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Rat connectome



Nucleus of the horizontal limb of the diagonal band right


Abbreviation
HDB
Color       
Superior regionsDiagonal band of Broca

SynonymsAbbr.Language
 NDB_h 
 nhdb 
 NHDB 
Horizontal nucleus of the diagonal band  
Horizontal limbs of the diagonal band Eng
Nucleus of the horizontal limb of the diagonal bandHDBEng
Horizontal limb of the diagonal band  
Horizontal nucleus of the diagonal band of Broca Eng
Diagonal band nucleus horizontal limbDBh 

SubregionsSide
Large neurons of the nucleus of the horizontal limb of the diagonal bandright
Lateral part of the nucleus of the horizontal limb of the diagonal bandright
Nucleus of the horizontal limb of the diagonal band angular partright
Nucleus of the horizontal limb of the diagonal band caudal partright
Nucleus of the horizontal limb of the diagonal band caudomedial partright
Nucleus of the horizontal limb of the diagonal band dorsal partright
Nucleus of the horizontal limb of the diagonal band intermediate partright
Nucleus of the horizontal limb of the diagonal band medial partright
Nucleus of the horizontal limb of the diagonal band middle partright
Nucleus of the horizontal limb of the diagonal band rostral partright
Nucleus of the horizontal limb of the diagonal band ventral partright
Nucleus of the horizontal limb of the diagonal band caudolateral partright
Lateral intermediate part of the nucleus of the horizontal limb of the diagonal bandright
Nucleus of the horizontal limb of the diagonal band core partright
Nucleus of the horizontal limb of the diagonal band marginal partright
Nucleus of the horizontal limb of the diagonal band ventrolateral partright

Output to

NameSideAbbr.WeightDetails
Caudal midbraincontracMEC1.5
Central graycontraCG1
Nuclei of the lateral lemniscuscontraNLL1
Red nucleuscontraR1
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg0.5
Ventral tegmental nucleuscontraVTg0.5
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg1.5
PonscontraP1
A5 noradrenaline cellscontraA50
Locus coeruleuscontraLC0.5
Nucleus incertuscontraNI1
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Lateral parabrachial nucleuscontraLPB0.5
Dorsal raphe nucleuscontraDR1
Median raphe nucleuscontraMnR1
Raphe magnus nucleuscontraRMg-0.5
Retrotrapezoid nucleuscontraRTN0
Inferior salivatory nucleuscontraIS0
Superior salivatory nucleuscontraSuS0
Nucleus of the horizontal limb of the diagonal bandcontraHDB2
Nucleus of the vertical limb of the diagonal bandcontraVDB0
Substantia innominatacontraSI3
Magnocellular preoptic nucleuscontraMCPO-0.5
Anteroventral periventricular nucleus 2contraAVPV20.5
Supramammillar nucleuscontraSuM3
Submedius thalamic nucleuscontraSub1
Reticular thalamic nucleuscontraRt1
Lateral habenular nucleus medial partcontraLHbM3
Medial habenular nucleuscontraMHb-0.5
Peripallidal regioncontraPePa0
Subpallidal regioncontraSuPa2
Anterodorsal one third hippocampuscontraHIPPADot1
Dorsal hippocampuscontraHIPPd3
Ventral hippocampuscontraHIPPv-0.5
Anterior cingulate cortexcontraACC3
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL2
Medial agranular prefrontal cortexcontraAGm1
Primary visual cortexcontraV1-0.5
Secondary visual cortex lateral areacontraV2L-0.5
Interpeduncular nucleus caudal subnucleuscontraIPC0.5
Interpeduncular nucleus intermediate subnucleuscontraIPI0.5
Interpeduncular nucleus lateral subnucleuscontraIPL0.5
Olfactory bulb A16contraMOB0
Cervical segment 7contraCS7-1
Caudal midbrainipsicMEC3
Central grayipsiCG3
Central gray mesencephalic part inferior colliculus levelipsiCGMinf-1
Central gray mesencephalic part superior colliculus levelipsiCGMsc-1
Nuclei of the lateral lemniscusipsiNLL1
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Red nucleusipsiR1
Central tegmental fieldipsiTGAC1
Central tegmental field dorsal partipsiTGACd0
Rostromedial tegmental nucleusipsiRMTg1
Substantia nigra A9ipsiSN1
Ventral tegmental area A10ipsiVTA3
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
Edinger Westphal nucleusipsiEW2
Cerebellar cortexipsiCERC0
PonsipsiP2
A5 noradrenaline cellsipsiA50
Locus coeruleusipsiLC1
Nucleus incertusipsiNI3
Ventral reticular formationipsiVRF0
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB1
Medulla oblongataipsiMeOb1
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR1.5
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus central partipsiDRcep1
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus rostral partipsiDRr1
Median raphe nucleusipsiMnR3
Paramedian raphe nucleusipsiPMnR-0.5
Pontine raphe nucleusipsiPnR-2
Raphe magnus nucleusipsiRMg-0.5
A1 noradrenergic cellsipsiA10
Retrotrapezoid nucleusipsiRTN0
Inferior salivatory nucleusipsiIS0
Superior salivatory nucleusipsiSuS0
Basal forebrainipsiBAF2
Endopiriform systemipsiEnN3
Diagonal band of BrocaipsiDBB0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Diagonal band of Broca ventromedial partipsiDBBvm-2
Medial septal nucleusipsiMS3
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO-2
Medial preoptic areaipsiMPA2
Ventrolateral preoptic nucleusipsiVLPO0
Tuberomammillary nucleusipsiTuM1
Dorsal tuberomammillary nucleusipsiDTM-2
Ventral tuberomammillary nucleusipsiVTM-2
Ventral tuberomammillary nucleus coreipsiVTMc1
HypothalamusipsiHYPO2
Lateral hypothalamic areaipsiLH1.5
Lateral hypothalamic area medial partipsiLHAm1
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic nucleusipsiLHN1
Dorsal hypothalamic areaipsiDA-0.5
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Anteroventral periventricular nucleus 2ipsiAVPV20.5
Paraventricular hypothalamic nucleusipsiPa0
Suprachiasmatic nucleusipsiSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Medial hypothalamic groupipsiMHYPOg1
Mammillary bodyipsiCMAM3
Premammillary nucleus dorsal partipsiPMD-2
Premammillary nucleus ventral partipsiPMV2
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML-2
Perifornical nucleusipsiPeF-2
ThalamusipsiT1.5
Anteromedial thalamic nucleusipsiAM1
Central medial thalamic nucleusipsiCM2
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh2
Mediodorsal thalamic nucleusipsiMD3
Mediodorsal thalamic nucleus central partipsiMDC2
Mediodorsal thalamic nucleus medial partipsiMDM2
Mediodorsal thalamic nucleus ventral partipsiMDTV-0.5
Submedius thalamic nucleusipsiSub2
Midline group of the dorsal thalamusipsiMTN0
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe2
Subfornical organipsiSFO1
Lateral posterior thalamic nucleus laterorostral partipsiLPLR3
Lateral posterior thalamic nucleus mediorostral partipsiLPMR3
Posterior groupipsiPTG3
Reticular thalamic nucleusipsiRt3
Optic chiasmipsiox-2
HabenulaipsiHAB2
Habenular commissureipsihbc-0.5
Lateral habenular nucleusipsiLHb1
Lateral habenular nucleus lateral partipsiLHbL-0.5
Lateral habenular nucleus medial partipsiLHbM3
Lateral habenular nucleus caudal subfieldipsiLHbcs-0.5
Medial habenular nucleusipsiMHb-0.5
Amygdaloid complexipsiAC1
Basal nucleusipsiBnc2
Accessory basal nucleusipsiAB1
Basolateral amygdaloid nucleusipsiBL3
Basolateral nucleus ventromedial partipsiBLVMP-0.5
Basomedial amygdaloid nucleusipsiBM-0.5
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV-0.5
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL-1
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Central amygdaloid nucleus ventral partipsiCeV2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Medial division of the sublenticular extended amygdalaipsiSLEAm-0.5
Cortex amygdala transition zoneipsiCxA3
Olfactory amygdalaipsiOA-0.5
Anterior amygdaloid areaipsiAA-0.5
Anterior cortical amygdaloid nucleusipsiACo3
Anterior part of the posterolateral cortical nucleusipsiPLCoA-0.5
Nucleus of the lateral olfactory tractipsiLOT3
Periamygdaloid complexipsiPAC3
Medial extended amygdalaipsiMEXA-0.5
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus lateral partipsiMeLa1
Posteromedial cortical nucleusipsiPMCo-0.5
Peripallidal regionipsiPePa1
Subpallidal regionipsiSuPa2
Ventral pallidumipsiVP-1
Ventral pallidum lateral partipsiVPlp2
Accumbens nucleusipsiAc1
Lateral nucleus accumbensipsiAcl0.5
Caudate putamenipsiCPu0
Subthalamic nucleusipsiSTh0
Cerebral cortexipsiCEC1
HippocampusipsiHIPP2
Anterodorsal one third hippocampusipsiHIPPADot2
Dorsal hippocampusipsiHIPPd4
Dentate gyrusipsiDG-0.5
Ventral hippocampus dentate gyrusipsiVDG-0.5
Dentate gyrus molecular layeripsiDGmL1
Hilus of the dentate gyrusipsiHil-0.5
Hilus of the dentate gyrus NPY neuron populationipsiHilnpy-0.5
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus layer stratum lacunosumipsiCA1L6sla-0.5
Field CA1 of hippocampus layer stratum moleculareipsiCA1L7sm-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad-0.5
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Field CA1 of hippocampus NPY neuron populationipsiCA1npy-0.5
Field CA1 of hippocampus ventral partipsiCA1v-0.5
Field CA2 of hippocampus layer stratum pyramidaleipsiCA2pyr-0.5
Field CA2 of hippocampus NPY neuron populationipsiCA2npy-0.5
Field CA3 of hippocampusipsiCA3-0.5
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Field CA3 of hippocampus layer stratum lucidumipsiCA3sl-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum oriensipsiCA3or-0.5
Field CA3 of hippocampus NPY neuron populationipsiCA3npy-0.5
Field CA3 of hippocampus ventral partipsiCA3v-0.5
Field CA4 of hippocampus pyramidal layeripsiCA4Lpy-0.5
SubiculumipsiS-0.5
Subiculum dorsal partipsiSd1
Subiculum posterior partipsiSupo1
Subiculum ventral partipsiSv-0.5
Posterior hippocampusipsiHIPPpo1
Ventral hippocampusipsiHIPPv3
Hippocampal cortexipsiHIPPC-3
Granular layer of the dentate gyrusipsiGrDG-0.5
Stratum moleculare of the hippocampusipsiLNolsmo-0.5
Oriens layer of the hippocampusipsiOr-0.5
Ventral hippocampal commissureipsivhc3
PresubiculumipsiPrS-0.5
ParasubiculumipsiPaS-0.5
Entorhinal cortexipsiEnt3
Dorsolateral entorhinal cortexipsiDLEnt2.5
Lateral entorhinal cortexipsiLEnt-0.5
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Lateral entorhinal cortex dorsolateral partipsiLEntDLa-0.5
Medial entorhinal cortexipsiMEnt-0.5
Medial entorhinal cortex layer 5ipsiMEntLyL51.5
Ventrolateral entorhinal cortexipsiVLENT2.5
Ventrolateral entorhinal cortex layersipsiVLENTL2.5
Piriform cortexipsiPir3
Anterior piriform cortexipsiAPIRC-0.5
Retrosplenial regionsipsiRS-1
Retrosplenial agranular cortexipsiRSA3
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Retrosplenial granular cortexipsiRSGra3
Retrosplenial granular cortex a regionipsiRSGa-0.5
Cingulate cortexipsiCg2.5
Anterior cingulate cortexipsiACC3
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Middle cingulate cortexipsiMCC-0.5
Posterior cingulate cortexipsiPCC-0.5
Prelimbic cortexipsiPrL2.5
Retrolimbic areaipsiReLA0.5
Infralimbic cortexipsiIL3
Infralimbic cortex rostral partipsiILR2.5
NeocortexipsiNEOCX-0.5
Frontal association cortexipsiFrA3
Frontal cortex area 1ipsiFr1-0.5
Frontal cortex area 2ipsiFr22
Frontal cortex area 2 lateral partipsiFr2L1
Frontal cortex area 3ipsiFr3-0.5
Parietal association cortexipsiPtA3
Parietal cortex posterior areaipsiParP1
Temporal cortexipsiTE1
Agranular insular cortexipsiAI1
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex posterior partipsiAIP1.5
Agranular insular cortex ventral partipsiAIV2
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA362
Postrhinal cortex mid caudalipsiPORmc1
Somatomotoric regionsipsiSMR-0.5
Motoric regionsipsiM3
Lateral prefrontal cortexipsilPFC-0.5
Lateral agranular prefrontal cortexipsiAGl1.5
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm3
Sensory regionsipsiSR3
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS22
Visual regionsipsiVR3
Primary visual cortexipsiV13
Primary visual cortex layer 5ipsiV1L53
Primary visual cortex layer 6ipsiV1L63
Secondary visual cortexipsiV2-0.5
Secondary visual cortex medial area layer 5ipsiV2ML53
Secondary visual cortex medial area layer 6ipsiV2ML63
Secondary visual cortex lateral areaipsiV2L-0.5
Secondary visual cortex lateral area layer 5ipsiV2LL53
Secondary visual cortex lateral area layer 6ipsiV2LL63
Anterior medial frontal cortexipsiAMFC2
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO1
Ventrolateral orbital areaipsiVLO1
Ventrolateral orbital area posterior partipsiVLOp-0.5
Interpeduncular nucleusipsiIP4
Interpeduncular nucleus apical subnucleusipsiIPA2
Interpeduncular nucleus caudal subnucleusipsiIPC3
Interpeduncular nucleus central subnucleusipsiIPRc3
Interpeduncular nucleus dorsal subnucleusipsiIPRd1
Interpeduncular nucleus intermediate subnucleusipsiIPI1
Interpeduncular nucleus lateral subnucleusipsiIPL2.5
Interpeduncular nucleus medial part middle partipsiIPMM3
Ventroposterior portion of the interpeduncular nucleus rostral subnucleusipsiIPRvp2
Interpeduncular nucleus rostral subnucleus central partipsiIPRce3
Olfactory bulb A16ipsiMOB4
Lateral olfactory bulbipsiMOBL-0.5
Anterior olfactory nucleusipsiAON3
Olfactory tubercleipsiTuO2.5
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc-0.5
Mid-lateral septumipsimiLS3
Triangular septal nucleusipsiTS3
Cervical segment 1ipsiCS10
Cervical segment 7ipsiCS7-1
Olfactory epitheliumipsiOLfEpi3

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG0.5
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Retrorubral nucleuscontraRR1
Locus coeruleuscontraLC0
Nucleus incertus pars dissipatacontraNId1
Pontine sublaterodorsal nucleuscontraPsLdn1
Lateral parabrachial nucleus dorsal partcontraLPBD1
Parabrachial nucleus external divison lateral partcontraPBeDL1
Parabrachial nucleus external divison medial partcontraPBeDM1
Gigantocellular reticular nucleuscontraGi-0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Nucleus of the solitary tractcontraSol0
Dorsal raphe nucleuscontraDR0
Dorsal raphe nucleus lateral wingcontraDRlw0
Dorsal raphe nucleus medial partcontraDRNM0
Linear oral nucleus of the raphecontraLIOR0
Superior central raphe nucleuscontraCS0
Raphe magnus nucleus rostral partcontraRMgR2
Ventral lateral medulla oblongatacontraMVL2
A1 noradrenergic cellscontraA11
Basal forebraincontraBAF-0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB2
Nucleus of the vertical limb of the diagonal bandcontraVDB0
Medial septal nucleuscontraMS2
Magnocellular preoptic nucleuscontraMCPO-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Supramammillar nucleuscontraSuM1
Perifornical nucleuscontraPeF-0.5
Anterior group of the dorsal thalamuscontraATN0.5
Central amygdaloid nucleuscontraCe0
Peripallidal regioncontraPePa0
Subpallidal regioncontraSuPa0
Dentate gyruscontraDG0
Interpeduncular nucleuscontraIP1
Olfactory bulb A16contraMOB0
Central grayipsiCG3
Central gray mesencephalic part ventral regionipsiCGMv-0.5
Central gray mesencephalic part ventrolateral regionipsiCGMvL-0.5
Medial longitudinal fasciculusipsimlf-0.5
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG1
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc2
Dorsolateral periaqueductal gray rostral partipsiPAGdlr2
Periaqueductal gray caudal dorsolateral partipsiPAGLDC2
Periaqueductal gray rostrocaudal extentipsiPAGroe2
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Ventrolateral periaqueductal gray caudal partipsiPAGvlc2
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Periventricular gray matteripsiPVG3
Red nucleusipsiR-2
Superior colliculusipsiSC0
Central tegmental fieldipsiTGAC1
Ventral midbrain tegmentumipsiVeMT1
Substantia nigra A9ipsiSN1
Substantia nigra compact partipsiSNC1
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 lateral partipsiVTAL2.5
Ventral tegmental area A10 medial partipsiVTAM2
Caudal linear nucleus of the rapheipsiCLi2
Retrorubral nucleusipsiRR3
Laterodorsal tegmental nucleusipsiLDTg4
Ventral tegmental nucleusipsiVTg1
Pedunculopontine tegmental nucleusipsiPPTg3
Edinger Westphal nucleusipsiEW1.5
Locus coeruleusipsiLC3
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId3
Nucleus incertus rostral partipsiNIR3
Pons caudal partipsiPca1
Pontine sublaterodorsal nucleusipsiPsLdn1
Reticulotegmental nucleus of the ponsipsiRtTg-0.5
Pontine nucleiipsiPn-0.5
Prepositus nucleusipsiPr1
Mesencephalic reticular formationipsiMRF2
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF0
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus dorsal partipsiLPBD2
Parabrachial nucleus external divison lateral partipsiPBeDL2
Parabrachial nucleus external divison medial partipsiPBeDM2
Parabrachial nucleus medialipsiPBnMe3
Medial parabrachial nucleus external partipsiMPBE-0.5
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt-0.5
Medullary reticular nucleus dorsal partipsiMdDd2
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Raphe nucleiipsiRAN2
Dorsal raphe nucleusipsiDR4
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus lateral partipsiDRLa1
Dorsal raphe nucleus lateral wingipsiDRlw0.5
Dorsal raphe nucleus medial partipsiDRNM1.5
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus rostral tipipsiDRrt1
Midrostrocaudal levels through the dorsal raphe nucleusipsiDRmirc3
Linear oral nucleus of the rapheipsiLIOR1
Median raphe nucleusipsiMnR3
Medial raphe nucleusipsiMeR2
Superior central raphe nucleusipsiCS3
Pontine raphe nucleusipsiPnR3
Raphe magnus nucleusipsiRMg1
Raphe magnus nucleus rostral partipsiRMgR2
Ventral lateral medulla oblongataipsiMVL3
A1 noradrenergic cellsipsiA13
A2 noradrenergic cellsipsiA22
Inferior oliveipsiIO-0.5
Paragigantocellular reticular nucleusipsiPGi1
Dorsal paragigantocellular nucleusipsiDPGi1
Basal forebrainipsiBAF-2
Endopiriform systemipsiEnN3
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Nucleus of the vertical limb of the diagonal band dorsal partipsiVDBDo-2
Most lateral portion of the diagonal band of BrocaipsimLDBB-0.5
Diagonal band of Broca ventromedial partipsiDBBvm-2
Medial septal nucleusipsiMS2
Most lateral portion of the medial septal nucleusipsiMSmLa-0.5
Substantia innominataipsiSI2
Substantia innominata dorsal partipsiSID1
Substantia innominata ventral partipsiSIV1
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA1
Tuberomammillary nucleusipsiTuM2
Tuberomammillary nucleus lateral partipsiTuML1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic nucleusipsiLHN2
Anterior hypothalamic areaipsiAHA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo2
Subparaventricular zoneipsiSuPZ-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Region closely adjoining the paraventricular hypothalamic nucleusipsiPeriVAca-0.5
Suprachiasmatic nucleus dorsomedial partipsiSCnDM0
Suprachiasmatic nucleus ventrolateral partipsiSCnVL0
Medial hypothalamic groupipsiMHYPOg1
Incerto hypothalamic areaipsiicHYPO1
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral part lateral subpartipsiSuMLL1
Supramammillar nucleus lateral part medial subpartipsiSuMLM1
Supramammillar nucleus medial partipsiSuMM1
A8 dopamine cells retrorubral groupipsiRRF0
Perifornical nucleusipsiPeF-0.5
Anterior group of the dorsal thalamusipsiATN1.5
Central medial thalamic nucleusipsiCM1
Parafascicular thalamic nucleusipsiPF1
Rhomboid thalamic nucleusipsiRh1
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleusipsiRe1
Subfornical organipsiSFO1
Posterior intralaminar thalamic nucleusipsiPIL1
Subparafascicular thalamic nucleusipsiSPF1
Zona incerta medial partipsiZIm3
Lateral habenular nucleusipsiLHb3
RetinaipsiRET-0.5
Amygdaloid complexipsiAC2
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB1
Basolateral amygdaloid nucleusipsiBL-0.5
Ventral basolateral nucleusipsiBLV-0.5
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Central amygdaloid nucleusipsiCe1
Cortex amygdala transition zoneipsiCxA3
Anterior cortical amygdaloid nucleusipsiACo3
Posterolateral cortical nucleusipsiPLCo-0.5
Nucleus of the lateral olfactory tract layer 2ipsiLOTL21
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus anteroventral partipsiMeAV1
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa1
Ventral pallidumipsiVP2
Ventral pallidum lateral partipsiVPlp-0.5
Accumbens nucleusipsiAc2
Caudate putamenipsiCPu0
Subthalamic nucleusipsiSTh0
HippocampusipsiHIPP0
Dentate gyrusipsiDG2
Hilus of the dorsal hippocampus dentate gyrusipsiHDDG-0.5
Hilus of the ventral hippocampus dentate gyrusipsiHVDG-0.5
Middle hilus of the dentate gyrusipsimHil-0.5
Ammon hornipsiAmH3
Field CA1 of hippocampusipsiCA12
Field CA1b of hippocampusipsiCA1b-0.5
Field CA1bc of hippocampusipsiCA1bcY-0.5
Field CA1c of hippocampusipsiCA1-c-0.5
Field CA1 of hippocampus septal poleipsiCA1sp1
Field CA2 of hippocampusipsiCA22
Field CA3c of hippocampusipsiCA3c-0.5
Field CA3a of hippocampusipsiCA3a-0.5
Field CA3bc of hippocampusipsiCA3bc-0.5
Ventral hippocampal commissureipsivhc1
Entorhinal cortexipsiEnt3
Piriform cortexipsiPir3
Cingulate cortex area 1 caudal partipsiCg1c0.5
Cingulate cortex area 2 caudal partipsiCg2c0.5
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL3
Frontal cortex area 2ipsiFr20.5
Agranular insular cortexipsiAI1
Agranular insular cortex posterior deep layersipsiAIPdL0.5
Perirhinal cortexipsiA352
Prefrontal cortexipsiPFC2
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary visual cortexipsiV12
Secondary visual cortexipsiV22
Orbitofrontal cortexipsiOrFCx-0.5
Lateral orbital cortexipsiLO3
Medial orbital cortexipsiMO3
Ventral orbital cortexipsiVO2
Ventrolateral orbital areaipsiVLO3
Interpeduncular nucleusipsiIP3
Olfactory bulb A16ipsiMOB2
Anterior olfactory nucleusipsiAON3
Olfactory tubercleipsiTuO3
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS2
Lateral septal nucleus most caudal aspectipsiLSmca1
Lateral septal nucleus dorsal partipsiLSD0
Lateral septal nucleus intermediate partipsiLSI0
Lateral septal nucleus ventral partipsiLSV0
Most ventral portion of the lateral septal nucleusipsiLSmV-0.5
Anteroposterior extension of the lateral septal nucleusipsiLSap0
Ventroposterior extension of the lateral septal nucleusipsiLSvp0
Triangular septal nucleusipsiTS1
Cervical segment 6ipsiCS6-0.5
Cervical segment 7ipsiCS7-0.5
Cervical segment 8ipsiCS8-0.5
Thoracal segment 1ipsiT1-0.5
Thoracal segment 10ipsiT10-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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