University of Rostock

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Rat connectome



Jaw movement motor cortex left


Abbreviation
JMCx
Color       
Superior regionsOrofacial motor cortex

SynonymsAbbr.Language
Jaw movement motor cortexJMCx 
Anterior rhythmical jaw movement area Eng
Jaw motor area Eng
Primary motor jaw area Eng

SubregionsSide
Central part of jaw motor arealeft
Jaw movement motor cortex dorsolateral partleft
Jaw open cortexleft
Primary motor jaw area layersleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG2.5
Red nucleusipsiR2.5
Pararubral nucleusipsiPaR2.5
Superior colliculus ventrolateral partipsiSCVL2.5
Substantia nigra A9ipsiSN-2
Pons rostral partipsiPro-2
Pontine nucleiipsiPn2.5
Reticular systemipsiRF-0.5
Medial reticular formationipsiRFm2.5
Reticular formation adjacent to the principal sensory trigeminal nucleusipsiARFPr52
Mesencephalic reticular formation caudal partipsiMRFc1
Parabrachial nucleus ventral partipsiPBV1.5
Lateral reticular nucleusipsiLRt2.5
Subcoeruleus nucleus ventral partipsiSubCV-2
Intertrigeminal nucleusipsiI52
Supratrigeminal nucleusipsiSu51
Rostral part of the supratregeminal nucleusipsiSu5R3
Principal sensory trigeminal nucleusipsiPr53
Principal sensory trigeminal nucleus caudal partipsiPr5ca1
Principal sensory trigeminal nucleus dorsal partipsiPr5D2
Principal sensory trigeminal nucleus rostral partipsiPr5ro3
Rostral part of interpositus subnucleus of trigeminal sensory complexipsiSp5ncinR3
Medulla oblongata rostral partipsiMeObR-2
Lateral hypothalamic areaipsiLH1.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
ThalamusipsiT-0.5
Central medial thalamic nucleusipsiCM2.5
Paracentral thalamic nucleusipsiPC2.5
Rhomboid thalamic nucleusipsiRh2.5
Posterior thalamic nuclear groupipsiPo2.5
Ventrolateral thalamic nucleusipsiVL2.5
Ventral posterior thalamic complex lateral partipsiVPTL-0.5
Ventral posterior thalamic complex medial partipsiVPTm-0.5
Ventromedial thalamic nucleusipsiVM2.5
Ventroposterior lateral thalamic nucleusipsiVPLTNG2.5
Posterior groupipsiPTG-0.5
Reticular thalamic nucleusipsiRt-2
Zona incertaipsiZI1.5
Ventromedial edge of the internal capsuleipsivmic-2
Cerebral peduncle basal partipsicp-2
Basolateral amygdaloid nucleusipsiBL2.5
Lateral amygdaloid nucleusipsiLA2
Caudate putamenipsiCPu2.5
Subthalamic nucleusipsiSTh1.5
Insular cortexipsiICX2.5
Agranular insular cortexipsiAI1
Agranular insular cortex ventral part jaw movement areaipsiAIVjm1
Granular insular cortexipsiGI-0.5
Hindlimb motor cortex caudal partipsiHMCxC-0.5
Rostral whisker motor areaipsiRWMA-0.5
Primary somatosensory cortexipsiS12.5
Pyramidal tractipsipy-2
Central graycontraCG1
Red nucleuscontraR1
Pararubral nucleuscontraPaR1
Superior colliculus ventrolateral partcontraSCVL1
Pontine nucleicontraPn2
Medial reticular formationcontraRFm1.5
Reticular formation adjacent to the principal sensory trigeminal nucleuscontraARFPr53
Mesencephalic reticular formation caudal partcontraMRFc1
Parabrachial nucleus ventral partcontraPBV1
Lateral reticular nucleuscontraLRt1
Subcoeruleus nucleus ventral partcontraSubCV-2
Intertrigeminal nucleuscontraI53
Supratrigeminal nucleuscontraSu51
Rostral part of the supratregeminal nucleuscontraSu5R2
Principal sensory trigeminal nucleus dorsal partcontraPr5D3
Lateral hypothalamic areacontraLH1
ThalamuscontraT1
Central medial thalamic nucleuscontraCM1
Paracentral thalamic nucleuscontraPC1
Rhomboid thalamic nucleuscontraRh1
Posterior thalamic nuclear groupcontraPo1
Ventrolateral thalamic nucleuscontraVL1
Ventromedial thalamic nucleuscontraVM1
Ventroposterior lateral thalamic nucleuscontraVPLTNG1
Zona incertacontraZI1
Basolateral amygdaloid nucleuscontraBL1
Lateral amygdaloid nucleuscontraLA1
Caudate putamencontraCPu3
Subthalamic nucleuscontraSTh1
Insular cortexcontraICX3
Agranular insular cortexcontraAI1
Agranular insular cortex ventral part jaw movement areacontraAIVjm1
Granular insular cortexcontraGI-0.5
Jaw movement motor cortexcontraJMCx3
Primary somatosensory cortexcontraS13

Input from

NameSideAbbr.WeightDetails
Caudal midbrainipsicMEC2.5
Substantia nigra A9ipsiSN-2
Locus coeruleusipsiLC2.5
Pontine nucleiipsiPn3
Reticular systemipsiRF1
Dorsal raphe nucleusipsiDR2.5
Lateral hypothalamic areaipsiLH1.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
ThalamusipsiT-0.5
Central medial thalamic nucleusipsiCM2.5
Paracentral thalamic nucleusipsiPC2.5
Rhomboid thalamic nucleusipsiRh2.5
Posterior thalamic nuclear groupipsiPo2.5
Ventrolateral thalamic nucleusipsiVL2.5
Ventral posterior thalamic complex lateral partipsiVPTL-0.5
Ventromedial thalamic nucleusipsiVM2.5
Ventroposterior lateral thalamic nucleusipsiVPLTNG2.5
Posterior groupipsiPTG-0.5
Reticular thalamic nucleusipsiRt-2
Zona incertaipsiZI1.5
Ventromedial part of the internal capsuleipsiicvm-2
Cerebral peduncle basal partipsicp-2
Basolateral amygdaloid nucleusipsiBL2.5
Lateral amygdaloid nucleusipsiLA2
Ventral pallidumipsiVP2.5
Subthalamic nucleusipsiSTh1.5
Cerebral cortex layer 3ipsiCCL3-0.5
Cerebral cortex layer 5ipsiCCL5-0.5
Agranular insular cortexipsiAI3
Agranular insular cortex layer 3ipsiAIL31
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Granular insular cortexipsiGI3
Granular insular cortex layer 3ipsiGIL34
Insular cortex layer 3ipsiICXL3-0.5
Insular cortex layer 5ipsiICXL5-0.5
Primary somatosensory cortexipsiS12.5
Pyramidal tractipsipy-2
Caudal midbraincontracMEC1
Locus coeruleuscontraLC2
Pontine nucleicontraPn3
Dorsal raphe nucleuscontraDR1
Lateral hypothalamic areacontraLH1
ThalamuscontraT1
Central medial thalamic nucleuscontraCM1
Paracentral thalamic nucleuscontraPC1
Rhomboid thalamic nucleuscontraRh1
Posterior thalamic nuclear groupcontraPo1
Ventrolateral thalamic nucleuscontraVL1
Ventromedial thalamic nucleuscontraVM1
Ventroposterior lateral thalamic nucleuscontraVPLTNG1
Zona incertacontraZI1
Basolateral amygdaloid nucleuscontraBL1
Lateral amygdaloid nucleuscontraLA1
Ventral pallidumcontraVP1
Subthalamic nucleuscontraSTh1
Agranular insular cortexcontraAI3
Agranular insular cortex ventral part jaw movement areacontraAIVjm-0.5
Granular insular cortexcontraGI3
Jaw movement motor cortexcontraJMCx3
Primary somatosensory cortexcontraS13

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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