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Rat connectome



Medial septal nucleus right


Abbreviation
MS
Color       
Superior regionsMedial septum dorsal band complex

SynonymsAbbr.Language
Medial septum  
Medial septal area  
Nucleus septalis medialisMSCLat
Medial septal nucleusMSEng
Cholinergic cell goup 1 of MesulamCh1Eng
Medially to the rostral part of the lateral septum Eng
Medial septal complexMSA 

SubregionsSide
Dorsal ChAT groupright
Intermediate ChAT groupright
Large multipolar neurons of the medial septal nucleusright
Medial-lateral medial septal nucleusright
Medial non-ChAT groupright
Medial septal nucleus caudal partright
Medial septal nucleus lateral partright
Medial septal nucleus medial partright
Medial septal nucleus rostral partright
Medial septal nucleus rostrodorsal partright
Medial septal nucleus ventrolateral partright
Middle to caudal parts of the medial septumright
Midline ChAT groupright
Ventral ChAT groupright
Medial septal nucleus dorsal partright
Medial septal nucleus midline partright
Ventral aspect of the medial septal nucleusright
Border area of the medial septal nucleusright
Dorsolateral medial septal nucleusright
Medial septal nucleus mid-dorsal aspectright
Dorsal caudal medial septal nucleusright
Medial septal nucleus bipolar cellsright
Medial septal nucleus intermediate cellsright
Intermediomedial part of the medial septal nucleusright
Medial septum vertical limbright
Peripheral medial septal nucleusright
Medial septal nucleus midsagittal partright

Output to

NameSideAbbr.WeightDetails
Caudal midbraincontracMEC1.5
Central graycontraCG1
Central gray mesencephalic partcontraCGM-0.5
Periaqueductal graycontraPAG0
Lateral periaqueductal graycontraLPAG0
Periaqueductal gray medial partcontraPAGm0
Ventral tegmental area A10contraVTA3
Ventral tegmental nucleuscontraVTg0
Dorsal tegmental nucleuscontraDTg-0.5
Dorsal tegmental nucleus ventromedial partcontraDTgVM3
Pedunculopontine tegmental nucleuscontraPPTg1.5
Locus coeruleuscontraLC-0.5
Nucleus incertuscontraNI-0.5
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Parabrachial nucleuscontraPB-0.5
Dorsal raphe nucleuscontraDR1
Linear nucleus of the raphecontraLIR1
Median eminencecontraME-0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB2
Nucleus of the vertical limb of the diagonal bandcontraVDB-2
Preoptic regioncontraPREO3
Medial preoptic areacontraMPA1
Medial preoptic nucleuscontraMPO1
Ventral tuberomammillary nucleuscontraVTM3
Histaminergic cell bridges between tuberomammillary nucleus and the rostral tip of the central medial thalamic nucleuscontraTuMcB3
Lateral zonecontraLHA-0.5
Lateral hypothalamic areacontraLH2
Lateral preoptic area 2contraLPO2-2
Lateroanterior hypothalamic nucleuscontraLAH3
Tuberal magnocellular nucleuscontraTUmag-0.5
Anterior hypothalamic areacontraAHA-2
Dorsomedial hypothalamic nucleus [Medial zone]contraDM1
Caudal magnocellular nucleus posterior portioncontraCMCpp-2
Caudal magnocellular nucleus corecontraCMCc1
Posterior hypothalamic nucleuscontraPH2
Ventromedial hypothalamic nucleuscontraVMH1
Arcuate nucleuscontraArc0.5
Arcuate nucleus ventral portioncontraArcV-0.5
Paraventricular hypothalamic nucleuscontraPa0
Medial mammillary nucleus posterior partcontraMMNp3
Premammillary nucleuscontraPMAN3
Supramammillar nucleuscontraSuM3
Supramammillary decussationcontrasumx-2
Retrochiasmatic areacontraRCh1
Cell bridge between the central medial thalamic nucleus and the mammillary recess of 3VcontraCMmr-2
Reticular thalamic nucleuscontraRt1
Lateral habenular nucleus medial partcontraLHbM3
Medial forebrain bundlecontramfb-2
Postcommissural fornixcontrafpc-2
HippocampuscontraHIPP1
Dorsal hippocampuscontraHIPPd3
Hippocampus intermediate partcontraHIPPip-2
Hilus of the dentate gyruscontraHil1.5
Field CA1 of hippocampuscontraCA10.5
Field CA3 of hippocampuscontraCA31
Subiculum dorsal partcontraSd1
Ventral hippocampuscontraHIPPv-0.5
Septotemporal axis of the hippocampuscontraSTAH3
Fornixcontraf-2
Lateral entorhinal cortexcontraLEnt1
Medial entorhinal cortexcontraMEnt-0.5
Piriform cortexcontraPir1
Caudal cingulate cortexcontraCCg-0.5
Rostral part of the cingulate cortexcontraRCg-0.5
Infralimbic cortexcontraIL1
Frontal association cortexcontraFrA-0.5
Parietal association cortexcontraPtA-0.5
Medial prefrontal cortexcontramPFC-0.5
Interpeduncular nucleuscontraIP-2
Interpeduncular nucleus caudal subnucleuscontraIPC0
Olfactory bulb A16contraMOB0
Dorsal tip of 3d ventriclecontraDt3V-2
Caudal midbrainipsicMEC3
Central grayipsiCG1.5
Anteroposterior extension of the central gray mesencephalic partipsiCGMap1
Between anterior end of dorsal raphe and posterior ventral tegmental nucleus of the central gray mesencephalic partipsiCGMdrvtg1
Periaqueductal grayipsiPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Periaqueductal gray rostral partipsiPAGR3
Rostromedial tegmental nucleusipsiRMTg1
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp1
Ventral tegmental area rostral partipsiVTAR1
Laterodorsal tegmental nucleusipsiLDTg-0.5
Ventral tegmental nucleusipsiVTg0
Dorsal tegmental nucleus ventromedial partipsiDTgVM3
Pedunculopontine tegmental nucleusipsiPPTg2
Cerebellar cortexipsiCERC0
Locus coeruleusipsiLC-0.5
Nucleus incertusipsiNI1
Nucleus incertus pars compactaipsiNIc1
Nucleus incertus pars dissipataipsiNId1
Dorsomedial tegmental areaipsiDMTg-0.5
Reticulotegmental nucleus of the ponsipsiRtTg-0.5
Parabrachial nucleusipsiPB-0.5
Medulla oblongataipsiMeOb0
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus central partipsiDRcep1
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus rostral partipsiDRr1
Linear nucleus of the rapheipsiLIR0.5
Median raphe nucleusipsiMnR3
Superior central raphe nucleusipsiCS-0.5
Paramedian raphe nucleusipsiPMnR-0.5
Pontine raphe nucleusipsiPnR-2
Basal forebrainipsiBAF0.5
Dorsal fornixipsidf3
Median eminenceipsiME2
Internal zone of the median eminenceipsiiZME1
Median eminence external layeripsiMEeL2
Median eminence middle portion subependymal layeripsiMEmise1
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Substantia innominataipsiSI2
Substantia innominata medial partipsiSIme-0.5
Preoptic regionipsiPREO3
Lateral preoptic areaipsiLPO1
Lateral preoptic area caudal partipsiLPOc3
Lateral preoptic area rostral partipsiLPOr1
Medial preoptic areaipsiMPA3
Magnocellular preoptic nucleusipsiMCPO3
Medial preoptic nucleusipsiMPO1
Medial preoptic nucleus medial part caudal regionipsiMPOMc-0.5
Ventrolateral preoptic nucleusipsiVLPO0.5
Ventromedial preoptic nucleusipsiVMPO-0.5
Ventral tuberomammillary nucleusipsiVTM3
Histaminergic cell bridges between tuberomammillary nucleus and the rostral tip of the central medial thalamic nucleusipsiTuMcB3
Posterior region [Lateral division of the hypothalamus]ipsiPReg2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR1
Lateral zoneipsiLHA1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area medial partipsiLHAm0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd1
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv1
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area posterior partipsiLHAp1
Lateral hypothalamic nucleusipsiLHN1
Tuberal region of lateral hypothalamusipsiTuLH0
Lateral preoptic area 2ipsiLPO2-2
Lateral zone tuberal levelipsiLHt1
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu3
Lateroanterior hypothalamic nucleusipsiLAH3
Tuberal magnocellular nucleusipsiTUmag-0.5
Lateral hypothalamic area at the level of the caudal half to the ventromedial hypothalamic nucleusipsiLHAaCVMH1
Mediobasal hypothalamusipsiMeHypo0.5
Medial division of the hypothalamusipsiMdH3
Anterior hypothalamic areaipsiAHA1
Anterior hypothalamic area anterior partipsiAHAA1
Anterior hypothalamic area posterior partipsiAHAP3
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe0.5
Anterior hypothalamic nucleus rostral zoneipsiAHnR2
Anterior part of the anterior hypothalamic nucleusipsiAHna1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Caudal magnocellular nucleus posterior portionipsiCMCpp-2
Caudal magnocellular nucleus coreipsiCMCc1
Posterior hypothalamic nucleusipsiPH3
Tuberal area ventral to the fornixipsiTAvf2
Medial basal hypothalamusipsiMBH-0.5
Ventromedial hypothalamic nucleusipsiVMH1
Ventromedial hypothalamic nucleus central partipsiVMHC0
Ventromedial hypothalamic nucleus medial partipsiVMHM0
Ventromedial hypothalamic nucleus rostral partipsiVMHR0
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0
Periventricular zoneipsiPVZ3
Arcuate nucleus ventral portionipsiArcV-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR1
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM0
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP0
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0
Paraventricular nucleus of the hypothalamus magnocellular division medial magnocellular partipsiPaAMm0
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular division between PaLM and PaAMmipsiPaMagb0
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP0
Paraventricular hypothalamic nucleus dorsomedial capipsiPadmc0
Mid paraventricular hypothalamic nucleusipsiMiPa-0.5
Peri-paraventricular hypothalamic nucleusipsiPPa0
Ventral perinuclear paraventricular hypothalamic areaipsiPPaV0
Subparaventricular zone of the hypothalamusipsiSPa-0.5
Subparaventricular zone of the hypothalamus dorsal regionipsiSPd3
Suprachiasmatic nucleusipsiSCh1
Suprachiasmatic nucleus dorsal divisionipsiSChd1
Suprachiasmatic nucleus lateral divisionipsiSChl1
Supraoptic nucleus [Supraoptic region]ipsiSO3
Nucleus properipsiSOnP3
Supraoptic nucleus anterior divisionipsiSOA3
Supraoptic nucleus dorsal partipsiSOd-0.5
Supraoptic nucleus tuberal partipsiSOT3
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV4
Perinuclear zone dorsal to the supraoptic regionipsiSoRpnzd0.5
Mammillary bodyipsiCMAM0
Medial mammillary nucleus lateral partipsiML-0.5
Medial mammillary nucleus posterior partipsiMMNp3
Premammillary nucleusipsiPMAN3
Premammillary nucleus dorsal partipsiPMD-2
Premammillary nucleus ventral partipsiPMV-2
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML-2
Supramammillary decussationipsisumx-2
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic areaipsiRCh1
ThalamusipsiT1
Dorsal thalamusipsiDOR2.5
Anteromedial thalamic nucleusipsiAM0
Cell bridge between the central medial thalamic nucleus and the mammillary recess of 3VipsiCMmr-2
Mediodorsal thalamic nucleusipsiMD0
Mediodorsal thalamic nucleus central partipsiMDC-10
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Mediodorsal thalamic nucleus medial partipsiMDM-10
Midline group of the dorsal thalamusipsiMTN1
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus rostral partipsiPVr2
Reuniens thalamic nucleusipsiRe2
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Subfornical organipsiSFO1
Central core of the subfornical organipsiSFOC0.5
Dorsal subfornical organipsiDSFO2
Dorsolateral part of the subfornical organipsiSFODL2
Subfornical organ ventral partipsiSFOV1
Reticular thalamic nucleusipsiRt3
Reticular thalamic nucleus intermediate partipsiRti-10
Reticular thalamic nucleus rostral partipsiRtr-10
Zona incerta rostromedial partipsiZIrm3
Optic chiasmipsiox-2
HabenulaipsiHAB2.5
Lateral habenular nucleusipsiLHb2
Lateral habenular nucleus medial partipsiLHbM3
Medial habenular nucleusipsiMHb1
Medial habenular nucleus rostral partipsiMHbr1
Pineal glandipsiPi1
Ventral most portion of the external capsuleipsivmec-2
Medial forebrain bundleipsimfb-2
Postcommissural fornixipsifpc-2
Stria medullaris of the thalamusipsism2
Supracallosal striaipsiscs0
Amygdaloid complexipsiAC1
Basolateral amygdaloid nucleusipsiBL3
Central amygdaloid nucleusipsiCe-0.5
Central amygdaloid nucleus lateral divisionipsiCeL-1
Amygdalopiriform transition areaipsiAPir1
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa1
Ventral pallidumipsiVP3
Cerebral cortexipsiCEC-0.5
HippocampusipsiHIPP4
Hippocampal regionsipsiHIPPR-0.5
Anterior hippocampal continuation deep pyramidal layeripsiAHCCdp-0.5
Anterior hippocampal continuation molecular layeripsiAHCCL10.5
Anterior hippocampal continuation hilusipsiAHCCh-0.5
Anterodorsal one third hippocampusipsiHIPPADot-0.5
Granular cells of the hippocampusipsiHIPgr-0.5
Hippocampal interneuronsipsiHIPin-0.5
Pyramidal cells of the hippocampusipsiHIPcpy-0.5
Dorsal hippocampusipsiHIPPd3
Regio inferior of the dorsal hippocampusipsiHIPPdi4
Rostral pole of the dorsal hippocampal formationipsiHIPPdr3
Hippocampal septalipsiHIPPs-0.5
Hippocampus intermediate partipsiHIPPip-2
Dentate gyrusipsiDG4
Dentate gyrus caudal partipsiDGc3
Dentate gyrus rostral part superficial layer of granule cellsipsiDGrGC-0.5
Dorsal hippocampus dentate gyrusipsiDDG-0.5
Subgranular layer of the dentate gyrusipsiDGsg3
Ventral hippocampus dentate gyrusipsiVDG1
Dentate gyrus molecular layeripsiDGmL2
Hilus of the dentate gyrusipsiHil3
Hilus of the dentate gyrus NPY neuron populationipsiHilnpy-0.5
Supragranular layer of the dentate gyrusipsiDGsga1
Ammon hornipsiAmH-0.5
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus layer alveusipsiCA1L1a-0.5
Field CA1 of hippocampus stratum lacunosum-moleculareipsiCA1LM1
Field CA1 of hippocampus layer stratum lacunosumipsiCA1L6sla1
Field CA1 of hippocampus layer stratum moleculareipsiCA1L7sm1
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad1
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr1
Field CA1 of hippocampus layer stratum oriensipsiCA1or3
Field CA1 of hippocampus NPY neuron populationipsiCA1npy3
Field CA1 of hippocampus ventral partipsiCA1v-0.5
Field CA2 of hippocampusipsiCA2-0.5
Field CA2 of hippocampus layer stratum lacunosumipsiCA2L6sla-0.5
Field CA2 of hippocampus layer stratum moleculareipsiCA2L7sm1
Field CA2 of hippocampus layer stratum radiatumipsiCA2rad-0.5
Field CA2 of hippocampus layer stratum pyramidaleipsiCA2pyr-0.5
Field CA2 of hippocampus layer stratum oriensipsiCA2or3
Field CA2 of hippocampus layer alveusipsiCA2L1a-0.5
Field CA2 of hippocampus NPY neuron populationipsiCA2npy-0.5
Field CA3 of hippocampusipsiCA33
Field CA3 of hippocampus dorsal partipsiCA3d-0.5
Field CA3 of hippocampus layer stratum lacunosumipsiCA3L6sla-0.5
Field CA3 of hippocampus layer stratum moleculareipsiCA3L7sm1
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad3
Field CA3 of hippocampus layer stratum lucidumipsiCA3sl-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr1
Field CA3 of hippocampus layer stratum oriensipsiCA3or3
Field CA3 of hippocampus layer alveusipsiCA3L1a-0.5
Field CA3 of hippocampus NPY neuron populationipsiCA3npy-0.5
Field CA3 of hippocampus ventral partipsiCA3v-0.5
Field CA4 of hippocampus pyramidal layeripsiCA4Lpy-0.5
Ammon horn rostroventral areaipsiAmHrv3
SubiculumipsiS4
Subiculum dorsal partipsiSd1
Subiculum layersipsiSuL-0.5
Subiculum posterior partipsiSupo2
Subiculum ventral partipsiSv3
Posterior hippocampusipsiHIPPpo2
Ventral hippocampusipsiHIPPv3
Regio inferior of the ventral hippocampal formationipsiHIPPiv4
Regio superior of the ventral hippocampal formationipsiHIPPsv4
Supragranular cells of the ventral hippocampal formationipsiHIPPvsgc0
Hippocampal formation midseptotemporal partipsiHIPPmst-0.5
Septotemporal axis of the hippocampusipsiSTAH3
Hippocampal cortexipsiHIPPC3
Granular layer of the dentate gyrusipsiGrDG-0.5
Lacunosum molecular layer of the hippocampusipsiLNol2
Stratum moleculare of the hippocampusipsiLNolsmo-0.5
Oriens layer of the hippocampusipsiOr-0.5
Pyramidal cell layer of the hippocampusipsiPy2
Stratum radiatum of the hippocampusipsiRad2
Dorsal one third of the temporal hippocampusipsiTempHippDOT3
Alveus of the hippocampusipsialv3
Fimbria fornix regionipsififo-2
Fimbria of the hippocampusipsifi-2
Fornixipsif-0.5
Ventral hippocampal commissureipsivhc3
Indusium griseumipsiIG-0.5
PresubiculumipsiPrS-0.5
Presubiculum dorsal part deep layersipsiPrDLD-0.5
Presubiculum layersipsiPrSL-0.5
ParasubiculumipsiPaS-0.5
Parasubiculum layersipsiPaSL-0.5
Entorhinal cortexipsiEnt3
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex layer 2ipsiLEntL23
Lateral entorhinal cortex superficial layer 5ipsiLEntsL53
Lateral entorhinal cortex deep layer 5ipsiLEntL5b1
Lateral entorhinal cortex layer 6ipsiLEntL6-0.5
Lateral entorhinal cortex ventral partipsiVLEA2
Lateral entorhinal cortex ventral part layer 2ipsiVLEAL21
Lateral entorhinal cortex ventral part layer 4ipsiVLEAL43
Lateral entorhinal cortex ventromedial partipsiVMEAL2
Lateral entorhinal cortex dorsolateral partipsiLEntDLa4
Medial entorhinal cortexipsiMEnt3
Medial entorhinal cortex layer 2ipsiMEntLyL23
Medial entorhinal cortex layer 3ipsiMEntLyL31
Medial entorhinal cortex layer 4ipsiMEntLyL43
Medial entorhinal cortex layer 5ipsiMEntLyL51.5
Medial entorhinal cortex layer 5aipsiMEntLyL5a3
Medial entorhinal cortex deep layer 5ipsiMEntLyL5b1
Medial entorhinal cortex layer 6ipsiMEntLyL6-0.5
Medial entorhinal cortex caudal partipsiMEntCa3
Ventral entorhinal cortex layersipsiEntVeL-0.5
Entorhinal cortex layer 3ipsiEntL3-0.5
Entorhinal cortex layer 1ipsiEntL1-0.5
Entorhinal cortex layer 2ipsiEntL2-0.5
Piriform cortexipsiPir1
Retrosplenial regionsipsiRS-0.5
Retrosplenial agranular cortexipsiRSA-1
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc1
Retrosplenial granular cortexipsiRSGra1
Cingulate cortexipsiCg1
Anterior cingulate cortexipsiACC0
Cingulate cortex area 3ipsiCg3-0.5
Caudal cingulate cortexipsiCCg-0.5
Medial cingulate cortexipsiMCg-0.5
Rostral part of the cingulate cortexipsiRCg-0.5
Infralimbic cortexipsiIL1.5
Infralimbic cortex rostral partipsiILR1
NeocortexipsiNEOCX-0.5
Frontal association cortexipsiFrA1
Parietal association cortexipsiPtA1
Temporal cortexipsiTE0
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR1
Prefrontal cortexipsiPFC3
Somatomotoric regionsipsiSMR-0.5
Medial prefrontal cortexipsimPFC2
Visual regionsipsiVR3
Primary visual cortexipsiV10.5
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO-0.5
Ventral orbital cortexipsiVO1
Interpeduncular nucleusipsiIP3
Interpeduncular nucleus apical subnucleusipsiIPA3
Interpeduncular nucleus caudal subnucleusipsiIPC1
Interpeduncular nucleus central subnucleusipsiIPRc0.5
Ventral part of the interpeduncular nucleus central subnucleusipsiIPRcv1
Dorsal part of the interpeduncular nucleus central subnucleusipsiIPRcd0.5
Interpeduncular nucleus dorsolateral subnucleusipsiIPDL0.5
Interpeduncular nucleus dorsomedial subnucleusipsiIPDM1
Interpeduncular nucleus intermediate subnucleusipsiIPI0.5
Interpeduncular nucleus lateral subnucleusipsiIPL1
Interpeduncular nucleus medial part middle partipsiIPMM1
Interpeduncular nucleus rostral subnucleusipsiIPR0.5
Interpeduncular nucleus rostrolateral subnucleusipsiIPRL0.5
Olfactory bulb A16ipsiMOB3
Olfactory cortexipsiOcx-0.5
Lateral septal nucleusipsiLS1
Lateral septal nucleus caudal partipsiLSc-0.5
Lateral septal nucleus intermediate partipsiLSI-0.5
Lateral septal nucleus rostral part medial zoneipsiLSrm3
Septofimbrial nucleusipsiSFi3
Triangular septal nucleusipsiTS3
Border between medial and lateral septumipsiSERbML3
Stria terminalisipsist-0.5
Dorsal tip of 3d ventricleipsiDt3V-2
Lateral ventricleipsiLV-0.5
Spinal cordipsiMES0
Cervical segment 1ipsiCS10
Nasal cavityipsiOrgNaCa1
Olfactory epitheliumipsiOLfEpi1
Intraperitoneal cavityipsiOrgiPTC2

Input from

NameSideAbbr.WeightDetails
Central graycontraCG0.5
Nucleus of DarkschewitschcontraDk1
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN1
Locus coeruleuscontraLC0.5
Reticular systemcontraRF-0.5
Medullary reticular nucleus dorsal partcontraMdDd1
Dorsal raphe nucleuscontraDR0
Dorsal raphe nucleus lateral wingcontraDRlw0
Dorsal raphe nucleus medial partcontraDRNM0
Linear oral nucleus of the raphecontraLIOR0
Superior central raphe nucleuscontraCS0
Raphe magnus nucleus rostral partcontraRMgR2
A1 noradrenergic cellscontraA1-0.5
A2 noradrenergic cellscontraA2-0.5
Intermediate hypothalamic cell groupscontraIHCG-0.5
Medial preoptic areacontraMPA-0.5
HypothalamuscontraHYPO-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Lateral hypothalamic areacontraLH1
Lateral hypothalamic area perifornical partcontraPFx0.5
Tuberal nucleuscontraTU0.5
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic area immediately caudal to the suprachiasmatic areacontraAHAcSCh-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Preoptic periventricular nucleuscontraPePO-0.5
Suprachiasmatic nucleus dorsal divisioncontraSChd-0.5
Region dorsal to suprachiasmatic nucleuscontraSChDT-0.5
Suprachiasmatic preoptic nucleuscontraPSCh-0.5
Supramammillar nucleuscontraSuM0.5
Perifornical nucleuscontraPeF-0.5
Retrochiasmatic area immediately caudal to the suprarchiasmatic areacontraRChcSCh-0.5
HippocampuscontraHIPP2
Hippocampal septalcontraHIPPs0.5
Dentate gyruscontraDG1
Hilus of the dentate gyruscontraHil-0.5
Field CA1 of hippocampus layer stratum radiatumcontraCA1rad-0.5
Field CA1 of hippocampus layer stratum orienscontraCA1or-0.5
Field CA1 of hippocampus ventral partcontraCA1v0.5
Field CA2 of hippocampus septal partcontraCA2s1.5
Field CA3 of hippocampus layer stratum lacunosumcontraCA3L6sla-0.5
Field CA3 of hippocampus layer stratum molecularecontraCA3L7sm-0.5
Field CA3 of hippocampus layer stratum radiatumcontraCA3rad-0.5
Field CA3 of hippocampus layer stratum lucidumcontraCA3sl-0.5
Field CA3 of hippocampus layer stratum pyramidalecontraCA3pyr-0.5
Field CA3 of hippocampus layer stratum orienscontraCA3or-0.5
Septal part of the field CA3 of hippocampuscontraSCA31.5
Ventral part of the interpeduncular nucleus intermediate subnucleuscontraIPIv-0.5
Interpeduncular nucleus lateral subnucleuscontraIPL-0.5
Lateral septal nucleuscontraLS0
Lateral septal nucleus caudal part dorsal zonecontraLScd1
Lateral spinal nucleus C1contraLSpC1-0.5
Spinal cord layers C1contraSCLC12
Area X C1contraSCL10C1-0.5
Deep dorsal horn C1contraDDHC1-0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Lateral spinal nucleus C2contraLSpC2-0.5
Spinal cord layers C2contraSCLC22
Area X C2contraSCL10C2-0.5
Deep dorsal horn C2contraDDHC2-0.5
Spinal cord layer 5 C2contraSCL5C2-0.5
Lateral spinal nucleus C3contraLSpC3-0.5
Spinal cord layers C3contraSCLC31
Area X C3contraSCL10C3-0.5
Deep dorsal horn C3contraDDHC3-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Lateral spinal nucleus C4contraLSpC4-0.5
Spinal cord layers C4contraSCLC41
Area X C4contraSCL10C4-0.5
Deep dorsal horn C4contraDDHC4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Lateral spinal nucleus C5contraLSpC5-0.5
Spinal cord layers C5contraSCLC51
Area X C5contraSCL10C5-0.5
Deep dorsal horn C5contraDDHC5-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Lateral spinal nucleus C6contraLSpC6-0.5
Spinal cord layers C6contraSCLC61
Area X C6contraSCL10C6-0.5
Deep dorsal horn C6contraDDHC6-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 4 C6contraSCL4C6-0.5
Spinal cord layer 1 C6contraSCL1C6-0.5
Lateral spinal nucleus C7contraLSpC7-0.5
Spinal cord layers C7contraSCLC71
Area X C7contraSCL10C7-0.5
Deep dorsal horn C7contraDDHC7-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 4 C7contraSCL4C7-0.5
Spinal cord layer 1 C7contraSCL1C7-0.5
Lateral spinal nucleus C8contraLSpC8-0.5
Spinal cord layers C8contraSCLC81
Area X C8contraSCL10C8-0.5
Deep dorsal horn C8contraDDHC8-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 4 C8contraSCL4C8-0.5
Spinal cord layer 1 C8contraSCL1C8-0.5
Lateral spinal nucleus T1contraLSpT1-0.5
Spinal cord layers T1contraSCLT11
Area X T1contraSCL10T1-0.5
Deep dorsal horn T1contraDDHT1-0.5
Spinal cord layer 5 T1contraSCL5T1-0.5
Spinal cord layer 4 T1contraSCL4T1-0.5
Spinal cord layer 1 T1contraSCL1T1-0.5
Lateral spinal nucleus T2contraLSpT2-0.5
Area X T2contraSCL10T2-0.5
Deep dorsal horn T2contraDDHT2-0.5
Spinal cord layer 5 T2contraSCL5T2-0.5
Lateral spinal nucleus T3contraLSpT3-0.5
Area X T3contraSCL10T3-0.5
Deep dorsal horn T3contraDDHT3-0.5
Spinal cord layer 5 T3contraSCL5T3-0.5
Lateral spinal nucleus T4contraLSpT4-0.5
Area X T4contraSCL10T4-0.5
Deep dorsal horn T4contraDDHT4-0.5
Spinal cord layer 5 T4contraSCL5T4-0.5
Lateral spinal nucleus T5contraLSpT5-0.5
Area X T5contraSCL10T5-0.5
Deep dorsal horn T5contraDDHT5-0.5
Spinal cord layer 5 T5contraSCL5T5-0.5
Lateral spinal nucleus T6contraLSpT6-0.5
Area X T6contraSCL10T6-0.5
Deep dorsal horn T6contraDDHT6-0.5
Spinal cord layer 5 T6contraSCL5T6-0.5
Lateral spinal nucleus T7contraLSpT7-0.5
Area X T7contraSCL10T7-0.5
Deep dorsal horn T7contraDDHT7-0.5
Spinal cord layer 5 T7contraSCL5T7-0.5
Lateral spinal nucleus T8contraLSpT8-0.5
Area X T8contraSCL10T8-0.5
Deep dorsal horn T8contraDDHT8-0.5
Spinal cord layer 5 T8contraSCL5T8-0.5
Lateral spinal nucleus T9contraLSpT9-0.5
Area X T9contraSCL10T9-0.5
Deep dorsal horn T9contraDDHT9-0.5
Spinal cord layer 5 T9contraSCL5T9-0.5
Lateral spinal nucleus T10contraLSpT10-0.5
Area X T10contraSCL10T10-0.5
Deep dorsal horn T10contraDDHT10-0.5
Spinal cord layer 5 T10contraSCL5T10-0.5
Lateral spinal nucleus T11contraLSpT11-0.5
Area X T11contraSCL10T11-0.5
Deep dorsal horn T11contraDDHT11-0.5
Spinal cord layer 5 T11contraSCL5T11-0.5
Lateral spinal nucleus T12contraLSpT12-0.5
Area X T12contraSCL10T12-0.5
Deep dorsal horn T12contraDDHT12-0.5
Spinal cord layer 5 T12contraSCL5T12-0.5
Lateral spinal nucleus T13contraLSpT13-0.5
Area X T13contraSCL10T13-0.5
Deep dorsal horn T13contraDDHT13-0.5
Spinal cord layer 5 T13contraSCL5T13-0.5
Lateral spinal nucleus L1contraLSpL1-0.5
Area X L1contraSCL10L1-0.5
Deep dorsal horn L1contraDDHL1-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Lateral spinal nucleus L2contraLSpL2-0.5
Area X L2contraSCL10L2-0.5
Deep dorsal horn L2contraDDHL2-0.5
Spinal cord layer 5 L2contraSCL5L2-0.5
Lateral spinal nucleus L3contraLSpL3-0.5
Area X L3contraSCL10L3-0.5
Deep dorsal horn L3contraDDHL3-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Lateral spinal nucleus L4contraLSpL4-0.5
Area X L4contraSCL10L4-0.5
Deep dorsal horn L4contraDDHL4-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Lateral spinal nucleus L5contraLSpL5-0.5
Area X L5contraSCL10L5-0.5
Deep dorsal horn L5contraDDHL5-0.5
Spinal cord layer 5 L5contraSCL5L5-0.5
Lateral spinal nucleus L6contraLSpL6-0.5
Area X L6contraSCL10L6-0.5
Deep dorsal horn L6contraDDHL6-0.5
Spinal cord layer 5 L6contraSCL5L6-0.5
Lateral spinal nucleus S1contraLSpS1-0.5
Area X S1contraSCL10S1-0.5
Deep dorsal horn S1contraDDHS1-0.5
Spinal cord layer 5 S1contraSCL5S1-0.5
Lateral spinal nucleus S2contraLSpS2-0.5
Area X S2contraSCL10S2-0.5
Deep dorsal horn S2contraDDHS2-0.5
Spinal cord layer 5 S2contraSCL5S2-0.5
Lateral spinal nucleus S3contraLSpS3-0.5
Area X S3contraSCL10S3-0.5
Deep dorsal horn S3contraDDHS3-0.5
Spinal cord layer 5 S3contraSCL5S3-0.5
Lateral spinal nucleus S4contraLSpS4-0.5
Area X S4contraSCL10S4-0.5
Deep dorsal horn S4contraDDHS4-0.5
Spinal cord layer 5 S4contraSCL5S4-0.5
Lateral spinal nucleus Co1contraLSpCo1-0.5
Deep dorsal horn Co1contraDDHCo1-0.5
Lateral spinal nucleus Co2contraLSpCo2-0.5
Deep dorsal horn Co2contraDDHCo2-0.5
Lateral spinal nucleus Co3contraLSpCo3-0.5
Deep dorsal horn Co3contraDDHCo3-0.5
MesencephalonipsiMEC1
Central grayipsiCG1
Central gray alpha partipsiCGA3
Central gray mesencephalic partipsiCGM3
Medial longitudinal fasciculusipsimlf2
Nucleus of DarkschewitschipsiDk3
Periaqueductal grayipsiPAG3
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Periaqueductal gray rostrocaudal extentipsiPAGroe0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Periventricular gray matteripsiPVG3
Substantia nigra A9ipsiSN3
Most medial part of the substantia nigra compact partipsiSNCmM-0.5
Ventral tegmental area A10ipsiVTA3
Caudal portion portion of the ventral tegmental area A10 ventral partipsiVTAvc3
Caudal linear nucleus of the rapheipsiCLi3
Laterodorsal tegmental nucleusipsiLDTg2
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC0.5
Edinger Westphal nucleusipsiEW2
A3 noradrenaline areaipsiA30
A4 noradrenaline cellsipsiA41
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA71
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC3
Nucleus incertusipsiNI3
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId3
Pontine nuclei rostromedial partipsiBPNrm-2
Reticular systemipsiRF-0.5
Mesencephalic reticular formationipsiMRF2
Pontine reticular nucleusipsiPRN0
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus external divison lateral partipsiPBeDL-0.5
Medial medullary reticular nucleusipsiMMdD1
Medullary reticular nucleus dorsal partipsiMdDd1
Subcoeruleus nucleusipsiSubC1
C1 adrenaline cellsipsiC12
C2 adrenaline cellsipsiC22
Caudal nucleus of the solitary tract medial partipsiSolcame1
Nucleus of the solitary tract medial partipsiSolM-0.5
Raphe nucleiipsiRAN3
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus caudal part non serotoninergic populationipsiDRCnsp2
Ventral part of the caudal dorsal raphe nucleusipsiDRCV3
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus dorsal part non serotoninergic populationipsiDRDnsp2
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Dorsal raphe nucleus interfascicular part non serotoninergic populationipsiDRInsp2
Dorsal raphe nucleus lateral partipsiDRLa2
Dorsal raphe nucleus lateral wingipsiDRlw0.5
Dorsal raphe nucleus lateral wing non serotoninergic populationipsiDRIwnsp2
Dorsal raphe nucleus medial partipsiDRNM0.5
Dorsal raphe nucleus midrostrocaudal part non serotoninergic populationipsiDRmrcnsp2
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus rostral part non serotoninergic populationipsiDRrnsp2
Dorsal raphe nucleus rostrocaudal partipsiDRrc2
Dorsal raphe nucleus ventral partipsiDRV-0.5
Dorsal raphe nucleus ventral part non serotoninergic populationipsiDRVnsp2
Dorsal raphe nucleus ventrolateral part non serotoninergic populationipsiDRVLnsp2
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme3
Linear oral nucleus of the rapheipsiLIOR0.5
Rostral linear nucleus of the rapheipsiRLi2
Median raphe nucleusipsiMnR4
Superior central raphe nucleusipsiCS1.5
Median raphe nucleus dorsocaudal partipsiMnRdc3
Median raphe nucleus peripheral partipsiMnRpe-0.5
Paramedian raphe nucleusipsiPMnR-0.5
Pontine raphe nucleusipsiPnR3
Raphe magnus nucleusipsiRMg-0.5
Raphe magnus nucleus rostral partipsiRMgR2
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa2
B9 serotonin cellsipsiB91
Isthmus region of the rapheipsiRANi-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
A1 noradrenergic cellsipsiA12
A2 noradrenergic cellsipsiA22
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleus alpha partipsiLPBGiA-0.5
Caudal part of the paragigantocellular reticular nucleusipsiCPGi1
Predorsal bundleipsipd-0.5
Basal forebrainipsiBAF-2
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Nucleus of the diagonal band mid-dorsoventral partipsiDBBmdv-2
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI3
Intermediate hypothalamic cell groupsipsiIHCG2
Lateral preoptic areaipsiLPO3
Lateral preoptic area rostral partipsiLPOr-0.5
Medial preoptic areaipsiMPA3
Medial preoptic area periventricular partipsiMPApv0
Medial preoptic area properipsiMPAp2
Medial preoptic area dorsolateral partipsiMPADL3
Lateral preoptic nucleusipsiLPN-0.5
Magnocellular preoptic nucleusipsiMCPO-0.5
Medial preoptic nucleusipsiMPO3
Medial preoptic nucleus central partipsiMPOC2
Medial preoptic nucleus lateral partipsiMPOL-0.5
Ventrolateral preoptic nucleusipsiVLPO2
Tuberomammillar systemipsiTMS1
Tuberomammillary nucleus dorsomedial partipsiTBMdm1
DiencephalonipsiDEC-0.5
HypothalamusipsiHYPO1
Dorsomedial hypothalamic nucleusipsiDMHy1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC2
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR3
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar2.5
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR2.5
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral zoneipsiLHA3
Area periventricularis hypothalamica dorsalisipsiAPD-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area anterior partipsiLHAa3
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv2
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa3
Lateral hypothalamic area perifornical partipsiPFx3
Ventral perifornical lateral hypothalamusipsiPFxV3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Tuberal nucleusipsiTU1
Medial zoneipsiMHA-0.5
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area lateral partipsiAHAl-0.5
Anterior hypothalamic area posterior partipsiAHAP-2
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe3
Anterior hypothalamic area caudal partipsiAHAca-0.5
Anterior hypothalamic area immediately caudal to the suprachiasmatic areaipsiAHAcSCh1
Anterior hypothalamic nucleusipsiAHn1
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc1
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleusipsiPH0.5
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo3
Subparaventricular zoneipsiSuPZ3
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus central partipsiVMHC0
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM0.5
Ventromedial hypothalamic nucleus posterior partipsiVMHP-2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0.5
Periventricular zoneipsiPVZ-0.5
Arcuate nucleusipsiArc3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Paraventricular hypothalamic nucleusipsiPa1
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Paraventricular hypothalamic nucleus dorsomedial partipsiPaDoM3
Dorsolateral paraventricular hypothalamic nucleusipsiPaDL3
Posterior periventricular nucleusipsiPeP-0.5
Preoptic periventricular nucleusipsiPePO1
Suprachiasmatic nucleusipsiSCh1
Suprachiasmatic nucleus dorsal divisionipsiSChd1
Suprachiasmatic nucleus dorsomedial partipsiSCnDM0
Suprachiasmatic nucleus ventrolateral partipsiSCnVL0
Region dorsal to suprachiasmatic nucleusipsiSChDT1
Suprachiasmatic preoptic nucleusipsiPSCh1
Medial hypothalamic groupipsiMHYPOg3
Incerto hypothalamic areaipsiicHYPO1
Mammillary bodyipsiCMAM3
Lateral mammillary nucleusipsiLM-0.5
Mammillary peduncleipsimp1
Medial mammillary nucleus median partipsiMMnm3
Premammillary nucleusipsiPMAN1
Premammillary nucleus dorsal partipsiPMD-2
Premammillary nucleus ventral partipsiPMV2
Submammillothalamic nucleusipsiSMT-0.5
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML3
Supramammillar nucleus lateral part lateral subpartipsiSuMLL3
Supramammillar nucleus lateral part medial subpartipsiSuMLM3
Supramammillar nucleus medial partipsiSuMM2
Perifornical nucleusipsiPeF1
Retrochiasmatic area immediately caudal to the suprarchiasmatic areaipsiRChcSCh1
ThalamusipsiT1
Rhomboid thalamic nucleusipsiRh1
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV4
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus ventromedial partipsiRevm3
Subfornical organipsiSFO2
Dorsal caudal extent of the subfornical organipsiSFOdc3
Reticular thalamic nucleus rostrocaudal partipsiRtrc1.5
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI1
Zona incerta medial partipsiZIm1
Zona incerta rostromedial partipsiZIrm2
Lateral habenular nucleusipsiLHb-0.5
Medial habenular nucleusipsiMHb3
Medial habenular nucleus dorsal partipsiMHbd-0.5
Stria medullaris of the thalamusipsism3
Amygdaloid complexipsiAC3
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA-0.5
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr3
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt0
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa1
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc0
HippocampusipsiHIPP3
Anterior hippocampal formationipsiAHCf-0.5
Dorsal hippocampusipsiHIPPd-0.5
Hippocampal septalipsiHIPPs0.5
Dentate gyrusipsiDG2
Dorsal hippocampus dentate gyrusipsiDDG-0.5
Hilus of the dorsal hippocampus dentate gyrusipsiHDDG-0.5
Outer two thirds of the molecular layer of the dentate gyrusipsiDGmottL0.5
Hilus of the ventral hippocampus dentate gyrusipsiHVDG-0.5
Supragranular zone of the molecular layer of the dentate gyrusipsiDGsgmL1
Hilus of the dentate gyrusipsiHil2
Hilus of the dentate gyrus non-pyramidal cellsipsiHilnopy-0.5
Adjacent to granule cell layer of the hilus of the dentate gyrusipsiHilagr3
Mossy cells in Amarals zone 4ipsiHilagrMc2
Hilar inhibitory interneuronsipsiHilini3
Middle hilus of the dentate gyrusipsimHil-0.5
Hilus of the dentate gyrus nonprincipal neuronsipsiHilnpn-0.5
Hilus of the dentate gyrus pyramidal cellsipsiHilpy2
Hilus of the dentate gyrus spiny multipolar cellsipsiHilsm2
Hilus of the dentate gyrus small stellate cellsipsiHilss1
Hilus of the dentate gyrus medium sized stellate cellsipsiHilms1
Ammon hornipsiAmH3
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus dorsal layer stratum oriensipsiCA1dL2so-0.5
Field CA1 of hippocampus dorsal layer stratum pyramidaleipsiCA1dL3sp-0.5
Field CA1 of hippocampus layer alveusipsiCA1L1a1
Field CA1 of hippocampus stratum lacunosum-moleculareipsiCA1LM0
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad1
Field CA1 of hippocampus layer inner stratum radiatumipsiCA1L5isr-0.5
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or1
Field CA1 of hippocampus layer stratum oriens non-pyramidal cellsipsiCA1L2sonpy-0.5
Field CA1 of hippocampus ventral partipsiCA1v2
Field CA1b of hippocampusipsiCA1b-0.5
Field CA1bc of hippocampusipsiCA1bcY-0.5
Field CA1c of hippocampusipsiCA1-c-0.5
Field CA1 of hippocampus septal poleipsiCA1sp-2
Non-pyramidal cells of the alveus border of field CA1 of hippocampusipsiCA1abnpy-0.5
Field CA2 of hippocampusipsiCA21
Field CA2 of hippocampus layer stratum radiatumipsiCA2rad1
Field CA2 of hippocampus layer stratum oriensipsiCA2or1
Field CA2 of hippocampus layer stratum oriens non-pyramidal cellsipsiCA2L2sonpy-0.5
Field CA2 of hippocampus layer alveusipsiCA2L1a1
Field CA2 of hippocampus septal partipsiCA2s3
Non-pyramidal cells of the alveus border of field CA2 of hippocampusipsiCA2abnpy-0.5
Field CA3 of hippocampusipsiCA32
Field CA3 of hippocampus dorsal partipsiCA3d-0.5
Field CA3 of hippocampus stratum lacunosum-moleculareipsiCA3lm-0.5
Field CA3 of hippocampus layer stratum lacunosumipsiCA3L6sla-0.5
Field CA3 of hippocampus layer stratum moleculareipsiCA3L7sm-0.5
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad1
Field CA3 of hippocampus layer stratum lucidumipsiCA3sl-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum oriensipsiCA3or1
Field CA3 of hippocampus layer stratum oriens non-pyramidal cellsipsiCA3L2sonpy-0.5
Field CA3 of hippocampus layer alveusipsiCA3L1a1
Septal part of the field CA3 of hippocampusipsiSCA33
Field CA3c of hippocampusipsiCA3c-0.5
Field CA3a of hippocampusipsiCA3a-0.5
Field CA3bc of hippocampusipsiCA3bc-0.5
Non-pyramidal cells of the alveus border of field CA3 of hippocampusipsiCA3abnpy-0.5
SubiculumipsiS1
Subiculum layer 4 pyramidal cellsipsiSuL4pc1
Septohippocampal nucleusipsiSHi1
Oriens layer of the hippocampusipsiOr-0.5
Alveus of the hippocampusipsialv-2
Fimbria fornix regionipsififo-2
Fornixipsif-2
Region around the fornixipsiraf-0.5
Fimbriaipsifimb-2
Ventral hippocampal commissureipsivhc1
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt1
Retrosplenial agranular cortexipsiRSA-0.5
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Posterior cingulate cortexipsiPCC1
Prelimbic cortexipsiPrL-0.5
Prelimbic cortex dorsal partipsiPrLd0.5
Prelimbic cortex deep layersipsiPrLDL1
Prelimbic cortex ventral partipsiPrLv0.5
Infralimbic cortexipsiIL3
Infralimbic cortex rostral partipsiILR2.5
Frontal cortex area 2ipsiFr20
Agranular insular cortex dorsal part deep layersipsiAIDdL0
Dorsal peduncular cortex deep layersipsiDPdL-0.5
Orbitofrontal cortexipsiOrFCx-0.5
Orbital cortexipsiOrC3
Medial orbital cortexipsiMO2
Medial orbital cortex deep layersipsiMOcxdL-0.5
Ventral orbital cortexipsiVO2
Ventrolateral orbital area deep layersipsiVLOd1
Interpeduncular nucleusipsiIP1.5
Interpeduncular nucleus apical subnucleusipsiIPA3
Interpeduncular nucleus caudal subnucleusipsiIPC2
Interpeduncular nucleus central subnucleusipsiIPRc2
Dorsal part of the interpeduncular nucleus central subnucleusipsiIPRcd2
Interpeduncular nucleus dorsal subnucleus magnocellular partipsiIPRm2
Interpeduncular nucleus intermediate subnucleusipsiIPI0.5
Interpeduncular nucleus lateral subnucleusipsiIPL3
Ventral corners of the caudalmost lateral interpeduncular nucleusipsiVIPCML1
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc0
Anterior olfactory cortexipsiOCOA3
Dorsal septumipsiDSER-0.5
Dorsal medial septumipsiDMS3
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc3
Lateral septal nucleus caudal part dorsal zoneipsiLScd1
Lateral septal nucleus most caudal aspectipsiLSmca1
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus dorsolateral partipsiLSDL0.5
Lateral septal nucleus intermediate partipsiLSI0
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl-2
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV1
Lateral septal nucleus ventral partipsiLSV0
Lateral septal nucleus ventrolateral partipsiLSvl0.5
Lateral septal nucleus intermediolateral partipsiLSiL0.5
Anteroposterior extension of the lateral septal nucleusipsiLSap0
Ventroposterior extension of the lateral septal nucleusipsiLSvp0
Posterior septal complexipsiPSC3
Septofimbrial nucleusipsiSFi3
Triangular septal nucleusipsiTS1
Dorsal triangular septal nucleusipsiDTS3
Triangular septal nucleus dorsal halfipsiTSdh1
4th ventricleipsi4V-0.5
Lateral spinal nucleus C1ipsiLSpC1-0.5
Spinal cord layers C1ipsiSCLC12
Area X C1ipsiSCL10C1-0.5
Deep dorsal horn C1ipsiDDHC1-0.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Lateral spinal nucleus C2ipsiLSpC2-0.5
Spinal cord layers C2ipsiSCLC22
Area X C2ipsiSCL10C2-0.5
Deep dorsal horn C2ipsiDDHC2-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Lateral spinal nucleus C3ipsiLSpC3-0.5
Spinal cord layers C3ipsiSCLC31
Area X C3ipsiSCL10C3-0.5
Deep dorsal horn C3ipsiDDHC3-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Lateral spinal nucleus C4ipsiLSpC4-0.5
Spinal cord layers C4ipsiSCLC41
Area X C4ipsiSCL10C4-0.5
Deep dorsal horn C4ipsiDDHC4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Lateral spinal nucleus C5ipsiLSpC5-0.5
Spinal cord layers C5ipsiSCLC51
Area X C5ipsiSCL10C5-0.5
Deep dorsal horn C5ipsiDDHC5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Cervical segment 6ipsiCS6-0.5
Lateral spinal nucleus C6ipsiLSpC6-0.5
Spinal cord layers C6ipsiSCLC61
Area X C6ipsiSCL10C6-0.5
Deep dorsal horn C6ipsiDDHC6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 1 C6ipsiSCL1C6-0.5
Cervical segment 7ipsiCS7-0.5
Lateral spinal nucleus C7ipsiLSpC7-0.5
Spinal cord layers C7ipsiSCLC71
Area X C7ipsiSCL10C7-0.5
Deep dorsal horn C7ipsiDDHC7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Spinal cord layer 1 C7ipsiSCL1C7-0.5
Cervical segment 8ipsiCS8-0.5
Lateral spinal nucleus C8ipsiLSpC8-0.5
Spinal cord layers C8ipsiSCLC81
Area X C8ipsiSCL10C8-0.5
Deep dorsal horn C8ipsiDDHC8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Spinal cord layer 1 C8ipsiSCL1C8-0.5
Thoracal segment 1ipsiT1-0.5
Lateral spinal nucleus T1ipsiLSpT1-0.5
Spinal cord layers T1ipsiSCLT11
Area X T1ipsiSCL10T1-0.5
Deep dorsal horn T1ipsiDDHT1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Lateral spinal nucleus T2ipsiLSpT2-0.5
Area X T2ipsiSCL10T2-0.5
Deep dorsal horn T2ipsiDDHT2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Lateral spinal nucleus T3ipsiLSpT3-0.5
Area X T3ipsiSCL10T3-0.5
Deep dorsal horn T3ipsiDDHT3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Lateral spinal nucleus T4ipsiLSpT4-0.5
Area X T4ipsiSCL10T4-0.5
Deep dorsal horn T4ipsiDDHT4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Lateral spinal nucleus T5ipsiLSpT5-0.5
Area X T5ipsiSCL10T5-0.5
Deep dorsal horn T5ipsiDDHT5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Lateral spinal nucleus T6ipsiLSpT6-0.5
Area X T6ipsiSCL10T6-0.5
Deep dorsal horn T6ipsiDDHT6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Lateral spinal nucleus T7ipsiLSpT7-0.5
Area X T7ipsiSCL10T7-0.5
Deep dorsal horn T7ipsiDDHT7-0.5
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Lateral spinal nucleus T8ipsiLSpT8-0.5
Area X T8ipsiSCL10T8-0.5
Deep dorsal horn T8ipsiDDHT8-0.5
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Lateral spinal nucleus T9ipsiLSpT9-0.5
Area X T9ipsiSCL10T9-0.5
Deep dorsal horn T9ipsiDDHT9-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Lateral spinal nucleus T10ipsiLSpT10-0.5
Area X T10ipsiSCL10T10-0.5
Deep dorsal horn T10ipsiDDHT10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Lateral spinal nucleus T11ipsiLSpT11-0.5
Area X T11ipsiSCL10T11-0.5
Deep dorsal horn T11ipsiDDHT11-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Lateral spinal nucleus T12ipsiLSpT12-0.5
Area X T12ipsiSCL10T12-0.5
Deep dorsal horn T12ipsiDDHT12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Lateral spinal nucleus T13ipsiLSpT13-0.5
Area X T13ipsiSCL10T13-0.5
Deep dorsal horn T13ipsiDDHT13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Lateral spinal nucleus L1ipsiLSpL1-0.5
Area X L1ipsiSCL10L1-0.5
Deep dorsal horn L1ipsiDDHL1-0.5
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Lateral spinal nucleus L2ipsiLSpL2-0.5
Area X L2ipsiSCL10L2-0.5
Deep dorsal horn L2ipsiDDHL2-0.5
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Lateral spinal nucleus L3ipsiLSpL3-0.5
Area X L3ipsiSCL10L3-0.5
Deep dorsal horn L3ipsiDDHL3-0.5
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Lateral spinal nucleus L4ipsiLSpL4-0.5
Area X L4ipsiSCL10L4-0.5
Deep dorsal horn L4ipsiDDHL4-0.5
Spinal cord layer 5 L4ipsiSCL5L4-0.5
Lateral spinal nucleus L5ipsiLSpL5-0.5
Area X L5ipsiSCL10L5-0.5
Deep dorsal horn L5ipsiDDHL5-0.5
Spinal cord layer 5 L5ipsiSCL5L5-0.5
Lateral spinal nucleus L6ipsiLSpL6-0.5
Area X L6ipsiSCL10L6-0.5
Deep dorsal horn L6ipsiDDHL6-0.5
Spinal cord layer 5 L6ipsiSCL5L6-0.5
Lateral spinal nucleus S1ipsiLSpS1-0.5
Area X S1ipsiSCL10S1-0.5
Deep dorsal horn S1ipsiDDHS1-0.5
Spinal cord layer 5 S1ipsiSCL5S1-0.5
Lateral spinal nucleus S2ipsiLSpS2-0.5
Area X S2ipsiSCL10S2-0.5
Deep dorsal horn S2ipsiDDHS2-0.5
Spinal cord layer 5 S2ipsiSCL5S2-0.5
Lateral spinal nucleus S3ipsiLSpS3-0.5
Area X S3ipsiSCL10S3-0.5
Deep dorsal horn S3ipsiDDHS3-0.5
Spinal cord layer 5 S3ipsiSCL5S3-0.5
Lateral spinal nucleus S4ipsiLSpS4-0.5
Area X S4ipsiSCL10S4-0.5
Deep dorsal horn S4ipsiDDHS4-0.5
Spinal cord layer 5 S4ipsiSCL5S4-0.5
Lateral spinal nucleus Co1ipsiLSpCo1-0.5
Deep dorsal horn Co1ipsiDDHCo1-0.5
Lateral spinal nucleus Co2ipsiLSpCo2-0.5
Deep dorsal horn Co2ipsiDDHCo2-0.5
Lateral spinal nucleus Co3ipsiLSpCo3-0.5
Deep dorsal horn Co3ipsiDDHCo3-0.5
Stomach wallipsiOrgsStomWS-0.5
Vomeronasal organipsiOrgVNO-0.5
Trachea sideipsiOrgsTras2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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