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Rat connectome



Subfornical organ left


Abbreviation
SFO
Color       
Superior regionsDorsal thalamus

SynonymsAbbr.Language
Subfornical organSFOEng
Subfornical regionSFOEng

SubregionsSide
Central core of the subfornical organleft
Dorsal subfornical organleft
Peripheral region of the subfornical organleft
Rostrocaudal extent of the subfornical organleft
Lateral subfornical organleft
Dorsoventral subfornical organleft
Rostral subfornical organleft
Dorsolateral part of the subfornical organleft
Ventromedial subfornical organleft
Ependymal surface of the subfornical organleft
Ependymal part of the thalamic surface of the subfornical organleft
Dorsal caudal extent of the subfornical organleft
Subfornical organ anterior partleft
Subfornical organ ventral partleft
Caudal subfornical organleft
Posterior stalk of the subfornical organleft
Subfornical organ perinuclear regionleft
Outer part of the subfornical organleft
Subfornical organ main partleft
Subfornical organ outer rimleft

Output to

NameSideAbbr.WeightDetails
Jugular veinipsijugV-2
Central grayipsiCG1
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG1
Edinger Westphal nucleusipsiEW1
Prelocus coeruleus nucleusipsiPLC0
Lateral parabrachial nucleusipsiLPB0
Lateral parabrachial nucleus dorsolateral partipsiLPBdL-0.5
Lateral parabrachial nucleus external lateral partipsiLPBEL-0.5
Lateral parabrachial nucleus ventrolateral partipsiLPBVL-0.5
Parabrachial nucleus lateral division central lateral partipsiPBLCL-0.5
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR3
Dorsal fornixipsidf-2
Median eminence middle portion subependymal layeripsiMEmise2
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the horizontal limb of the diagonal band medial edgeipsiHDBmE1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS2
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO3
Lateral preoptic area medial partipsiLPOm2
Lateral preoptic area dorsomedial to the supraoptic nucleus anterior partipsiLPOdmSOA1
Medial preoptic areaipsiMPA2
Nucleus medianus of the medial preoptic areaipsiMPAme3
Anterior border of the nucleus medianus of the medial preoptic areaipsiMPAmeAB-2
Medial preoptic nucleusipsiMPO0.5
Median preoptic nucleusipsiMnPO3
Ventral part of the median preoptic nucleusipsiMnPOV-0.5
Dorsal median preoptic nucleusipsiMnPOD-0.5
Median preoptic nucleus caudal levelipsiMnPOC-0.5
Median preoptic nucleus middle levelipsiMnPOmL-0.5
Ventrolateral preoptic nucleusipsiVLPO1
Vascular organ of the lamina terminalisipsiVOLT3
HypothalamusipsiHYPO-2
Dorsomedial hypothalamic nucleusipsiDMHy2
Dorsomedial hypothalamic nucleus non-compact partipsiDMHyncp2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area medial part [Preoptic anterior region]ipsiLHAmpar2
Periventricular nucleus of the preoptic anterior hypothalamusipsiPePrA-2
Lateral zoneipsiLHA3
Area periventricularis hypothalamica dorsalisipsiAPD1
Lateral hypothalamic areaipsiLH3
Caudal lateral hypothalamic area above supraoptic nucleus tuberal partipsiLHcaSOT1
Lateral hypothalamic area dorsal partipsiLHd-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area over supraoptic nucleusipsiLHoso1
Lateral hypothalamic area dorsal to the supraoptica nucleus anterior divsionipsiLHdSOA3
Lateral hypothalamic area immediately surrounding the supraoptic nucleusipsiLHso-0.5
Lateral hypothalamic area dorsal to the supraoptic nucleusipsiLHdSO0
Lateral hypothalamic area lateral to the supraoptic nucleusipsiLHLso0
Lateral hypothalamic area dorsomedial to the supraoptic nucleusipsiLHdmSO0
Medial division of the hypothalamusipsiMdH0.5
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area rostral partipsiAHAr0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Nucleus circularisipsiNC3
Subparaventricular zoneipsiSuPZ0
Ventromedial hypothalamic nucleusipsiVMH2
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP0.5
Periventricular zoneipsiPVZ-0.5
Anterior periventricular nucleusipsiPeA3
Anterior periventricular nucleus beneath anterior commissureipsiPeAbac-0.5
Anteroventral periventricular nucleus 2ipsiAVPV20.5
Arcuate nucleusipsiArc1
Arcuate nucleus ventromedial partipsiArcVM3
Arcuate nucleus caudal halfipsiArcch-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Dorsomedial paraventricular hypothalamic nucleusipsiPaDM3
Paraventricular nucleus of the hypothalamus magnocellular division medial magnocellular partipsiPaAMm1
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV0
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus dorsomedial capipsiPadmc1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag2
Paraventricular hypothalamic nucleus magnocellular division between PaLM and PaAMmipsiPaMagb1
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP3
Paraventricular hypothalamic nucleus magnocellular division posterior part lateral zoneipsiPVHpml3
Paraventricular hypothalamic nucleus magnocellular division posterior part medial zoneipsiPVHpmm3
Paraventricular hypothalamic nucleus magnocellular division medial partipsiPaMagM1
Paraventricular hypothalamic nucleus anterior magnocellular divisionipsiPaMagA1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD1
Paraventricular hypothalamic nucleus parvocellular division lateroposterior subnucleiipsiPavPoLP1
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP1
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo3
Paraventricular nucleus medial parvocellular part ventral zoneipsiPaMepv1
Paraventricular hypothalamic nucleus periventricular partipsiPapv3
Paraventricular hypothalamic nucleus rostral accessory clusteripsiParac2
Peri-paraventricular hypothalamic nucleusipsiPPa1
Ventral perinuclear paraventricular hypothalamic areaipsiPPaV1
Caudal periventricular hypothalamic regionipsiPeCa1
Preoptic periventricular nucleusipsiPePO-2
Suprachiasmatic nucleusipsiSCh3
Suprachiasmatic nucleus dorsal divisionipsiSChd1
Suprachiasmatic nucleus perinuclear zoneipsiSChpnz-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO4
Dorsal border in the middle thirds of the supraoptic nucleusipsiSOdbmit2
Episupraoptic nucleusipsiESO0
Nucleus properipsiSOnP-0.5
Supraoptic nucleus anterior divisionipsiSOA3
Ventral border of the Supraoptic nucleus anterior divisionipsiSOAvb3
Supraoptic nucleus dorsal partipsiSOd2
Supraoptic nucleus perinuclear zoneipsiSOpnz3
Supraoptic nucleus posterior partipsiSOP3
Supraoptic nucleus tuberal partipsiSOT3
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV2
Supraoptic nucleus rostral partipsiSOr3
Supraoptic nucleus vasopressin cellsipsiSOVa3
Supraoptic nucleus oxytocin cellsipsiSOo2
Perinuclear zone dorsal to the supraoptic regionipsiSoRpnzd2.5
Perifornical nucleusipsiPeF-0.5
Perifornical nucleus dorsal partipsiPeFD3
Dorsochiasmatic areaipsiDRCh3
Mediodorsal thalamic nucleusipsiMD-0.5
Midline group of the dorsal thalamusipsiMTN1
Paraventricular thalamic nucleusipsiPV-2
Reuniens thalamic nucleusipsiRe1
Reuniens thalamic nucleus caudomedial divisionipsiRecm2
Reunienes thalamic nucleus rostromedial divisionipsiRerm2
Reuniens thalamic nucleus rostrolateral divisionipsiRerl2
Reuniens thalamic nucleus ventral partipsiReV-0.5
Dorsal subfornical organipsiDSFO-2
Rostral subfornical organipsiSFOR-2
Anterior stalk of the subfornical organipsiSFOas-2
Subfornical organ ventral partipsiSFOV-2
Ventrolateral thalamic nucleusipsiVL3
Ventromedial thalamic nucleusipsiVM3
Zona incertaipsiZI-0.5
Zona incerta rostral partipsiZIR-0.5
Optic chiasmipsiox3
Optic tractipsiopt0
Lateral habenular nucleusipsiLHb3
Medial habenular nucleusipsiMHb3
Pineal glandipsiPi2
Anterior lobe of pituitaryipsiAPit0
Posterior lobe of pituitaryipsiPPit1
Medial corticohypothalamic tractipsimcht-2
Stria medullaris of the thalamusipsism-2
Dorsal stria medullaris of the thalamusipsidsm-2
Ventral stria medullaris of the thalamusipsivsm-2
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV1
Bed nucleus of the stria terminalis rostroventral partipsiBSTRV-0.5
Medial amygdaloid nucleusipsiMe0
HippocampusipsiHIPP-2
Anterodorsal hippocampusipsiHIPPAD1
Columns of the fornixipsicoLf-2
Columns of the fornix above the anterior commissureipsicoLfac-2
Hippocampal commissureipsiHIPPCo-2
Infralimbic cortex layer 1ipsiILL11
Infralimbic cortex layer 2ipsiILL21
Infralimbic cortex deep layersipsiILDL-0.5
Infralimbic cortex layer 5ipsiILL51
Infralimbic cortex layer 6ipsiILL61
Infralimbic cortex layer 3ipsiILL31
Infralimbic cortex layer 4ipsiILL41
Periventricular stratum along the posterior face of the posterior commissureipsiPSpf-2
Precommissural bundleipsipcob-2
Interpeduncular nucleusipsiIP2
Lateral septal nucleusipsiLS-2
Lateral septal nucleus ventral partipsiLSV1.5
Septohypothalamic nucleusipsiSHy2.5
Top of 3d ventricleipsiT3V3
Intermediolateral cell column T5ipsiIMLT50
Intermediolateral cell column T6ipsiIMLT60
Intermediolateral cell column T7ipsiIMLT70
Intermediolateral cell column T8ipsiIMLT80
Intermediolateral cell column T9ipsiIMLT90
Intermediolateral cell column T10ipsiIMLT100
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG0
Ventrolateral periaqueductal graycontraVLPAG0
Medial preoptic nucleuscontraMPO0.5
Ventromedial preoptic nucleuscontraVMPO-0.5
Dorsomedial hypothalamic nucleus non-compact partcontraDMHyncp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Anteroventral periventricular nucleus 2contraAVPV20.5
Arcuate nucleuscontraArc1
Paraventricular hypothalamic nucleuscontraPa-0.5
Supraoptic nucleus [Supraoptic region]contraSO2
Dorsal border in the middle thirds of the supraoptic nucleuscontraSOdbmit2
Supraoptic nucleus anterior divisioncontraSOA-0.5
Supraoptic nucleus dorsal partcontraSOd-0.5
Stellate ganglionipsiAutoSteG-0.5
Sympathetic nervous systemipsiSNS0
Parasympathetic nervous systemipsiPaNS2
Liver sideipsiOrgsLivs2
Liver lobeipsiOrgsLivL2
Thyroid glandipsiOrgThyroid2
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg-0.5
Vitreous humor of eyeipsiOrgVHEye3
Lumbar epaxial musclesipsiMuscLep-0.5
Femoral bone marrowipsiOrgSkFemM1
KidneyipsiOrgsKid2
Sublingual glandcontraOrgSubLGL-0.5
Submandibular glandcontraOrgsSubg-0.5
KidneycontraOrgsKid2

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Periaqueductal grayipsiPAG-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Dorsolateral ponsipsiDoLaP-0.5
Locus coeruleusipsiLC4
Prepositus nucleusipsiPr-0.5
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus dorsal partipsiLPBD-0.5
Parabrachial nucleus central lateral partipsiPBCeL-0.5
Caudal portion of the parabrachial nucleus central lateral partipsiPBCeLC-0.5
Gigantocellular reticular nucleusipsiGi1
MyelencephalonipsiMYC-0.5
Hypoglossal nucleusipsi12S0
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract dorsolateral partipsiSolDL3
Nucleus of the solitary tract intermediate partipsiSolIM-0.5
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract medial partipsiSolM3
Nucleus of the solitary tract rostral partipsiSolro0.5
Nucleus of the solitary tract obex levelipsiSolob0
Dorsal motor nucleus of vagus dorsolateral edgeipsi10DLe-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC-0.5
Dorsal raphe nucleus dorsal partipsiDRD-0.5
Median raphe nucleusipsiMnR3
Caudal ventrolateral medullaipsiCVLM2
Rostral ventrolateral medullaipsiRVLM2
Dorsal paragigantocellular nucleusipsiDPGi1
Median eminence middle portion subependymal layeripsiMEmise1
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS1
Dorsal caudal medial septal nucleusipsiDCMS-0.5
Dorsal preoptic regionipsiDPOR1
Medial preoptic areaipsiMPA1
Medial preoptic nucleusipsiMPO-0.5
Median preoptic nucleusipsiMnPO3
Ventral part of the median preoptic nucleusipsiMnPOV2.5
Dorsal median preoptic nucleusipsiMnPOD3
Median preoptic nucleus caudal levelipsiMnPOC3
Median preoptic nucleus rostral levelipsiMnPOR2.5
Vascular organ of the lamina terminalisipsiVOLT2
Dorsal aspect of the vascular organ of the lamina terminalisipsiVOLTda-0.5
HypothalamusipsiHYPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy0.5
Caudal part of the dorsomedial hypothalamic nucleusipsiDMHyC-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area perifornical partipsiPFx2
Most anterior part of the parvalbumin-positive nucleus of the lateral hypothalamusipsiPV1ma-0.5
Anterior hypothalamic areaipsiAHA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Arcuate nucleusipsiArc-0.5
Arcuate nucleus ventromedial partipsiArcVM2
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa1
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus periventricular partipsiPapv1
Preoptic periventricular nucleusipsiPePO-0.5
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Paraventricular thalamic nucleusipsiPV3
Reuniens thalamic nucleusipsiRe-0.5
Zona incertaipsiZI-0.5
Zona incerta rostral partipsiZIR-0.5
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc2
Lateral septal nucleusipsiLS0
Lateral septal nucleus ventral partipsiLSV-0.5
Ventral triangular septal nucleusipsiVTS-0.5
Locus coeruleuscontraLC4
Lateral parabrachial nucleuscontraLPB-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract dorsolateral partcontraSolDL3
Nucleus of the solitary tract intermediate partcontraSolIM-0.5
Nucleus of the solitary tract lateral partcontraSolL1
Nucleus of the solitary tract medial partcontraSolM3
Caudal ventrolateral medullacontraCVLM1.5
Rostral ventrolateral medullacontraRVLM2
Dorsal paragigantocellular nucleuscontraDPGi-0.5
Ventral part of the median preoptic nucleuscontraMnPOV-0.5
Paraventricular hypothalamic nucleus medial parvocellular partcontraMPPa0.5
Paraventricular hypothalamic nucleus periventricular partcontraPapv0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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