University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Optic tract right


Abbreviation
opt
Color       
Superior regionsVisual system

SynonymsAbbr.Language
Optic tractoptEng

SubregionsSide
Optic tract dorsal partright
Optic tract ventral partright

Output to

NameSideAbbr.WeightDetails
Optic tractcontraopt-2
Retinal ganglion cellscontraRETg-2
Superior colliculusipsiSC-0.5
Supraoptic nucleus anterior divisionipsiSOA-2
Posterior lobe of pituitaryipsiPPit-0.5
Retinal ganglion cellsipsiRETg-2
Amygdaloid complexipsiAC-1
Central amygdaloid nucleusipsiCe-2
Dorsal geniculate nucleus lateral partipsiDLGl-2
Rostrolateral part of the dorsal geniculate nucleus lateral partipsiDLGlRL-0.5
Rostromedial dorsal geniculate nucleus lateral partipsiDLGlRM-0.5
Dorsal part of the caudal portion of the lateral geniculate nucleusipsiDLGc-0.5
EyecontraOrgEye2
EyeipsiOrgEye2

Input from

NameSideAbbr.WeightDetails
Parabigeminal nucleuscontraPBG-2
Superior colliculus intermediate layerscontraSCi-2
Superior colliculus deep layerscontraSCd-2
Suprachiasmatic nucleuscontraSCh-2
Supraoptic decussationcontrasox-2
Optic tractcontraopt-2
RetinacontraRET3
Temporal crescent of the retinacontraRETtc2
Retina upper temporal quadrantcontraRETutq2
Retinal ganglion cellscontraRETg3
Superior temporal quadrant of the retina type 1 ganglion cellscontraRstqGC12
Superior temporal quadrant of the retina type 2 ganglion cellscontraRstqGC22
Superior temporal quadrant of the retina type 3 ganglion cellscontraRstqGC32
Ventral lateral geniculate nucleuscontraVLG-0.5
Oculomotor nucleusipsi3-2
Superior colliculus superficial layers commissural neuronsipsiSCscn-0.5
Medial preoptic areaipsiMPA-2
HypothalamusipsiHYPO0
Lateral hypothalamic areaipsiLH-2
Preoptic periventricular nucleusipsiPePO-2
Suprachiasmatic nucleusipsiSCh-2
Suprachiasmatic preoptic nucleusipsiPSCh-2
Supraoptic decussationipsisox-2
Subfornical organipsiSFO0
RetinaipsiRET2
Retina nasal partipsiRETna0.5
Temporal crescent of the retinaipsiRETtc2
Retinal ganglion cells of the temporal crescent of the retinaipsiRETgtc3
Retinal ganglion cellsipsiRETg3
Superior part of the retinaipsiRETS-0.5
Superior temporal quadrant of the retina type 1 ganglion cellsipsiRstqGC12
Superior temporal quadrant of the retina type 2 ganglion cellsipsiRstqGC22
Superior temporal quadrant of the retina type 3 ganglion cellsipsiRstqGC32
Retina upper central partipsiRETuc-0.5
Retina inferior partipsiRETi-0.5
Central amygdaloid nucleus lateral divisionipsiCeL-2
Central amygdaloid nucleus medial divisionipsiCeM-2
Caudate putamenipsiCPu0.5
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud3
Rostral striatumipsiCPur1
Ventral striatumipsiCPuv2
Middle-third of the caudate putamenipsiCPuMit2
Primary visual cortexipsiV1-2
Secondary visual cortex medial areaipsiV2M-2
Secondary visual cortex lateral areaipsiV2L-2
Lateral geniculate complexipsiLG-0.5
Intergeniculate leafipsiIGL-2
Accessory olfactory bulbipsiAOB-2
Lateral septal nucleus mediolateral partipsiLSML3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications