University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Posterior caudate putamen right


Abbreviation
CPup
Color       
Superior regionsCaudate putamen

SynonymsAbbr.Language
Caudate putamen posterior  
Caudate putamen posterior part  
Posterior striatum  
Posterior caudate putamenCPupEng

SubregionsSide
Posterior caudate putamen chemoarchitectonic compartmentsright
Posterior caudate putamen medial partright
Posterior caudate putamen ventral partright
Posterolateral part striatumright

Output to

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC1
Substantia nigra lateral partipsiSNL1.5
Substantia nigra reticular partipsiSNR1
Basal nucleus MeynertipsiB2
Parafascicular thalamic nucleusipsiPF1
Subparafascicular thalamic nucleusipsiSPF-1
Lateral subparafascicular thalamic nucleusipsiSPFL-1
Globus pallidusipsiGP2
Medial globus pallidusipsiMGP2

Input from

NameSideAbbr.WeightDetails
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5contraS1BFcdysL5-0.5
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6contraS1BFcdysL6-0.5
Posterior dygranular zone between whisker and trunk representation layer 5contraS1pdyL5-0.5
Posterior dygranular zone between whisker and trunk representation layer 6contraS1pdyL6-0.5
Substantia nigra caudal partipsiSNcp2
Substantia nigra caudolateral partipsiSNcL-0.5
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part lateral tieripsiSNCL4
Substantia nigra lateral partipsiSNL2
Substantia nigra reticular partipsiSNR-1
Ventral tegmental area A10ipsiVTA-1
Ventral tegmental area A10 dorsal partipsiVTAd2
Peripeduncular nucleusipsiPP2
Posterior hypothalamic areaipsiPHA-0.5
A8 dopamine cells retrorubral groupipsiRRF-0.5
Parafascicular thalamic nucleusipsiPF1
Posterior limitans thalamic nucleusipsiPLi2
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT3
Suprageniculate thalamic nucleusipsiSG2
Posterior intralaminar thalamic nucleusipsiPIL3
Lateral posterior thalamic nucleusipsiLP-1
Caudomedial lateral posterior thalamic nucleusipsiLPcm2
Medial part of the mediocaudal part of the lateral posterior thalamic nucleusipsiLPcmm2
Medial part of the lateral posterior thalamic nucleus mediocaudal partipsiLPMCM2
Subparafascicular thalamic nucleusipsiSPF1
Lateral subparafascicular thalamic nucleusipsiSPFL1
Frontal association cortexipsiFrA-0.5
Primary somatosensory cortex forelimb region layer 5ipsiS1FL53
Primary somatosensory cortex forelimb region layer 6ipsiS1FL63
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5ipsiS1BFcdysL53
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6ipsiS1BFcdysL63
Posterior dygranular zone between whisker and trunk representation layer 5ipsiS1pdyL53
Posterior dygranular zone between whisker and trunk representation layer 6ipsiS1pdyL63
Dorsal geniculate nucleus lateral partipsiDLGl2
Marginal zone of the medial geniculateipsiMZMG-1
Medial geniculate nucleusipsiMG-0.5
Medial geniculate nucleus caudal partipsiMGc2
Medial geniculate nucleus dorsal partipsiMGD1
Medial geniculate nucleus dorsal part medial subdivisionipsiMGDm-1
Medial geniculate nucleus medial partipsiMGM3
Medial geniculate nucleus ventral partipsiMGV1
Central nucleus of the medial geniculate bodyipsiCMG1
Rostrocaudal extent of the central nucleus of the medial geniculate bodyipsiCMGrc1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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