University of Rostock

Department of Anatomy

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Rat connectome



Ventral horn S1 left


Abbreviation
VHSa1
Color       
Superior regionsSpinal cord layers S1

SynonymsAbbr.Language
Ventral horn S1VHSa1Eng

SubregionsSide
Intermediate zone S1left
Interneuron groups of layer 9 S1left
Motoneuron groups of layer 9 S1left
Spinal cord layer 9 S1left

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Central gray dorsal partipsiCGD-0.5
Central gray dorsoventral partipsiCGDV-0.5
Central gray mediolateral partipsiCGMeL-0.5
Nucleus of DarkschewitschipsiDk-0.5
Area surrounding the oculomotor complexipsiASOCS-0.5
Red nucleusipsiR-1
Inferior colliculusipsiICOL-0.5
Intercollicular nucleusipsiInCo-0.5
Commissure of the superior colliculusipsicsc-2
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layersipsiSCd-0.5
Tegmental areaipsiTGA-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus11
Simple lobuleipsiSim1
Anterior lobeipsiAnL3
Cerebellar lobule 3ipsiCERL31
Cerebellar lobule 4ipsiCERL41
Cerebellar lobule 5ipsiCERL51
Paravermal region of anterior lobeipsiPVAnL1
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 6ipsiCERL61
Posterior lobe vermisipsiPLVERM1
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC2
Lateral reticular nucleus subtrigeminal partipsiLRtS51
Nucleus of the solitary tractipsiSol1
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu-0.5
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Zona incertaipsiZI-0.5
Central amygdaloid nucleusipsiCe0.5
Posterior commissureipsipc-2
Medial geniculate nucleus medial partipsiMGM-0.5
Spinomesencephalic tractipsismT-2
Lumbar segment 1ipsiL1-1
Central graycontraCG-0.5
Tegmental areacontraTGA-0.5
Ansiform lobule crus 1contraCrus11
Simple lobulecontraSim1
Anterior lobecontraAnL-0.5
Paravermal region of anterior lobecontraPVAnL1
Cuneiforme nucleuscontraCnF-0.5
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC3
Lateral reticular nucleus subtrigeminal partcontraLRtS53
Midportion of the lateral reticular nucleuscontraMpLRt3
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Central amygdaloid nucleuscontraCe0.5
Sciatic nerveipsisci-2
Gastrocnemius muscleipsiMuscGC3
External urethral sphincter muscleipsiMuscEUS-0.5
ClitorisipsiOrgCLi-0.5
ProstateipsiOrgProst-10
Seminal vesicleipsiOrgRepSV-10
Trigone of the urinary bladderipsiOrgUrBLaT-10

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Red nucleusipsiR3
Red nucleus ventrolateral partipsiRveL-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC-0.5
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV1
Medial subnucleus reticularis ventralisipsiMSRV1
Lateral vestibular nucleusipsiLVe-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Lateral hypothalamic areaipsiLH1
Spinal cord layer 3 L2ipsiSCL3L20.5
Spinal cord layer 4 L2ipsiSCL4L20.5
Spinal cord layer 2 L2ipsiSCL2L20.5
Spinal cord layer 3 L3ipsiSCL3L30.5
Spinal cord layer 4 L3ipsiSCL4L30.5
Spinal cord layer 2 L3ipsiSCL2L30.5
Spinal cord layer 3 L4ipsiSCL3L40.5
Spinal cord layer 4 L4ipsiSCL4L40.5
Spinal cord layer 2 L4ipsiSCL2L40.5
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Laterodorsal tegmental nucleuscontraLDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg3
Locus coeruleuscontraLC1
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Gigantocellular reticular nucleus ventral partcontraGiV0.5
Medial subnucleus reticularis ventraliscontraMSRV1
Lateral paragigantocellular nucleuscontraLPGi1
Cerebral cortexcontraCEC1
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
PeritoneumipsiOrgPeri-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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