University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Intermediate zone S1 left


Abbreviation
izVHS1
Color       
Superior regionsVentral horn S1

SynonymsAbbr.Language
Intermediate zone S1izVHS1Eng

SubregionsSide
Spinal cord layer 7 S1left
Spinal cord layer 8 S1left

Output to

NameSideAbbr.WeightDetails
Laterodorsal tegmental nucleusipsiLDTg0
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus oral part dorsolateral partipsiPnODL1
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Dorsal column nucleiipsiDCN2
Lateral hypothalamic areaipsiLH1.5
Medial division of the hypothalamusipsiMdH2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Laterodorsal tegmental nucleuscontraLDTg0
Barringtons nucleuscontraBar0.5
Locus coeruleuscontraLC0.5
Pontine reticular nucleus oral part dorsolateral partcontraPnODL0.5
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH2
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Lateral funiculuscontralf-2
Adductor caudae dorsalis muscleipsiMuscAdCaDo1
Adductor caudae dorsalis musclecontraMuscAdCaDo1

Input from

NameSideAbbr.WeightDetails
Central gray pons dorsolateral partipsiCGPdl2
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Raphe magnus nucleusipsiRMg3
Locus coeruleuscontraLC0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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