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Rat connectome



Substantia nigra compact part right


Abbreviation
SNC
Color       
Superior regionsSubstantia nigra A9

SynonymsAbbr.Language
Substantia nigra pars compactaSNc 
Substantia nigra pars compacta  
A9 cell groupA9 
Substantia nigra pars compactaSNpcEng
Substantia nigra compact partSNCEng
Substantia nigra compact partSNpcEng
Zona compacta of the substantia nigra Eng

SubregionsSide
Anterior-posterior extent of the substantia nigra compact partright
Substantia nigra compact part anteriorright
Substantia nigra compact part caudal tierright
Substantia nigra compact part caudallateral tierright
Substantia nigra compact part caudomedial partright
Substantia nigra compact part central partright
Substantia nigra compact part dorsal tierright
Substantia nigra compact part lateral tierright
Substantia nigra compact part medial tierright
Substantia nigra compact part mediolateral tierright
Substantia nigra compact part posteriorright
Substantia nigra compact part rostral tierright
Substantia nigra compact part rostrocaudal partright
Substantia nigra compact part rostromedialright
Substantia nigra compact part ventral tierright
Substantia nigra compact part anteroposterior partright
Substantia nigra compact part basal marginright
Substantia nigra compact part upper borderright
Substantia nigra compact part intermedial partright
Substantia nigra compact part dopaminergic cellright
Substantia nigra compact part mid-dorsal sectorright
Substantia nigra compact part caudodorsolateral partright
Substantia nigra compact part middle partright
Substantia nigra compact part ventromedial partright

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscuscontraNLL1
Periaqueductal graycontraPAG1
Lateral periaqueductal graycontraLPAG0.5
Periaqueductal gray medial partcontraPAGm0.5
Ventrolateral periaqueductal graycontraVLPAG1
Red nucleuscontraR-0.5
Superior colliculuscontraSC0
Central tegmental field dorsal partcontraTGACd0
Midbrain extrapyramidal areacontraMEA0.5
Ventrolateral tegmental areacontraVLTg1
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg0.5
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg1
CerebellumcontraCERE-0.5
Paraflocculus ventral partcontraPFlv-0.5
FlocculuscontraFl-0.5
Locus coeruleuscontraLC0.5
Pontine tegmental fieldcontraPTF0
Deep mesencephalic nucleus dorsal partcontraDpMeD1
Pontine reticular nucleus oral partcontraPnO1
Ventrolateral pontine reticular formationcontravlPRF0
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleuscontraLPB0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Medullary reticular nucleus dorsal partcontraMdDd0.5
Parvicellular reticular nucleuscontraPCRt0.5
Mesencephalic trigeminal nucleuscontraMe5-0.5
Dorsal motor nucleus of vaguscontra100
Dorsal raphe nucleus dorsal corecontraDRDc3
Dorsal raphe nucleus lateral wingcontraDRlw1
Median raphe nucleuscontraMnR0
Basal forebraincontraBAF0.5
Posterior region [Lateral division of the hypothalamus]contraPReg1
Lateral hypothalamic areacontraLH-0.5
A8 dopamine cells retrorubral groupcontraRRF0
Centrolateral thalamic nucleuscontraCL-0.5
Parafascicular thalamic nucleuscontraPF-0.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Mediodorsal thalamic nucleus lateral partcontraMDL0
Ventromedial thalamic nucleuscontraVM-0.5
Medial thalamic zonecontraMTZ-0.5
Lateral habenular nucleuscontraLHb-0.5
Lateral habenular nucleus medial partcontraLHbM1
Globus palliduscontraGP3
Lateral globus palliduscontraLGP0
StriatumcontraSTR2
Accumbens nucleus shellcontraAcbSh-0.5
Caudate putamencontraCPu3
Medial striatumcontraCPum0.5
Caudal striatumcontraCPuc0.5
Dorsal striatumcontraCPud1
Rostral striatumcontraCPur0.5
Subthalamic nucleuscontraSTh-0.5
Dentate gyruscontraDG-0.5
Field CA1 of hippocampuscontraCA10
Field CA3 of hippocampuscontraCA30
Anterior cingulate cortexcontraACC1
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL1
NeocortexcontraNEOCX2
Agranular insular cortex rostral partcontraRAIC1
Medial prefrontal cortexcontramPFC0.5
Medial agranular prefrontal cortexcontraAGm1
Visual regionscontraVR0.5
Striatal vesselsipsistriV3
Central grayipsiCG1
Central gray mesencephalic part inferior colliculus levelipsiCGMinf0.5
Central gray mesencephalic part superior colliculus levelipsiCGMsc0.5
Nuclei of the lateral lemniscusipsiNLL1
Paralemniscal nucleusipsiPL-0.5
Nucleus of DarkschewitschipsiDk0
Dorsal terminal nucleus of the accessory optic tractipsiDT0
Periaqueductal grayipsiPAG1
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR1
Inferior colliculusipsiICOL0
Ventral division of the caudal inferior colliculusipsiICOLCV0
Central nucleus of the inferior colliculusipsiCIC0
Rostrocaudal extent of the inferior colliculusipsiRCeICOL0
Superior colliculusipsiSC1
Superior colliculus lateral partipsiSCL1.5
Superior colliculus layersipsiSCLa0
Superior colliculus deep layersipsiSCd-0.5
Tegmental areaipsiTGA0
Central tegmental field dorsal partipsiTGACd1
Central tegmental field ventral partipsiTGACv2
Medial tegmental fieldipsiMTF1
Mesopontine tegmental area caudal partipsiTGAmc1
Mesopontine tegmental area mid-levelipsiTGAmm1
Mesopontine tegmental area rostral partipsiTGAmr1.5
Midbrain extrapyramidal areaipsiMEA1
Peduncularpontine nucleusipsiPPN3
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL-0.5
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA3
Parabrachial pigmented nucleusipsiPBP0
Paranigral nucleusipsiPN0
Retrorubral nucleusipsiRR2
Middle part of the retrorubral fieldipsiRRmi2
Ventrolateral tegmental areaipsiVLTg1
Lateral tegmental nucleusipsiLTN1
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1
Mesencephalic locomotor regionipsiMLR-0.5
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1
Pedunculopontine tegmental nucleus medial partipsiPPTgM2
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1
Pedunculopontine tegmental nucleus rostral partipsiPPTgR2
Interstitial nucleus of CajalipsiInC0
Cerebellar lobule 9ipsiCERL91
Anterior interposed nucleusipsiAIN2
FlocculusipsiFl0
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca2
Locus coeruleus rostral partipsiLCRo2
Pontine grayipsiPG0
Pontine tegmental fieldipsiPTF0
Reticulotegmental nucleus of the ponsipsiRtTg0
Reticular systemipsiRF-0.5
Reticular formation at trigeminal motor nucleusipsiRF50.5
Mesencephalic reticular formationipsiMRF1
Deep mesencephalic nucleus dorsal partipsiDpMeD2
Deep mesencephalic nucleus medial partipsiDpMeM1
Pontine reticular nucleusipsiPRN3
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus oral part central partipsiPnOC-0.5
Ventrolateral pontine reticular formationipsivlPRF0
Pontine reticular nucleus caudal partipsiPNC1
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF1
Cuneiforme nucleus caudal partipsiCnFc-0.5
Parabrachial nucleusipsiPB3
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus medialipsiPBnMe3
Gigantocellular reticular nucleusipsiGi3
Medullary reticular nucleusipsiMdD3
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt1
Parvicellular reticular nucleus alpha partipsiPCRtA-0.5
Mesencephalic trigeminal nucleusipsiMe53
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleusipsiSp5nc0
Paratrochlear nucleusipsiPa41
Superior vestibular nucleusipsiSuVe0
Lateral vestibular nucleusipsiLVe0
Vagosolitary complexipsiVSOL-0.5
Nucleus of the solitary tract medial partipsiSolM-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus dorsal coreipsiDRDc3
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus median partipsiDRM2
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus ventral partipsiDRV2
Median raphe nucleusipsiMnR0
Superior central raphe nucleusipsiCS-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
A2 noradrenergic cellsipsiA2-0.5
Inferior oliveipsiIO0
Retrotrapezoid nucleusipsiRTN0
Basal forebrainipsiBAF3
Diagonal band of BrocaipsiDBB0
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Basal nucleus MeynertipsiB4
Substantia innominataipsiSI1
Substantia innominata dorsal partipsiSID1
Medial preoptic areaipsiMPA0
Magnocellular preoptic nucleusipsiMCPO2
HypothalamusipsiHYPO-0.5
Posterior region [Lateral division of the hypothalamus]ipsiPReg2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anterior partipsiLHAa3
Lateral hypothalamic area posterior partipsiLHAp2
Tuberal region of lateral hypothalamusipsiTuLH3
Medial zoneipsiMHA0
Medial basal hypothalamusipsiMBH-0.5
A8 dopamine cells retrorubral groupipsiRRF1
A8 dopamine cells retrorubral group lateral partipsiRRFL3
A8 dopamine cells retrorubral group medial partipsiRRFm2
Retrochiasmatic areaipsiRCh-0.5
ThalamusipsiT1
Anterior group of the dorsal thalamusipsiATN-0.5
Anteroventral thalamic nucleusipsiAV0
Dorsal part of the lateral geniculate complexipsiLGd-0.5
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC2
Paracentral thalamic nucleus caudal partipsiPC-c1
Paracentral thalamic nucleus rostral partipsiPC-r0
Parafascicular thalamic nucleusipsiPF0.5
Parafascicular thalamic nucleus lateral partipsiPFL4
Parafascicular thalamic nucleus medial partipsiPFM4
Rhomboid thalamic nucleusipsiRh2
Lateral group of the dorsal thalamusipsiLAT-0.5
Posterior thalamic nuclear groupipsiPo2
Medial group of the dorsal thalamusipsiMED2
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD1
Mediodorsal thalamic nucleus central partipsiMDC-10
Mediodorsal thalamic nucleus lateral partipsiMDL-3
Mediodorsal thalamic nucleus laterodorsal partipsiMDLld3
Mediodorsal thalamic nucleus medial partipsiMDM2
Submedius thalamic nucleusipsiSub1
Submedius thalamic nucleus dorsal partipsiSubD2
Midline group of the dorsal thalamusipsiMTN2
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV-0.5
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe1
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm1
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Reuniens thalamic nucleus lateral partipsiReL1
Ventral anterior-lateral complex of the thalamusipsiVAL-0.5
Ventral posterior thalamic nucleus parvicellular partipsiVPPC1
Ventromedial thalamic nucleusipsiVM0.5
Ventromedial thalamic nucleus caudal partipsiVMc2
Intralaminar nucleiipsiILN-0.5
Lateral posterior thalamic nucleusipsiLP1
Medial thalamic zoneipsiMTZ-0.5
Oval paracentral thalamic nucleusipsiOPC3
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus caudal partipsiRtc-10
Reticular thalamic nucleus rostral partipsiRtr-0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI2
Antero-polar part of zona incertaipsiZIAP1
Zona incerta caudal partipsiZIC1
Zona incerta ventral partipsiZIV2
Nucleus of the optic tractipsiOT0
Lateral habenular nucleusipsiLHb1
Lateral habenular nucleus lateral partipsiLHbL-0.5
Lateral habenular nucleus medial partipsiLHbM1
Medio lateral habenular nucleusipsiMLHb1
Medial habenular nucleus dorsal partipsiMHbd0
Medial habenular nucleus lateral partipsiMHbL0
Junction medial and lateral habenulaipsiHABj0
Internal capsuleipsiic-0.5
Lateral portion of the internal capsuleipsiLic2
Medial forebrain bundleipsimfb-2
Accessory optic systemipsiAOS1
Medial terminal nucleus of the accessory optic tractipsiMT0
Amygdaloid complexipsiAC3
Basal magnocellular nucleus rostral poleipsiBmcR-0.5
Basolateral amygdaloid nucleusipsiBL3
Basomedial amygdaloid nucleusipsiBM-0.5
Lateral amygdaloid nucleusipsiLA-0.5
Extended amygdalaipsiEXA2
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA3
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD1.5
Central amygdaloid nucleusipsiCe3
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM-0.5
Sublenticular extended amygdalaipsiSLEA-1
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Medial division of the sublenticular extended amygdalaipsiSLEAm-1
Medial amygdaloid nucleusipsiMe-0.5
Amygdaloid intramedullary grayipsiIMG-0.5
Amygdalostriatal transition areaipsiAStr-0.5
Intercalated massesipsiIM-0.5
ClaustrumipsiCl3
Anterior part of the claustrumipsiACl3
Globus pallidusipsiGP4
Caudal globus pallidusipsiGPc2
Globus pallidus mediodorsal partipsiGPmd3
Lateral globus pallidusipsiLGP3
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP1
Ventral pallidum dorsal partipsiVPd2
Ventral pallidum dorso ventral partipsiVPDV2
Ventral pallidum lateral partipsiVPlp2
Ventral pallidum ventromedial partipsiVPvm0.5
StriatumipsiSTR3
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus shellipsiAcbSh3
Lateral accumbens shellipsiAcbShl1
Medial accumbens shellipsiAcbShm0
Caudate putamenipsiCPu4
Anterior striatumipsiAStri3
Medial striatumipsiCPum4
Caudal striatumipsiCPuc3
Medial part of caudalmost striatumipsiCPumcm1.5
Caudal basal caudate putamenipsiCPuCB0.5
Dorsal striatumipsiCPud4
Dorsal striatum rostrocaudal partipsiCPudrc-0.5
Dorsolateral striatumipsiCPudl3
Mediolateral striatumipsiCPuml-0.5
Orofacial sensorimotor district of the striatumipsiCPuOFS3
Posterior caudate putamenipsiCPup-0.5
Rostral striatumipsiCPur4
Dorsomedial part of rostral striatumipsiCPurDM-0.5
Rostral striatum dorsolateral partipsiCPurDL1
Rostrodorsal striatumipsiCPurd3
Caudate putamen rostrobasal partipsiCPurb1.5
Rostral striatum medial partipsiCPurme3
Striatal matrix compartmentipsiSMC-0.5
Striatal patch compartmentipsiSPC-0.5
Ventral striatumipsiCPuv-0.5
Ventrolateral striatumipsiCPuvl-0.5
Jaw region of the striatumipsiCPuJaw3
Ventral portion of the middle-third of the caudate putamenipsiCPuMitV2
Lateral striatumipsiCPul2
Subventricular zoneipsiSVZ-0.5
Subthalamic nucleusipsiSTh3
Subthalamic nucleus central partipsiSThCe2
Subthalamic nucleus middle partipsiSThm2
Cerebral cortexipsiCEC-0.5
HippocampusipsiHIPP-0.5
Dentate gyrusipsiDG1
Subgranular zoneipsiSGZ-0.5
Field CA1 of hippocampusipsiCA11
Field CA3 of hippocampusipsiCA31
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1 caudal partipsiCg1c0.5
Cingulate cortex area 2 caudal partipsiCg2c0.5
Middle cingulate cortexipsiMCC3
Posterior cingulate cortexipsiPCC2
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL3
NeocortexipsiNEOCX3
Frontal association cortexipsiFrA2
Frontal cortex area 2ipsiFr2-0.5
Frontal cortex area 3ipsiFr3-0.5
Lateral parietal association cortexipsiLPtA2
Temporal cortexipsiTE2
Agranular insular cortexipsiAI-0.5
Agranular insular cortex rostral partipsiRAIC3
Granular insular cortexipsiGI2
Perirhinal cortexipsiA35-1
Perirhinal cortex anterior portionipsiPRha-0.5
Prefrontal cortexipsiPFC3
Lateral agranular prefrontal cortexipsiAGl3
Forelimb motor cortexipsiFMCx3
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm1
Visual regionsipsiVR3
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO1
Neocortex layer 4ipsiNEOCXL40
Neocortex layers 5-6ipsiNEOCXL560
Granular cell layer of the olfactory bulbipsiOBgra-0.5
Olfactory tubercleipsiTuO3
Olfactory tubercle lateral partipsiTuOL1
Olfactory tubercle medial partipsiTuOMP0.5
Septal regionipsiSER3
Caudal septumipsiCSER-0.5
Cervical segment 4ipsiCS43
Spinal cord layer 1 L4ipsiSCL1L4-0.5
Spinal gray matteripsiSGM0
Stellate ganglionipsiAutoSteG0.5
Sciatic nerveipsisci2

Input from

NameSideAbbr.WeightDetails
Central graycontraCG0.5
Periaqueductal graycontraPAG1
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Ventral tegmental area A10contraVTA3
Ventral tegmental area A10 caudal partcontraVTAcp2.5
Ventral tegmental area rostral dorsomedial partcontraVTARdm1
Ventrolateral tegmental areacontraVLTg1
Laterodorsal tegmental nucleuscontraLDTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg0.5
Pedunculopontine tegmental nucleus pars compactacontraPPNC1
CerebellumcontraCERE-0.5
Locus coeruleuscontraLC0.5
Deep mesencephalic nucleuscontraDpMe0
Ventrolateral pontine reticular formationcontravlPRF1
Peribrachial regioncontraPBR0.5
Parabrachial nucleuscontraPB0.5
Medullary reticular nucleus dorsal partcontraMdDd3
Principal sensory trigeminal nucleus ventrolateral partcontraPr5VL2
Lateral preoptic areacontraLPO1
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH3
Posterolateral hypothalamuscontraPLHY-0.5
Posterior hypothalamic nucleus caudal partcontraPHCa0.5
Posterior hypothalamic nucleus rostral partcontraPHRo0.5
Ventromedial hypothalamic nucleuscontraVMH1
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]contraPaPc0.5
Perifornical nucleuscontraPeF0.5
Parafascicular thalamic nucleus lateral partcontraPFL3
Zona incertacontraZI0.5
Central amygdaloid nucleuscontraCe0.5
Globus palliduscontraGP0
Caudate putamencontraCPu-0.5
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs20
Central grayipsiCG3
Periaqueductal grayipsiPAG3
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal grayipsiDLPAG1
Dorsolateral periaqueductal gray caudal partipsiPAGdlc2
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Periaqueductal gray caudal dorsolateral partipsiPAGLDC2
Periaqueductal gray rostrolateral partipsiPAGRL1.5
Periaqueductal gray rostrocaudal extentipsiPAGroe1
Ventrolateral periaqueductal grayipsiVLPAG1
Ventrolateral periaqueductal gray caudal partipsiPAGvlc2
Ventrolateral periaqueductal gray rostral partipsiPAGvlr1
Red nucleusipsiR1
TectumipsiTEC-0.5
Superior colliculusipsiSC0.5
Optic nerve layer of the superior colliculusipsiOp1
Superficial gray layer of the superior colliculusipsiSuG0.5
Intermediate gray layer of the superior colliculusipsiInG2
Intermediate white layer of the superior colliculusipsiInWh3
Superior colliculus deep layersipsiSCd3
Tegmental areaipsiTGA1
Mesopontine tegmental area caudal partipsiTGAmc1.5
Mesopontine tegmental area dorsal partipsiTGAmd2
Mesopontine tegmental area mid-levelipsiTGAmm1.5
Mesopontine tegmental area rostral partipsiTGAmr1.5
Mesopontine tegmental area ventral partipsiTGAmv1.5
Midbrain extrapyramidal areaipsiMEA3
Peduncularpontine nucleusipsiPPN3
Rostromedial tegmental nucleusipsiRMTg3
Substantia nigra compact partipsiSNC3
Substantia nigra compact part caudal tieripsiSNCC2
Substantia nigra compact part caudallateral tieripsiSNCCL2
Substantia nigra compact part lateral tieripsiSNCL2
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Substantia nigra reticular compacta border regionipsiSNRCB2
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part dorsolateral tieripsiSNRDL1
Substantia nigra reticular part lateral tieripsiSNRL0
Substantia nigra reticular part ventromedial tieripsiSNRVM2
Ventral tegmental area A10ipsiVTA4
Ventral tegmental area A10 caudal partipsiVTAcp2.5
Ventral tegmental area A10 caudomedial partipsiVTACM1
Ventral tegmental area A10 caudoventromedialipsiVTACVM1
Ventral tegmental area A10 medial partipsiVTAM2
Ventral tegmental area rostral dorsomedial partipsiVTARdm1
Ventral tegmental tailipsiVTTa3
Parabrachial pigmented nucleus rostral partipsiPBPr1
Parabrachial pigmented nucleus rostrodorsal partipsiPBPrd1
Peripeduncular nucleusipsiPP0
Retrorubral nucleusipsiRR3
Ventrolateral tegmental areaipsiVLTg1
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1.5
Pedunculopontine tegmental nucleus dorsal partipsiPPTgd2
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1.5
Pedunculopontine tegmental nucleus rostral partipsiPPTgR1.5
Pedunculopontine tegmental nucleus ventral partipsiPPTgv1.5
Edinger Westphal nucleusipsiEW2
Central cerbellar nucleiipsiCERcn0
Deep cerebellar nucleiipsiDNC0
Interposed cerebellar nucleiipsiICN1
Lateral cerebellar nucleusipsiCERL1
Medial cerebellar nucleusipsiMed0
Locus coeruleusipsiLC3
Nucleus incertus pars compactaipsiNIc2
Nucleus incertus pars dissipataipsiNId3
Pontomesencephalic grayipsiPoMG-0.5
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe3
Deep mesencephalic nucleus dorsolateral partipsiDpMeDL3
Deep mesencephalic nucleus intermediateipsiDpMei1
Deep mesencephalic nucleus medial partipsiDpMeM1
Pontine reticular nucleus oral partipsiPnO2
Ventrolateral pontine reticular formationipsivlPRF1.5
Pontine reticular nucleus caudal partipsiPNC2
Peribrachial regionipsiPBR3
Cuneiforme nucleusipsiCnF1
Cuneiforme nucleus dorsal partipsiCnFD1
Parabrachial nucleusipsiPB3
Lateral parabrachial nucleusipsiLPB-0.5
Gigantocellular reticular nucleus medial partipsiGiM0
Medullary reticular nucleus dorsal partipsiMdDd2
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca-0.5
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus middle part shell regionipsiDRsh3
Dorsal raphe nucleus middle part ventral regionipsiDRmiV3
Dorsal raphe nucleus rostral partipsiDRr2.5
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR1
Superior central raphe nucleusipsiCS2
Paramedian raphe nucleusipsiPMnR2
Raphe magnus nucleusipsiRMg3
Islands of CallejaipsiICj2
Septal-diagonal band of Broca complexipsiDBBs0
Substantia innominata dorsal partipsiSID-0.5
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Median preoptic areaipsiMnPA0
HypothalamusipsiHYPO-0.5
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area posterior partipsiLHAp-2
Deep layers of the lateral hypothalamic areaipsidLLH1.5
Mediobasal hypothalamusipsiMeHypo0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleus caudal partipsiPHCa2
Posterior hypothalamic nucleus rostral partipsiPHRo1
Ventromedial hypothalamic nucleusipsiVMH2
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc1
Caudal third of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPct0
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo-0.5
Periventricular hypothalamic nucleusipsiPe0
Mammillary bodyipsiCMAM0
Supramammillar nucleusipsiSuM0
A8 dopamine cells retrorubral groupipsiRRF3
A8 dopamine cells retrorubral group caudal partipsiRRFC2
A8 dopamine cells retrorubral group caudomediallateral partipsiRRFCML3
A8 dopamine cells retrorubral group lateral partipsiRRFL2
Perifornical nucleusipsiPeF1
ThalamusipsiT-3
Central medial thalamic nucleusipsiCM-0.5
Parafascicular thalamic nucleusipsiPF3
Parafascicular thalamic nucleus lateral partipsiPFL3
Paraventricular thalamic nucleusipsiPV-0.5
Reuniens thalamic nucleusipsiRe-0.5
Ventromedial thalamic nucleusipsiVM2
Posterior intralaminar thalamic nucleusipsiPIL2
Reticular thalamic nucleusipsiRt2
Zona incertaipsiZI3
Lateral habenular nucleusipsiLHb3
Lateral habenular nucleus lateral partipsiLHbL2
Lateral habenular nucleus medial partipsiLHbM2
Medial habenular nucleusipsiMHb2
Cerebral peduncle basal partipsicp-2
Medial lemniscusipsiml3
Medial terminal nucleus of the accessory optic tractipsiMT-0.5
Amygdaloid complexipsiAC2
Basolateral amygdaloid nucleusipsiBL1.5
Lateral amygdaloid nucleusipsiLA1.5
Bed nucleus of the stria terminalisipsiBST2.5
Bed nucleus of the stria terminalis oval nucleusipsiBSTo0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD3
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV2
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV2
Bed nucleus of the stria terminalis medial division dorsal partipsiBSTMd3
Bed nucleus of the stria terminalis ventral partipsiBNSTv2
Bed nucleus of the stria terminalis far ventral partipsiBNSTfv2
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL3
Central amygdaloid nucleus medial divisionipsiCeM3
Central amygdaloid nucleus medial division rostral partipsiCeMR0.5
Lateral part of the medial division of the central amygdaloid nucleusipsiCeML1.5
Central amygdaloid nucleus medial division medial partipsiCeMM2
Interstitial nucleus of the posterior limb of the anterior commissure lateral partipsiIPACL3
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM-0.5
Sublenticular extended amygdalaipsiSLEA3
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Anterior amygdaloid areaipsiAA3
Medial amygdaloid nucleusipsiMe1.5
ClaustrumipsiCl2
Globus pallidusipsiGP3
Caudal globus pallidusipsiGPc1
Dorsal globus pallidusipsiDGP-0.5
Globus pallidus rostrolateral partipsiGPrL1
Lateral globus pallidusipsiLGP3
Medial globus pallidusipsiMGP2
Subpallidal regionipsiSuPa-0.5
Ventral pallidumipsiVP3
Ventral pallidum lateral partipsiVPlp3
Ventral pallidum medial partipsiVPm1
Ventral pallidum subcommissural partipsiVPsc0
StriatumipsiSTR1
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC3
Dorsal coreipsiAcbCd1
Dorsomedial coreipsiAcbCdm3
Lateral coreipsiAcbCl3
Ventral coreipsiAcbCv3
Accumbens nucleus rostral partipsiAcR2
Accumbens nucleus rostrolateral partipsiAcRL1
Accumbens nucleus caudomedial shellipsiAcbShcm1
Dorsomedial shellipsiAcbShdm3
Lateral accumbens shellipsiAcbShl3
Medial accumbens shellipsiAcbShm3
Ventrolateral shellipsiAcbShvl3
Ventromedial shellipsiAcbShvm1
Ventromedial accumbensipsiAcbVM2
Caudate putamenipsiCPu4
Anterior striatumipsiAStri2.5
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud3
Dorsal striatum patch compartmentipsiCPudStrio-0.5
Dorsally in the medial part of the dorsal striatumipsiCPudmd-0.5
Posterior caudate putamenipsiCPup1
Rostral striatumipsiCPur1
Rostromedial striatumipsiCPurm4
Striatal matrix compartmentipsiSMC0
Striatal patch compartmentipsiSPC3
Ventral striatumipsiCPuv3
Ventral striatum patchipsiCPuvP-0.5
Ventral striatum matrixipsiCPuvM-0.5
Ventralmost tier of caudate putamen extending from the lateral ventricle to external capsule ipsiCPuvmt0
Ventrolateral striatumipsiCPuvl3
Ventromedial striatumipsiCPuvm1
Middle-third of the caudate putamenipsiCPuMit2
Fundus of the striatumipsiFS3
Marginal DivisionipsiMrD3
Subthalamic nucleusipsiSTh4
Parasubthalamic nucleusipsiPSTh4
Subthalamic nucleus dorsal partipsiSThd3
Subthalamic nucleus medial partipsiSThM-2
Subthalamic nucleus middle partipsiSThm1
Subthalamic nucleus medial capipsiSThMc-0.5
Cerebral cortexipsiCEC2.5
Retrosplenial agranular cortexipsiRSA1
Anterior cingulate cortexipsiACC0
Cingulate cortex area 3 vasoregulatory regionipsiCg3vr-0.5
Prelimbic cortexipsiPrL0
Prelimbic cortex deep layersipsiPrLDL2.5
Infralimbic cortexipsiIL0
Frontal association cortexipsiFrA2
Agranular insular cortexipsiAI3
Agranular insular cortex rostral partipsiRAIC2
Dysgranular insular cortexipsiDI3
Granular insular cortexipsiGI2
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs21
Perirhinal cortexipsiA352
Perirhinal cortex anterior portionipsiPRha-0.5
Perirhinal cortex anterior portion layer 3 to layer 5ipsiPRhaL3L51
Perirhinal cortex anterior portion layer 5ipsiPRhaL52.5
Perirhinal cortex anterior portion layer 5 to layer 6ipsiPRhaL5L63
Perirhinal cortex anterior portion layer 6ipsiPRhaL61
Dorsal peduncular cortexipsiDP0
Prefrontal cortexipsiPFC3
Lateral agranular prefrontal cortexipsiAGl0
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm0
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS22
Primary visual cortexipsiV1-0.5
Lateral orbital cortexipsiLO0
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO2
Interpeduncular nucleusipsiIP2
Interpeduncular nucleus lateral subnucleusipsiIPL2
Lateral septal nucleusipsiLS1
TongueipsiOrgOCT-10
Anterior digastricus muscleipsiMuscADig-10
Posterior digastricus muscleipsiMuscPDig-10
Genioglossus muscleipsiMuscGenioG-10
Geniohyoid muscleipsiMuscGenio-10
Musculus masseteripsiMuscMass-10
Temporal muscleipsiMuscT-10
Pterygoid muscleipsiMuscPterygo-10
Mylohyoid muscleipsiMuscMyhy-10
Styloglossus muscle systemipsiMuscStyG-10
Buccinator muscleipsiMuscBucc-10
PlatysmaipsiMuscPla-10
Zygomatic muscleipsiMuscZygo-10
Hyoglossus muscleipsiMuscHyo-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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