University of Rostock

Department of Anatomy

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Rat connectome



Subthalamic nucleus medial cap right


Abbreviation
SThMc
Color       
Superior regionsSubthalamic nucleus medial part

SynonymsAbbr.Language
Subthalamic nucleus medial capSThMcEng

Output to

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN4
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part caudallateral tieripsiSNCCL-0.5
Substantia nigra compact part dorsal tieripsiSNCD-0.5
Medial third of the substantia nigra compact partipsiSNCMt-0.5
Substantia nigra reticular partipsiSNR-0.5
Substantia nigra reticular part caudolateral tieripsiSNRcaL-0.5
Substantia nigra reticular part dorsal tieripsiSNRD-0.5
Substantia nigra reticular part medial one thirdipsiSNRmot-0.5
Retrorubral nucleusipsiRR-0.5
Substantia innominataipsiSI4
Substantia innominata caudal aspectipsiSIc1.5
Substantia innominata rostral aspectipsiSIr-0.5
Substantia innominata dorsolateral part of the rostral aspectipsiSIDLr-0.5
Substantia innominata rostral aspect dorsal partipsiSIrD-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area lateral partipsiLHAL-2
ThalamusipsiT1
Mediodorsal thalamic nucleus medial partipsiMDM1
Paraventricular thalamic nucleusipsiPV1
Perireuniens nucleusipsiPRe1
Ansa peduncularisipsiape-2
Cerebral peduncle basal partipsicp-2
Amygdaloid complexipsiAC1
Central amygdaloid nucleusipsiCe1
Globus pallidusipsiGP4
Caudal globus pallidusipsiGPc4
Caudal globus pallidus ventral partipsiGPcv4
Lateral globus pallidusipsiLGP4
Lateral globus pallidus ventromedial partipsiLGPvm4
Lateral globus pallidus rostral partipsiLGPR4
Medial globus pallidusipsiMGP1.5
Ventral pallidumipsiVP-0.5
Fundus of the striatumipsiFS4
Fundus of the striatum caudal partipsiFSc-0.5
Fundus of the striatum lateral partipsiFSL4

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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