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Rat connectome



Spinal cord layer 7 S1 left


Abbreviation
SCL7S1
Color       
Superior regionsIntermediate zone S1

SynonymsAbbr.Language
Spinal cord layer 7 S1SCL7S1Eng

SubregionsSide
Posterior biceps interneurons of spinal cord layer 7 S1left
Quadriceps interneurons of spinal cord layer 7 S1left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Dorsal periaqueductal grayipsiDPAG1
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Dorsal tegmental nucleus lateral partipsiDLTN-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus11
Paramedian lobuleipsiPM2
Lateral portion of the paramedian lobuleipsiLaPM2
Simple lobuleipsiSim1
Anterior lobeipsiAnL3
Cerebellar lobule 3ipsiCERL3-0.5
Cerebellar lobule 4ipsiCERL4-0.5
Cerebellar lobule 5ipsiCERL5-0.5
Paravermal region of anterior lobeipsiPVAnL1
Caudal part of cerebellumipsiCERCca2
Cerebellar lobule 7ipsiCERL72
Cerebellar lobule 8ipsiCERL82
Cerebellar lobule 6ipsiCERL6-0.5
Posterior lobe vermisipsiPLVERM-0.5
Anterior interposed nucleusipsiAIN-0.5
Reticular systemipsiRF3
Medial pontomedullary reticular formationipsiMPomRF-0.5
Pontine reticular nucleus oral partipsiPnO1
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Dorsal part of the middle one third of the parabrachial nucleusipsiPBDmiotD3
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt3
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp-0.5
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt-0.5
Lateral reticular nucleus lateral partipsiLRtL1
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Ambiguus nucleusipsiAmb0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract lateral partipsiSolL2
Nucleus of the solitary tract medial partipsiSolM2
Raphe pallidus nucleusipsiRPa1
Rostral ventrolateral medullaipsiRVLM1
Cuneate nucleusipsiCu-0.5
Gracile nucleus median partipsiGrm2
Gracile nucleus principal partipsiGr-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi-0.5
ThalamusipsiT3
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Lateral group of the dorsal thalamusipsiLAT0
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Intralaminar nucleiipsiILN2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Medial thalamic zoneipsiMTZ0
Posterior groupipsiPTG1
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Ventral horn C1ipsiVHC11
Cervical segment 2ipsiCS23
Ventral horn C2ipsiVHC21
Cervical segment 3ipsiCS33
Ventral horn C3ipsiVHC31
Cervical segment 4ipsiCS43
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Spinal cord layer 7 C6ipsiSCL7C63
Spinal cord layer 8 C6ipsiSCL8C63
Cervical segment 7ipsiCS73
Spinal cord layer 7 C7ipsiSCL7C73
Spinal cord layer 8 C7ipsiSCL8C73
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Spinal cord layer 7 T9ipsiSCL7T93
Spinal cord layer 8 T9ipsiSCL8T93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Lumbar segment 4ipsiL43
Area X L4ipsiSCL10L43
Spinal cord layer 8 L4ipsiSCL8L43
Lumbar segment 5ipsiL53
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL63
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa23
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Sacral segment 3ipsiSa33
Interneuron groups of layer 9 S3ipsiiGL9S3-0.5
Motoneuron groups of layer 9 S3ipsiMGL9S3-0.5
Sacral segment 4ipsiSa43
MesencephaloncontraMEC3
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG3
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
CerebellumcontraCERE-0.5
Ansiform lobule crus 1contraCrus11
Paramedian lobulecontraPM2
Simple lobulecontraSim1
Anterior lobecontraAnL3
Paravermal region of anterior lobecontraPVAnL1
Caudal part of cerebellumcontraCERCca2
Anterior interposed nucleuscontraAIN-0.5
Reticular systemcontraRF3
Pontine reticular nucleus oral partcontraPnO3
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp-0.5
Caudomedial part of the lateral reticular nucleuscontraLRtcm-0.5
Caudal third of the caudomedial part of the lateral reticular nucleuscontraLRtcmCt-0.5
Lateral reticular nucleus lateral partcontraLRtL1
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Raphe pallidus nucleuscontraRPa1
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
ThalamuscontraT3
Central medial thalamic nucleuscontraCM2.5
Centrolateral thalamic nucleuscontraCL3
Paracentral thalamic nucleuscontraPC2.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Intralaminar nucleicontraILN2.5
Lateral posterior thalamic nucleuscontraLP2.5
Laterodorsal thalamic nucleuscontraLD2.5
Medial thalamic zonecontraMTZ-0.5
Posterior groupcontraPTG3
Pretectal regioncontraPRT-0.5
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc3
Septal regioncontraSER2
Cervical segment 1contraCS11.5
Ventral horn C1contraVHC14
Cervical segment 2contraCS21.5
Ventral horn C2contraVHC24
Cervical segment 3contraCS31.5
Ventral horn C3contraVHC34
Cervical segment 4contraCS41.5
Cervical segment 5contraCS51.5
Cervical segment 6contraCS61.5
Spinal cord layer 7 C6contraSCL7C63
Spinal cord layer 8 C6contraSCL8C63
Cervical segment 7contraCS71.5
Spinal cord layer 7 C7contraSCL7C73
Spinal cord layer 8 C7contraSCL8C73
Spinal cord layer 9 C7contraSCL9C7-0.5
Cervical segment 8contraCS81.5
Thoracal segment 1contraT11.5
Thoracal segment 2contraT21.5
Thoracal segment 3contraT31.5
Thoracal segment 4contraT41.5
Thoracal segment 5contraT51.5
Thoracal segment 6contraT61.5
Thoracal segment 7contraT71.5
Thoracal segment 8contraT81.5
Thoracal segment 9contraT91.5
Spinal cord layer 7 T9contraSCL7T93
Spinal cord layer 8 T9contraSCL8T93
Thoracal segment 10contraT101.5
Thoracal segment 11contraT111.5
Thoracal segment 12contraT121.5
Thoracal segment 13contraT131.5
Lumbar segment 1contraL11.5
Lumbar segment 2contraL21.5
Lumbar segment 3contraL31.5
Lumbar segment 4contraL41.5
Area X L4contraSCL10L43
Spinal cord layer 8 L4contraSCL8L43
Lumbar segment 5contraL51.5
Lumbar segment 6contraL61.5
Sacral segment 1contraSa11.5
Sacral segment 2contraSa21.5
Sacral segment 3contraSa31.5
Sacral segment 4contraSa41.5
Pelvic ganglionipsiAutoPeG-0.5
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Bulbocavernosus muscleipsiMuscBCV-10
Bulbospongiosus muscleipsiMuscbsp2
Ischiocavernosus muscleipsiMuscicav-10
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
Bulbospongiosus musclecontraMuscbsp2
Musculus abductor caudae dorsaliscontraMuscAbdCaDo-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR1
Lateral cerebellar nucleusipsiCERL0.5
Medial cerebellar nucleusipsiMed1
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regions layer 5ipsiSMRL51
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL20
Dorsal root ganglion L3ipsiDRGL30
Dorsal root ganglion L4ipsiDRGL4-0.5
Dorsal root ganglion L5ipsiDRGL51
Dorsal root ganglion L6ipsiDRGL61
Dorsal root ganglion S1ipsiDRGS12
Red nucleuscontraR0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Lateral cerebellar nucleuscontraCERL1
Medial cerebellar nucleuscontraMed3
Locus coeruleuscontraLC1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Cerebral cortexcontraCEC3
Somatomotoric regions layer 5contraSMRL51
Dorsal root ganglion S1contraDRGS12
Pelvic ganglionipsiAutoPeG-0.5
Pelvic nervesipsiAutoPN-0.5
Peronal nerveipsiperonal-0.5
Hamstring nerveipsihamstri1
Tibial nerveipsitibial-0.5
Urinary bladderipsiOrgUrBLa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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