractipsiopt3
Lateral habenular nucleusipsiLHb1
Pretectal regionipsiPRT-0.5
RetinaipsiRET-0.5
Infero nasal quadrant of the retinaipsiRETinaq1
Infero temporal quadrant of the retinaipsiRETitq1
Superior part of the retinaipsiRETS-0.5
Superior temporal quadrant of the retinaipsiRstq1
Superior part of the retina nasotemporal axisipsiRETSnta-0.5
Lateral terminal nucleus of the accessory optic tractipsiLTeN-10
Medial terminal nucleus of the accessory optic tractipsiMT-0.5
HippocampusipsiHIPP3
Primary visual cortexipsiV1-10
Dorsal geniculate nucleusipsiDLG2
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Dorsal geniculate nucleus lateral part ventrolateral subdivisionipsiDLGLvl3
Dorsal geniculate nucleus lateral part ventromedial partipsiDLGlvm3
Dorsal geniculate nucleus lateral part dorsomedial partipsiDLGldm-0.5
Lateral geniculate complexipsiLG3
Intergeniculate leafipsiIGL3
Rostral intergeniculate leafipsiRIGL-0.5
Caudal intergeniculate leafipsiCIGL-0.5
Mid portion of the intergeniculate leafipsiIGLmi-0.5
Intergeniculate leaf dorsoventral stripipsiIGLdvs-0.5
Ventral lateral geniculate nucleusipsiVLG-0.5
Ventral lateral geniculate nucleus lateral partipsiVLGl1
Dorsal portion of the lateral geniculate complexipsiLGD-0.5
Mediolateral part of the dorsal portion of the lateral geniculate complexipsiLGDML-0.5
Anteroposterior part of the dorsal portion of the lateral geniculate complexipsiLGDAP-0.5
Anteromedial core of the dorsal portion of the lateral geniculate complexipsiLGDAM-0.5
Lateral geniculate complex anteromedial coreipsiLGam2
MesencephaloncontraMEC1
TectumcontraTEC2
Superior colliculuscontraSC4
Superior colliculus superficial layerscontraSCs3
Superficial gray layer of the superior colliculuscontraSuG3
Olivary pretectal nucleuscontraOPT-0.5
Ventrolateral preoptic nucleuscontraVLPO-0.5
Peri supraoptic nucleus retinal terminal field [Preoptic anterior region]contraSOperi-0.5
Lateral hypothalamic areacontraLH-0.5
Retinorecipient anterior hypothalamic areacontraAHArr-0.5
Subparaventricular zone ventral partcontraSuPZv-0.5
Suprachiasmatic nucleuscontraSCh3
Ventrolateral retinorecipient suprachiasmatic areacontraSCnVLrr-0.5
Supraoptic nucleus [Supraoptic region]contraSO-0.5
Retinorecipient retrochiasmatic areacontraRChrr-0.5
ThalamuscontraT-0.5
Posterior thalamic nuclear groupcontraPo2
Nucleus of the optic tractcontraOT-0.5
Optic nervecontra2n-2
Optic tractcontraopt3
Pretectal regioncontraPRT-0.5
RetinacontraRET1
Retinal ganglion cellscontraRETg-0.5
Lateral terminal nucleus of the accessory optic tractcontraLTeN-0.5
Dorsal geniculate nucleus lateral partcontraDLGl3
Dorsal geniculate nucleus lateral part dorsomedial partcontraDLGldm0
Lateral geniculate complexcontraLG3
Intergeniculate leafcontraIGL-0.5
Rostral intergeniculate leafcontraRIGL-0.5
Caudal intergeniculate leafcontraCIGL-0.5
Mid portion of the intergeniculate leafcontraIGLmi-0.5
Ventral lateral geniculate nucleuscontraVLG-10
Dorsal portion of the lateral geniculate complexcontraLGD4
OesophagusipsiOrgsOes-0.5
EyeipsiOrgEye1
EyecontraOrgEye-0.5

Input from

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Superior colliculusipsiSC-0.5
Edinger Westphal nucleusipsiEW-0.5
A5 noradrenaline cellsipsiA5-0.5
Barringtons nucleusipsiBar-0.5
Locus coeruleusipsiLC-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Subcoeruleus nucleus alpha partipsiSubCA-0.5
C1 adrenaline cellsipsiC1-0.5
Ambiguus nucleusipsiAmb-0.5
Facial nucleusipsi7-0.5
Nucleus of the solitary tractipsiSol-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
A1 noradrenergic cellsipsiA1-0.5
Retroambiguus nucleusipsiRAmb-0.5
Inferior salivatory nucleusipsiIS-0.5
Ventromedial medulla oblongataipsiMeObvm-0.5
HypothalamusipsiHYPO-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Dorsal thalamusipsiDOR3
Dorsal part of the lateral geniculate complexipsiLGd3
Optic nerveipsi2n3
Optic tractipsiopt-2
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Autonomic cell columnipsiMESauto-0.5
Dorsal thalamuscontraDOR3
Dorsal part of the lateral geniculate complexcontraLGd3
Optic tractcontraopt-2
Retinal ganglion cellscontraRETg-0.5
Visual regionscontraVR3
Primary visual cortexcontraV13

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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