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Rat connectome



Inferior colliculus right


Abbreviation
ICOL
Color       
Superior regionsColliculi

SynonymsAbbr.Language
Colliculus inferior  
Lateral region of the dorsal mesencephalon Eng
Inferior colliculusIC 
Inferior colliculusICOLEng

SubregionsSide
Brachium of the inferior colliculusright
Caudal part of inferior colliculusright
Central nucleus of the inferior colliculusright
Commissural nucleus of the inferior colliculusright
Commissure of the inferior nucleusright
Dorsal surface of the inferior colliculusright
Dorsomedial part of the inferior colliculusright
External cortex of the inferior colliculusright
Inferior colliculus dorsal partright
Inferior colliculus dorsolateral partright
Inferior colliculus lateral partright
Inferior colliculus medial partright
Inferior colliculus mediolateral middle partright
Inferior colliculus rostral partright
Inferior colliculus ventromedial partright
Nucleus of the brachium of the inferior colliculusright
Pericentral nucleus inferior colliculusright
Periphery of the inferior colliculusright
Rostrocaudal extent of the inferior colliculusright
Shell region of the central nucleus of the inferior colliculusright
Superficial layers around inferior colliculusright
Tonotopic axis of the inferior colliculusright
Inferior colliculus anterolateral arearight
Inferior colliculus posteromedial partright
Inferior colliculus posterolateral partright
Inferior colliculus posterodorsal partright
Inferior colliculus layersright
Median line of the inferior colliculusright
Rostral to dorsal cortex of the inferior colliculusright
Ventrolateral cortex of the inferior colliculusright
Basal part of the inferior colliculusright
Inferior colliculus borderright
Between the inferior colliculus and the adjacent periaqueductal grayright
Inferior colliculus neuronright
Rim around inferior colliculusright
Ventral rim around inferior colliculusright
Inferior colliculus ventral partright

Output to

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Nuclei of the lateral lemniscuscontraNLL4
Periaqueductal graycontraPAG0.5
Lateral periaqueductal graycontraLPAG0.5
Periaqueductal gray medial partcontraPAGm0.5
Ventrolateral periaqueductal graycontraVLPAG1
Red nucleuscontraR1
Inferior colliculuscontraICOL3
Ventral division of the caudal inferior colliculuscontraICOLCV3
Central nucleus of the inferior colliculuscontraCIC3
External cortex of the inferior colliculuscontraECIC2
Dorsal cortex of the inferior colliculuscontraDCIC-0.5
Rostrocaudal extent of the inferior colliculuscontraRCeICOL3
Superior colliculuscontraSC3
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg0
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg1.5
Pontine sublaterodorsal nucleuscontraPsLdn0.5
Pontine nucleicontraPn0
Deep mesencephalic nucleus dorsal partcontraDpMeD1
Precuneiform areacontraPCnFa-1
Ventrolateral pontine reticular formationcontravlPRF0
Lateral parabrachial nucleuscontraLPB1.5
Ventral nucleus of the trapezoid bodycontraVNTB1
Anteroventral cochlear nucleuscontraAVCON-0.5
Granule cell domains of the cochlear nucleuscontraGcCON-0.5
Posteroventral cochlear nucleuscontraPVCON-0.5
Ventral cochlear nucleuscontraVC-0.5
Raphe pallidus nucleuscontraRPa3
Rostral ventrolateral medullacontraRVLM2
Superior olivecontraSuOLi1
Lateral superior olivecontraLSO1
Superior olive dorsal ribboncontraSOCd1
Superior paraolivary nucleuscontraSPO1.5
Lateral paragigantocellular nucleuscontraLPGi0
Central amygdaloid nucleuscontraCe-0.5
Medial geniculate nucleuscontraMG1
Medial geniculate nucleus ventral partcontraMGV2
Gray matter of spinal cordcontraGMES-0.5
Cervical spinal cord layer 10contraCSegL103
Nuclei of the lateral lemniscusipsiNLL4
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG3
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray medial partipsiPAGm2
Ventrolateral periaqueductal grayipsiVLPAG2
Dorsolateral pontine nucleusipsiDLPn-1
Red nucleusipsiR1
Inferior colliculusipsiICOL3
Brachium of the inferior colliculusipsibic3
Central nucleus of the inferior colliculusipsiCIC3
External cortex of the inferior colliculusipsiECIC3
Superior colliculusipsiSC1
Commissure of the superior colliculusipsicsc-0.5
Superior colliculus intermediate white layeripsiSAI2
Superior colliculus superficial layersipsiSCs1
Optic nerve layer of the superior colliculusipsiOp3
Superior colliculus intermediate layersipsiSCi3
Superior colliculus deep layersipsiSCd3
Tectal longitudinal columnipsiTCL-0.5
Central tegmental field dorsal partipsiTGACd0
Substantia nigra A9ipsiSN0.5
Peripeduncular areaipsiPPA2
Laterodorsal tegmental nucleusipsiLDTg0
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg3
PonsipsiP-0.5
Pontine sublaterodorsal nucleusipsiPsLdn0.5
Pontine gray caudal partipsiPGCa0
Pontine gray rostral partipsiPGro0
Pontine nucleiipsiPn0
Reticular systemipsiRF-1
Deep mesencephalic nucleus dorsal partipsiDpMeD2
Pontine reticular nucleus ventral part caudalipsiPNRVC0
Ventrolateral pontine reticular formationipsivlPRF0
Pontine reticular nucleus caudal partipsiPNC0
Lateral parabrachial nucleusipsiLPB3
Gigantocellular reticular nucleusipsiGi1
Ventral nucleus of the trapezoid bodyipsiVNTB3
Cochlear nucleusipsiCON-0.5
Dorsal cochlear nucleusipsiDC-0.5
Ventral cochlear nucleusipsiVC-0.5
Vestibular ductsipsivd1
Dorsal raphe nucleusipsiDR1
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa4
Rostral ventrolateral medullaipsiRVLM2
Superior oliveipsiSuOLi3
Lateral superior oliveipsiLSO3
Superior olive dorsal ribbonipsiSOCd3
Superior paraolivary nucleusipsiSPO-0.5
Lateral paragigantocellular nucleusipsiLPGi1
Lateral paragigantocellular nucleus retrofacial partipsiLPGirf0
Paragigantocellular reticular nucleus caudal lateral partipsiPGicL0
Paragigantocellular reticular nucleus caudal medial partipsiPGicM1
Paragigantocellular reticular nucleus rostral partipsiPGiR-0.5
Paragigantocellular reticular nucleus rostral lateral partipsiPGiRL0
Paragigantocellular reticular nucleus rostral medial partipsiPGiRM1
Ventral rostromedial paragigantocellular reticular nucleusipsiPGiVRM3
Retrofacial paragigantocellular reticular nucleusipsiRPGi0
Juxtafacial paragigantocellular reticular nucleusipsiJPGi2
Basal forebrainipsiBAF-0.5
Paraventricular hypothalamic nucleusipsiPa0
Suprachiasmatic nucleusipsiSCh1
Caudal thalamusipsiCauT0
Caudal most thalamusipsiCaumT3
Central medial thalamic nucleusipsiCM2
Centre median nucleusipsiCeMe0.5
Centrolateral thalamic nucleusipsiCL2
Posterior limitans thalamic nucleusipsiPLi2
Posterior thalamic nuclear groupipsiPo3
Region intercalated between the lateral group of the dorsal thalamus and the posterior limitans thalamic nucleusipsiSGPLi2
Suprageniculate thalamic nucleusipsiSG-0.5
Ventrobasal complexipsiVB-0.5
Posterior intralaminar thalamic nucleusipsiPIL2
Rostral thalamusipsiRoT-0.5
Ventral thalamusipsiVNT-2
Lateral subparafascicular thalamic nucleusipsiSPFL2
Subparafascicular thalamic nucleus parvicellular partipsiSPFp2
Pineal glandipsiPi-0.5
Internal capsuleipsiic1
Caudal globus pallidusipsiGPc2
Medial globus pallidusipsiMGP0.5
Subthalamic nucleusipsiSTh1
Auditory regions layer 3ipsiAUL32
Auditory regions layer 4ipsiAUL42
Forelimb motor cortexipsiFMCx0
Caudal forelimb motor areaipsiCFMA0
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx0
Marginal zone of the medial geniculateipsiMZMG-1
Medial geniculate nucleusipsiMG3
Medial geniculate nucleus caudal partipsiMGc2
Medial geniculate nucleus dorsal partipsiMGD3
Medial geniculate nucleus medial partipsiMGM3
Medial geniculate nucleus ventral partipsiMGV3
Ventral to medial geniculate nucleusipsiGBvm3
Gray matter of spinal cordipsiGMES-0.5
Cervical spinal cord layer 10ipsiCSegL103
Intermediate lamina of the thoracic spinal cordipsiTSegim2
Intermediate zone of the cervical spinal cordipsiimzCSC3

Input from

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscuscontraNLL-0.5
Dorsal nucleus of the lateral lemniscuscontraDLL4
Lateral part of the dorsal nucleus of the lateral lemniscuscontraDLLL-0.5
Central part of the dorsal nucleus of the lateral lemniscuscontraDLLC-0.5
Dorsal nucleus of the lateral lemniscus caudal partcontraDLLc3
Dorsal nucleus of the lateral lemniscus medial partcontraDLLm-0.5
Intermediate nucleus of the lateral lemniscuscontraILL0
Nuclei of the lateral lemniscus rostral partcontraNLLR-0.5
Inferior colliculuscontraICOL3
Central nucleus of the inferior colliculuscontraCIC3
Dorsomedial part of the inferior colliculuscontraICOLDM3
External cortex of the inferior colliculuscontraECIC1
Inferior colliculus dorsal partcontraICOLD-0.5
Dorsal cortex of the inferior colliculuscontraDCIC3
Inferior colliculus layerscontraICOLa1
Superior colliculuscontraSC3
Superior colliculus intermediate white layercontraSAI1
Superior colliculus intermediate white layer lateral partcontraSAIL0.5
Superior colliculus intermediate white layer medial partcontraSAIM1
Superior colliculus superficial layerscontraSCs1
Intermediate gray layer of the superior colliculuscontraInG1
Superior colliculus deep layerscontraSCd1
Substantia nigra lateral partcontraSNL1
Substantia nigra lateral part anterior portioncontraSNLa0.5
Substantia nigra lateral part posterior portioncontraSNLp1
Substantia nigra lateral part rostrocaudal extentcontraSNLrce0.5
Laterodorsal tegmental nucleuscontraLDTg2
Pedunculopontine tegmental nucleuscontraPPTg2
Lateral cerebellar nucleuscontraCERL-0.5
A7 noradrenaline cellscontraA71.5
Locus coeruleuscontraLC1.5
Locus coeruleus dorsal partcontraLCD1
Locus coeruleus rostral partcontraLCRo0.5
Ventrolateral reticular formationcontraVLRF1.5
Ventrolateral pontine reticular formationcontravlPRF0
Parabrachial nucleuscontraPB-0.5
Lateral nucleus of the trapezoid bodycontraLNTB1
Medial trapezoid nucleuscontraMTz1
Supragenual nucleuscontraSGe0
Principal sensory trigeminal nucleuscontraPr50
Spinal trigeminal nucleuscontraSp5nc1
Cochlear systemcontraCOS3
Cochlear nucleuscontraCON3
Anteroventral cochlear nucleuscontraAVCON3
Anterior division of the anteroventral cochlear nucleuscontraAAVCON-0.5
Dorsal cochlear nucleuscontraDC3
Dorsal cochlear nucleus layer 3 giant cellscontraDCdLGc-0.5
Dorsal cochlear nucleus layer 2 pyramidal cellscontraDCFuPy-0.5
Dorsal cochlear nucleus multipolar cellscontraDCmuC-0.5
Posteroventral cochlear nucleuscontraPVCON3
Anterior part of the posteroventral cochlear nucleuscontraPVCONa-0.5
Ventral cochlear nucleuscontraVC3
Ventral cochlear nucleus multipolar cellscontraVCmuc-0.5
Cochlear nucleus caudal partcontraCONc-0.5
Cochlear root neuronscontraCORN0
Lateral vestibular nucleuscontraLVe3
Laterodorsal caudal medulla oblongatacontraLDCMeOb0
Cuneate nucleuscontraCu1
GracilecontraGra1
Dorsal periolivary regioncontraDPO2
Ventral periolivary nucleuscontraVPOA1
Ventromedial periolivary areacontraVMPOA-0.5
Superior olivecontraSuOLi3
Lateral superior olivecontraLSO3
Lateral limb of the lateral superior olivecontraLLLSO-0.5
Medial limb of the lateral superior olivecontraLSOmL-0.5
Medial superior olivecontraMSO1
Superior paraolivary nucleuscontraSPO1
Rostrocaudal extent of the lateral superior olivary nucleuscontraSOClrc1
Superior paraolivary nucleus ventrolateral partcontraSPOVL-0.5
Nonauditory brainstem nucleicontraNABSN1.5
Tuberomammillary nucleuscontraTuM-0.5
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR1
Lateral hypothalamic areacontraLH1
Posterior hypothalamic nucleus caudal partcontraPHCa0
Posterior hypothalamic nucleus rostral partcontraPHRo0
Arcuate nucleuscontraArc0.5
Ventral medial nucleus of the thalamuscontraVMT-0.5
Zona incertacontraZI1
RetinacontraRET3
Retina nasal partcontraRETna3
Lateral lemniscuscontrall-0.5
Temporal association cortex 1 layer 3contraTeAL30
Temporal association cortex 1 layer 4contraTeAL40
Temporal association cortex 1 layer 5contraTeAL51
Temporal association cortex 1 layer 6bcontraTeAL6b1
Temporal association cortex 1 layer 1contraTeAL10
Temporal association cortex 1 layer 2contraTeAL20
Auditory regionscontraAU3
Primary auditory cortexcontraAu12
Central cervical nucleus C1contraCeCvC13
Lateral spinal nucleus C1contraLSpC13
Area X C1contraSCL10C13
Dorsal horn C1contraDHC13
Nucleus proprius C1contraPDHC13
Spinal cord layer 1 C1contraSCL1C13
Central cervical nucleus C2contraCeCvC23
Lateral spinal nucleus C2contraLSpC23
Area X C2contraSCL10C23
Dorsal horn C2contraDHC23
Nucleus proprius C2contraPDHC23
Spinal cord layer 1 C2contraSCL1C23
Central cervical nucleus C3contraCeCvC33
Lateral spinal nucleus C3contraLSpC33
Area X C3contraSCL10C33
Dorsal horn C3contraDHC33
Nucleus proprius C3contraPDHC33
Spinal cord layer 1 C3contraSCL1C33
Central cervical nucleus C4contraCeCvC43
Lateral spinal nucleus C4contraLSpC43
Area X C4contraSCL10C43
Dorsal horn C4contraDHC43
Nucleus proprius C4contraPDHC43
Spinal cord layer 1 C4contraSCL1C43
Central cervical nucleus C5contraCeCvC53
Lateral spinal nucleus C5contraLSpC53
Area X C5contraSCL10C53
Dorsal horn C5contraDHC53
Nucleus proprius C5contraPDHC53
Spinal cord layer 1 C5contraSCL1C53
Cervical segment 6contraCS60.5
Central cervical nucleus C6contraCeCvC63
Lateral spinal nucleus C6contraLSpC63
Area X C6contraSCL10C63
Dorsal horn C6contraDHC63
Nucleus proprius C6contraPDHC63
Spinal cord layer 1 C6contraSCL1C63
Cervical segment 7contraCS70.5
Central cervical nucleus C7contraCeCvC73
Lateral spinal nucleus C7contraLSpC73
Area X C7contraSCL10C73
Dorsal horn C7contraDHC73
Nucleus proprius C7contraPDHC73
Spinal cord layer 1 C7contraSCL1C73
Cervical segment 8contraCS80.5
Central cervical nucleus C8contraCeCvC83
Lateral spinal nucleus C8contraLSpC83
Area X C8contraSCL10C83
Dorsal horn C8contraDHC83
Nucleus proprius C8contraPDHC83
Spinal cord layer 1 C8contraSCL1C83
Central cervical nucleus T1contraCeCvT13
Lateral spinal nucleus T1contraLSpT13
Area X T1contraSCL10T13
Dorsal horn T1contraDHT13
Nucleus proprius T1contraPDHT13
Spinal cord layer 1 T1contraSCL1T13
Central cervical nucleus T2contraCeCvT23
Lateral spinal nucleus T2contraLSpT23
Area X T2contraSCL10T23
Dorsal horn T2contraDHT23
Nucleus proprius T2contraPDHT23
Spinal cord layer 1 T2contraSCL1T23
Central cervical nucleus T3contraCeCvT33
Lateral spinal nucleus T3contraLSpT33
Area X T3contraSCL10T33
Dorsal horn T3contraDHT33
Nucleus proprius T3contraPDHT33
Spinal cord layer 1 T3contraSCL1T33
Central cervical nucleus T4contraCeCvT43
Lateral spinal nucleus T4contraLSpT43
Area X T4contraSCL10T43
Dorsal horn T4contraDHT43
Nucleus proprius T4contraPDHT43
Spinal cord layer 1 T4contraSCL1T43
Central cervical nucleus T5contraCeCvT53
Lateral spinal nucleus T5contraLSpT53
Area X T5contraSCL10T53
Dorsal horn T5contraDHT53
Nucleus proprius T5contraPDHT53
Spinal cord layer 1 T5contraSCL1T53
Central cervical nucleus T6contraCeCvT63
Lateral spinal nucleus T6contraLSpT63
Area X T6contraSCL10T63
Dorsal horn T6contraDHT63
Nucleus proprius T6contraPDHT63
Spinal cord layer 1 T6contraSCL1T63
Central cervical nucleus T7contraCeCvT73
Lateral spinal nucleus T7contraLSpT73
Area X T7contraSCL10T73
Dorsal horn T7contraDHT73
Nucleus proprius T7contraPDHT73
Spinal cord layer 1 T7contraSCL1T73
Central cervical nucleus T8contraCeCvT83
Lateral spinal nucleus T8contraLSpT83
Area X T8contraSCL10T83
Dorsal horn T8contraDHT83
Nucleus proprius T8contraPDHT83
Spinal cord layer 1 T8contraSCL1T83
Central cervical nucleus T9contraCeCvT93
Lateral spinal nucleus T9contraLSpT93
Area X T9contraSCL10T93
Dorsal horn T9contraDHT93
Nucleus proprius T9contraPDHT93
Spinal cord layer 1 T9contraSCL1T93
Central cervical nucleus T10contraCeCvT103
Lateral spinal nucleus T10contraLSpT103
Area X T10contraSCL10T103
Dorsal horn T10contraDHT103
Nucleus proprius T10contraPDHT103
Spinal cord layer 1 T10contraSCL1T103
Central cervical nucleus T11contraCeCvT113
Lateral spinal nucleus T11contraLSpT113
Area X T11contraSCL10T113
Dorsal horn T11contraDHT113
Nucleus proprius T11contraPDHT113
Spinal cord layer 1 T11contraSCL1T113
Central cervical nucleus T12contraCeCvT123
Lateral spinal nucleus T12contraLSpT123
Area X T12contraSCL10T123
Dorsal horn T12contraDHT123
Nucleus proprius T12contraPDHT123
Spinal cord layer 1 T12contraSCL1T123
Central cervical nucleus T13contraCeCvT133
Lateral spinal nucleus T13contraLSpT133
Area X T13contraSCL10T133
Dorsal horn T13contraDHT133
Nucleus proprius T13contraPDHT133
Spinal cord layer 1 T13contraSCL1T133
Lateral spinal nucleus L1contraLSpL13
Area X L1contraSCL10L13
Dorsal horn L1contraDHL13
Nucleus proprius L1contraPDHL13
Spinal cord layer 1 L1contraSCL1L13
Lateral spinal nucleus L2contraLSpL23
Area X L2contraSCL10L23
Dorsal horn L2contraDHL23
Nucleus proprius L2contraPDHL23
Spinal cord layer 1 L2contraSCL1L23
Lateral spinal nucleus L3contraLSpL33
Area X L3contraSCL10L33
Dorsal horn L3contraDHL33
Nucleus proprius L3contraPDHL33
Spinal cord layer 1 L3contraSCL1L33
Lateral spinal nucleus L4contraLSpL43
Area X L4contraSCL10L43
Dorsal horn L4contraDHL43
Nucleus proprius L4contraPDHL43
Spinal cord layer 3 L4contraSCL3L42
Spinal cord layer 4 L4contraSCL4L42
Spinal cord layer 1 L4contraSCL1L43
Lateral spinal nucleus L5contraLSpL53
Area X L5contraSCL10L53
Dorsal horn L5contraDHL53
Nucleus proprius L5contraPDHL53
Spinal cord layer 1 L5contraSCL1L53
Lumbar segment 6contraL60.5
Lateral spinal nucleus L6contraLSpL63
Area X L6contraSCL10L63
Dorsal horn L6contraDHL63
Nucleus proprius L6contraPDHL63
Spinal cord layer 1 L6contraSCL1L63
Sacral segment 1contraSa10.5
Sacral segment 2contraSa20.5
Lumbosacral spinal cord layers dorsal and ventral hornscontraLSSCLdv-0.5
MesencephalonipsiMEC3
Central grayipsiCG3
Central gray dorsal partipsiCGD1
Central gray dorsolateral partipsiCGDL3
Nuclei of the lateral lemniscusipsiNLL3
Dorsal nucleus of the lateral lemniscusipsiDLL3
Dorsal nucleus of the lateral lemniscus caudal partipsiDLLc3
Dorsal nucleus of the lateral lemniscus central part of the caudal partipsiDLLcc-0.5
Intermediate nucleus of the lateral lemniscusipsiILL3
Ventral nucleus of the lateral lemniscusipsiVLL3
Ventral nucleus of the lateral lemniscus inferior partipsiVLLi3
Nuclei of the lateral lemniscus rostral partipsiNLLR-0.5
Periaqueductal grayipsiPAG3
Dorsolateral periaqueductal gray caudal partipsiPAGdlc-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc-3
Lateral pontine tegmentumipsiLPTG-0.5
Red nucleusipsiR3
Red nucleus medial partipsiRmed3
Red nucleus ventral partipsiRV3
Red nucleus rostrocaudal partipsiRRC3
TectumipsiTEC0
Inferior colliculusipsiICOL3
Brachium of the inferior colliculusipsibic3
Central nucleus of the inferior colliculusipsiCIC3
External cortex of the inferior colliculusipsiECIC3
Dorsal cortex of the inferior colliculusipsiDCIC3
Inferior colliculus rostral partipsiICOLR3
Nucleus of the brachium of the inferior colliculusipsiBIC3
Superior colliculusipsiSC3
Commissure of the superior colliculusipsicsc-0.5
Superior colliculus intermediate white layeripsiSAI1
Superior colliculus intermediate white layer lateral partipsiSAIL0.5
Superior colliculus intermediate white layer medial partipsiSAIM1
Superior colliculus superficial layersipsiSCs1
Optic nerve layer of the superior colliculusipsiOp0
Superficial gray layer of the superior colliculusipsiSuG0
Superior colliculus zonal layeripsiSCzo0
Superior colliculus intermediate layersipsiSCi1
Intermediate gray layer of the superior colliculusipsiInG2
Superior colliculus deep layersipsiSCd3
Superior colliculus medial half deep layersipsimhSCdL3
Superior colliculus rostral partipsirSC1
Tegmental areaipsiTGA3
Peduncularpontine nucleus caudal levelsipsiPPNCa-0.5
Substantia nigra A9ipsiSN-0.5
Substantia nigra caudal partipsiSNcp-0.5
Substantia nigra compact partipsiSNC0
Substantia nigra lateral partipsiSNL3
Substantia nigra lateral part anterior portionipsiSNLa1
Substantia nigra lateral part posterior portionipsiSNLp3
Substantia nigra lateral part rostrocaudal extentipsiSNLrce1
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA3
Peripeduncular nucleusipsiPP1
Laterodorsal tegmental nucleusipsiLDTg2
Pedunculopontine tegmental nucleusipsiPPTg2
Rostral midbrainipsiMECRo-0.5
Dorsal surface of the midbrainipsiDSMEC-0.5
Lateral midbrainipsiLMEC-0.5
Edinger Westphal nucleusipsiEW3
A7 noradrenaline cellsipsiA71.5
Locus coeruleusipsiLC3
Locus coeruleus dorsal partipsiLCD1
Locus coeruleus rostral partipsiLCRo0.5
Reticular systemipsiRF1
Ventrolateral reticular formationipsiVLRF1.5
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus ventral partipsiPnV-0.5
Ventrolateral pontine reticular formationipsivlPRF0.5
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleus caudal partipsiCnFc-2
Parabrachial nucleusipsiPB1
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Lateral nucleus of the trapezoid body caudal partipsiLNTBC-0.5
Medial trapezoid nucleusipsiMTz2
Medial trapezoid nucleus superior partipsiMTzs0
Ventral nucleus of the trapezoid bodyipsiVNTB2
Most dorsal part of the ventral nucleus of the trapezoid bodyipsimDVNTB2
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Paratrigeminal nucleusipsiPa52
Principal sensory trigeminal nucleusipsiPr5-0.5
Principal sensory trigeminal nucleus dorsal partipsiPr5D0
Spinal trigeminal nucleusipsiSp5nc-0.5
Trigeminal subnucleus caudalisipsi5SSC-0.5
Cochlear nucleusipsiCON3
Dorsal cochlear nucleusipsiDC2
Caudal two-thirds of the dorsal cochlear nucleusipsiDCctd4
Dorsal cochlear nucleus fusiform layeripsiDCFu-0.5
Dorsal cochlear nucleus fusiform cellsipsiDCFuc-0.5
Ventral cochlear nucleusipsiVC1
Ventral cochlear nucleus anterior partipsiVCA2
Ventral cochlear nucleus posterior partipsiVCP2
Cochlear root neuronsipsiCORN0
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tractipsiSol3
Raphe nucleiipsiRAN0
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR-0.5
Superior central raphe nucleusipsiCS3
Pontine raphe nucleusipsiPnR-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
B9 serotonin cellsipsiB93
B6 subnucleusipsiB63
B7 cell groupipsiB7CG3
Laterodorsal caudal medulla oblongataipsiLDCMeOb0
Cuneate nucleusipsiCu1
GracileipsiGra1
Dorsal periolivary regionipsiDPO2
Ventral periolivary nucleusipsiVPOA2
Ventromedial periolivary areaipsiVMPOA-0.5
Superior oliveipsiSuOLi3
Lateral superior oliveipsiLSO3
Lateral limb of the lateral superior oliveipsiLLLSO-0.5
Lateral part of the lateral superior oliveipsiLLSO3
Medial limb of the lateral superior oliveipsiLSOmL-0.5
Medial part of the lateral superior oliveipsiMLSO2
Central portion of the lateral superior oliveipsiCLSO-0.5
Dorsal part of the lateral superior oliveipsiDLSO-0.5
Lateral superior olive caudal partipsiLSOc3
Drosolateral lateral superior oliveipsiDLLSO1
Medial superior oliveipsiMSO3
Medial superior olive caudal partipsiMSOc0
Superior paraolivary nucleusipsiSPO3
Rostrocaudal extent of the lateral superior olivary nucleusipsiSOClrc2
Superior paraolivary nucleus ventrolateral partipsiSPOVL-0.5
Superior paraolivary nucleus inferior partipsiSPOi3
Superior paraolivary nucleus caudal partipsiSPOc0
Paragigantocellular reticular nucleusipsiPGi-0.5
Ventral juxtafacial paragigantocellular reticular nucleusipsiVJPGi-0.5
Nonauditory brainstem nucleiipsiNABSN3
Tuberomammillary nucleusipsiTuM-0.5
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR2
Lateral zoneipsiLHA1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area caudal partipsiLHc2.5
Lateral hypothalamic area perifornical partipsiPFx2
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Arcuate nucleusipsiArc2
Premammillary nucleus dorsal partipsiPMD0.5
Parafascicular thalamic nucleusipsiPF-1
Parafascicular thalamic nucleus prerubral partipsiPFPR3
Posterior intralaminar thalamic nucleusipsiPIL2
Lateral subparafascicular thalamic nucleusipsiSPFL-1
Ventral medial nucleus of the thalamusipsiVMT3
Zona incertaipsiZI2
Ventral next to the dorsal cap of the cerebral peduncleipsidcpv3
Lateral lemniscusipsill-0.5
Ventral half of the lateral lemniscusipsillvh-0.5
Dorsal commissure of the lateral lemniscusipsidcll-0.5
RetinaipsiRET0
Central amygdaloid nucleusipsiCe1
Globus pallidusipsiGP3
Caudal globus pallidusipsiGPc2
Medial globus pallidusipsiMGP-3
Dorsal cingulate cortexipsiDCC1
Temporoparietal cortexipsiTPcx-1
Temporal association cortex 1ipsiTeA1
Temporal association cortex 1 layer 3ipsiTeAL30
Temporal association cortex 1 layer 4ipsiTeAL40
Temporal association cortex 1 layer 5ipsiTeAL53
Temporal association cortex 1 layer 6bipsiTeAL6b3
Temporal association cortex 1 layer 1ipsiTeAL10
Temporal association cortex 1 layer 2ipsiTeAL20
Ventral temporal association cortexipsiTev-0.5
Temporal cortex layer 5ipsiTELaL53
Auditory regionsipsiAU3
Auditory regions layer 5ipsiAUL52
Primary auditory cortexipsiAu13
Primary auditory cortex layer 2ipsiAu1L2-0.5
Primary auditory cortex layer 5ipsiAu1L53
Primary auditory cortex layer 5 aipsiAu1L5a1
Primary auditory cortex layer 5 bipsiAu1L5b3
Primary auditory cortex layer 5 b larger pyramidal cellsipsiAu1L5bLpy3
Primary auditory cortex layer 5 medium sized pyramidal cellsipsiAu1L5mspy3
Primary auditory cortex sublayer 3 of layer 5ipsiAu1L5sL33
Primary auditory cortex sublayer 4 of layer 5ipsiAu1L5sL43
Primary auditory cortex layer 5 nonpyramidal cellsipsiAu1L5npy0
Primary auditory cortex layer 5 small sized pyramidal cellsipsiAu1L5sspy0
Primary auditory cortex layer 6ipsiAu1L64
Primary auditory cortex caudoventral partipsiAu1cv-0.5
Insular cortexipsiICX-1
Forelimb motor cortexipsiFMCx0
Caudal forelimb motor areaipsiCFMA0
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx0
Visual regionsipsiVR0
Lateral geniculate complexipsiLG-0.5
Medial geniculate nucleusipsiMG-0.5
Medial geniculate nucleus caudal partipsiMGc-0.5
Dorsomedial part of the medial geniculate nucleus caudal partipsiMGcdm-0.5
Medial geniculate nucleus dorsal partipsiMGD0.5
Medial geniculate nucleus dorsal part rostral partipsiMGDro3
Medial geniculate nucleus medial partipsiMGM2
Medial geniculate nucleus ventral partipsiMGV0.5
Interpeduncular nucleusipsiIP-0.5
Spinal cordipsiMES1
Central cervical nucleus C1ipsiCeCvC11
Lateral spinal nucleus C1ipsiLSpC12
Area X C1ipsiSCL10C11
Dorsal horn C1ipsiDHC11
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Nucleus proprius C1ipsiPDHC11
Spinal cord layer 1 C1ipsiSCL1C11
Ventral horn C1ipsiVHC11
Central cervical nucleus C2ipsiCeCvC21
Lateral spinal nucleus C2ipsiLSpC22
Area X C2ipsiSCL10C21
Dorsal horn C2ipsiDHC21
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Nucleus proprius C2ipsiPDHC21
Spinal cord layer 1 C2ipsiSCL1C21
Ventral horn C2ipsiVHC21
Central cervical nucleus C3ipsiCeCvC31
Lateral spinal nucleus C3ipsiLSpC32
Area X C3ipsiSCL10C31
Dorsal horn C3ipsiDHC31
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Nucleus proprius C3ipsiPDHC31
Spinal cord layer 1 C3ipsiSCL1C31
Ventral horn C3ipsiVHC31
Central cervical nucleus C4ipsiCeCvC41
Lateral spinal nucleus C4ipsiLSpC42
Area X C4ipsiSCL10C41
Dorsal horn C4ipsiDHC41
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Nucleus proprius C4ipsiPDHC41
Spinal cord layer 1 C4ipsiSCL1C41
Ventral horn C4ipsiVHC41
Central cervical nucleus C5ipsiCeCvC51
Lateral spinal nucleus C5ipsiLSpC52
Area X C5ipsiSCL10C51
Dorsal horn C5ipsiDHC51
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Nucleus proprius C5ipsiPDHC51
Spinal cord layer 1 C5ipsiSCL1C51
Ventral horn C5ipsiVHC51
Cervical segment 6ipsiCS60.5
Central cervical nucleus C6ipsiCeCvC61
Lateral spinal nucleus C6ipsiLSpC62
Area X C6ipsiSCL10C61
Dorsal horn C6ipsiDHC61
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Nucleus proprius C6ipsiPDHC61
Spinal cord layer 1 C6ipsiSCL1C61
Ventral horn C6ipsiVHC61
Cervical segment 7ipsiCS70.5
Central cervical nucleus C7ipsiCeCvC71
Lateral spinal nucleus C7ipsiLSpC72
Area X C7ipsiSCL10C71
Dorsal horn C7ipsiDHC71
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Nucleus proprius C7ipsiPDHC71
Spinal cord layer 1 C7ipsiSCL1C71
Ventral horn C7ipsiVHC71
Cervical segment 8ipsiCS80.5
Central cervical nucleus C8ipsiCeCvC81
Lateral spinal nucleus C8ipsiLSpC82
Area X C8ipsiSCL10C81
Dorsal horn C8ipsiDHC81
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Nucleus proprius C8ipsiPDHC81
Spinal cord layer 1 C8ipsiSCL1C81
Ventral horn C8ipsiVHC81
Central cervical nucleus T1ipsiCeCvT11
Lateral spinal nucleus T1ipsiLSpT11
Area X T1ipsiSCL10T11
Dorsal horn T1ipsiDHT11
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Nucleus proprius T1ipsiPDHT11
Spinal cord layer 1 T1ipsiSCL1T11
Ventral horn T1ipsiVHT11
Central cervical nucleus T2ipsiCeCvT21
Lateral spinal nucleus T2ipsiLSpT21
Area X T2ipsiSCL10T21
Dorsal horn T2ipsiDHT21
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Nucleus proprius T2ipsiPDHT21
Spinal cord layer 1 T2ipsiSCL1T21
Ventral horn T2ipsiVHT21
Central cervical nucleus T3ipsiCeCvT31
Lateral spinal nucleus T3ipsiLSpT31
Area X T3ipsiSCL10T31
Dorsal horn T3ipsiDHT31
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Nucleus proprius T3ipsiPDHT31
Spinal cord layer 1 T3ipsiSCL1T31
Ventral horn T3ipsiVHT31
Central cervical nucleus T4ipsiCeCvT41
Lateral spinal nucleus T4ipsiLSpT41
Area X T4ipsiSCL10T41
Dorsal horn T4ipsiDHT41
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Nucleus proprius T4ipsiPDHT41
Spinal cord layer 1 T4ipsiSCL1T41
Ventral horn T4ipsiVHT41
Central cervical nucleus T5ipsiCeCvT51
Lateral spinal nucleus T5ipsiLSpT51
Area X T5ipsiSCL10T51
Dorsal horn T5ipsiDHT51
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Nucleus proprius T5ipsiPDHT51
Spinal cord layer 1 T5ipsiSCL1T51
Ventral horn T5ipsiVHT51
Central cervical nucleus T6ipsiCeCvT61
Lateral spinal nucleus T6ipsiLSpT61
Area X T6ipsiSCL10T61
Dorsal horn T6ipsiDHT61
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Nucleus proprius T6ipsiPDHT61
Spinal cord layer 1 T6ipsiSCL1T61
Ventral horn T6ipsiVHT61
Central cervical nucleus T7ipsiCeCvT71
Lateral spinal nucleus T7ipsiLSpT71
Area X T7ipsiSCL10T71
Dorsal horn T7ipsiDHT71
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Nucleus proprius T7ipsiPDHT71
Spinal cord layer 1 T7ipsiSCL1T71
Ventral horn T7ipsiVHT71
Central cervical nucleus T8ipsiCeCvT81
Lateral spinal nucleus T8ipsiLSpT81
Area X T8ipsiSCL10T81
Dorsal horn T8ipsiDHT81
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Nucleus proprius T8ipsiPDHT81
Spinal cord layer 1 T8ipsiSCL1T81
Ventral horn T8ipsiVHT81
Central cervical nucleus T9ipsiCeCvT91
Lateral spinal nucleus T9ipsiLSpT91
Area X T9ipsiSCL10T91
Dorsal horn T9ipsiDHT91
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Nucleus proprius T9ipsiPDHT91
Spinal cord layer 1 T9ipsiSCL1T91
Ventral horn T9ipsiVHT91
Central cervical nucleus T10ipsiCeCvT101
Lateral spinal nucleus T10ipsiLSpT101
Area X T10ipsiSCL10T101
Dorsal horn T10ipsiDHT101
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Nucleus proprius T10ipsiPDHT101
Spinal cord layer 1 T10ipsiSCL1T101
Ventral horn T10ipsiVHT101
Central cervical nucleus T11ipsiCeCvT111
Lateral spinal nucleus T11ipsiLSpT111
Area X T11ipsiSCL10T111
Dorsal horn T11ipsiDHT111
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Nucleus proprius T11ipsiPDHT111
Spinal cord layer 1 T11ipsiSCL1T111
Ventral horn T11ipsiVHT111
Central cervical nucleus T12ipsiCeCvT121
Lateral spinal nucleus T12ipsiLSpT121
Area X T12ipsiSCL10T121
Dorsal horn T12ipsiDHT121
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Nucleus proprius T12ipsiPDHT121
Spinal cord layer 1 T12ipsiSCL1T121
Ventral horn T12ipsiVHT121
Central cervical nucleus T13ipsiCeCvT131
Lateral spinal nucleus T13ipsiLSpT131
Area X T13ipsiSCL10T131
Dorsal horn T13ipsiDHT131
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Nucleus proprius T13ipsiPDHT131
Spinal cord layer 1 T13ipsiSCL1T131
Ventral horn T13ipsiVHT131
Lateral spinal nucleus L1ipsiLSpL11
Area X L1ipsiSCL10L11
Dorsal horn L1ipsiDHL11
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Nucleus proprius L1ipsiPDHL11
Spinal cord layer 1 L1ipsiSCL1L11
Ventral horn L1ipsiVHL11
Lateral spinal nucleus L2ipsiLSpL21
Area X L2ipsiSCL10L21
Dorsal horn L2ipsiDHL21
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Nucleus proprius L2ipsiPDHL21
Spinal cord layer 1 L2ipsiSCL1L21
Ventral horn L2ipsiVHL21
Lateral spinal nucleus L3ipsiLSpL31
Area X L3ipsiSCL10L31
Dorsal horn L3ipsiDHL31
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Nucleus proprius L3ipsiPDHL31
Spinal cord layer 1 L3ipsiSCL1L31
Ventral horn L3ipsiVHL31
Lateral spinal nucleus L4ipsiLSpL41
Area X L4ipsiSCL10L41
Dorsal horn L4ipsiDHL41
Spinal cord layer 5 L4ipsiSCL5L4-0.5
Nucleus proprius L4ipsiPDHL41
Spinal cord layer 3 L4ipsiSCL3L41
Spinal cord layer 4 L4ipsiSCL4L41
Spinal cord layer 1 L4ipsiSCL1L41
Ventral horn L4ipsiVHL41
Lateral spinal nucleus L5ipsiLSpL51
Area X L5ipsiSCL10L51
Dorsal horn L5ipsiDHL51
Spinal cord layer 5 L5ipsiSCL5L5-0.5
Nucleus proprius L5ipsiPDHL51
Spinal cord layer 1 L5ipsiSCL1L51
Ventral horn L5ipsiVHL51
Lumbar segment 6ipsiL60.5
Lateral spinal nucleus L6ipsiLSpL61
Area X L6ipsiSCL10L61
Dorsal horn L6ipsiDHL61
Spinal cord layer 5 L6ipsiSCL5L6-0.5
Nucleus proprius L6ipsiPDHL61
Spinal cord layer 1 L6ipsiSCL1L61
Ventral horn L6ipsiVHL61
Sacral segment 1ipsiSa10.5
Dorsal horn S1ipsiDHS1-0.5
Spinal cord layer 5 S1ipsiSCL5S1-0.5
Ventral horn S1ipsiVHSa1-0.5
Sacral segment 2ipsiSa20.5
Dorsal horn S2ipsiDHS2-0.5
Spinal cord layer 5 S2ipsiSCL5S2-0.5
Ventral horn S2ipsiVHSa2-0.5
Spinal cord layer 5 S3ipsiSCL5S3-0.5
Spinal cord layer 5 S4ipsiSCL5S4-0.5
Trachea sideipsiOrgsTras4

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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