University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Substantia nigra caudal part right


Abbreviation
SNcp
Color       
Superior regionsSubstantia nigra A9

SynonymsAbbr.Language
Caudal part of substantia nigra  
Caudal substantia nigra  
Substantia nigra caudal partSNcpEng

SubregionsSide
Caudal one third of the substantia nigraright
Caudalmost levels of the substantia nigraright
Dorsolateral part of the caudal substantia nigraright
Lateral part of the caudal extent of the substantia nigraright
Substantia nigra most ventral lamina of the caudal partright
Intermediate part of the caudal substantia nigraright

Output to

NameSideAbbr.WeightDetails
Caudate putamencontraCPu0.5
Inferior colliculusipsiICOL-0.5
Substantia nigra A9ipsiSN-0.5
Ventral tegmental area A10ipsiVTA-0.5
Amygdaloid complexipsiAC-0.5
Caudate putamenipsiCPu3
Caudal basal caudate putamenipsiCPuCB-0.5
Dorsolateral striatumipsiCPudl-0.5
Posterior caudate putamenipsiCPup2
Rostrodorsal striatumipsiCPurd-0.5
Ventral striatumipsiCPuv2
Entorhinal cortexipsiEnt-0.5

Input from

NameSideAbbr.WeightDetails
Central raphe nucleuscontraCRN1
Central grayipsiCG-0.5
Peduncularpontine nucleusipsiPPN-0.5
Pontine reticular nucleusipsiPRN-0.5
Parabrachial nucleusipsiPB-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus lateral wingipsiDRlw-0.5
Central raphe nucleusipsiCRN-0.5
Globus pallidusipsiGP-0.5
Caudate putamenipsiCPu-0.5
Subthalamic nucleusipsiSTh2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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