University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Caudal midbrain left


Abbreviation
cMEC
Color       
Superior regionsMesencephalon

SynonymsAbbr.Language
Caudal midbraincMECEng
Caudal mesencephalon Eng

SubregionsSide
Mid caudal mesencephalonleft

Output to

NameSideAbbr.WeightDetails
Rostral ventral medulla oblongataipsiRVMeO-0.5
Mammillary bodyipsiCMAM1
Mammillotegmental tractipsimtg-2
Agranular insular cortexipsiAI3
Jaw movement motor cortexipsiJMCx2.5
Cervical segment 1ipsiCS1-0.5
Cervical segment 2ipsiCS2-0.5
Cervical segment 3ipsiCS3-0.5
Cervical segment 4ipsiCS4-0.5
Cervical segment 5ipsiCS5-0.5
Cervical segment 6ipsiCS6-0.5
Cervical segment 7ipsiCS7-0.5
Cervical segment 8ipsiCS8-0.5
Mammillary bodycontraCMAM1
Agranular insular cortexcontraAI1
Jaw movement motor cortexcontraJMCx1

Input from

NameSideAbbr.WeightDetails
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Basal nucleus MeynertipsiB3
Magnocellular preoptic nucleusipsiMCPO3
Primary somatosensory cortexipsiS11.5
Diagonal band of BrocacontraDBB1.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB1.5
Nucleus of the vertical limb of the diagonal bandcontraVDB1.5
Medial septal nucleuscontraMS1.5
Basal nucleus MeynertcontraB0
Magnocellular preoptic nucleuscontraMCPO1.5
Primary somatosensory cortexcontraS11
Deep dorsal horn C7contraDDHC7-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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