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Rat connectome



Substantia nigra reticular part right


Abbreviation
SNR
Color       
Superior regionsSubstantia nigra A9

SynonymsAbbr.Language
Substantia nigra pars diffusa  
Substantia nigra pars reticulataSNr 
Substantia nigra zona reticulata  
Substantia nigra pars reticularis  
Substantia nigra reticular partSNREng
Substantia nigra reticular partSNprEng
Substantia nigra pars reticulataSNPrEng

SubregionsSide
Intermediate part of the substantia nigra reticular partright
Middle half of the substantia nigra reticular partright
Substantia nigra reticular part anterior partright
Substantia nigra reticular part caudal tierright
Substantia nigra reticular part caudalmost partright
Substantia nigra reticular part caudolateral tierright
Substantia nigra reticular part central divisionright
Substantia nigra reticular part dorsal tierright
Substantia nigra reticular part dorsocaudal tierright
Substantia nigra reticular part dorsolateral tierright
Substantia nigra reticular part dorsomedial tierright
Substantia nigra reticular part dorsoventral partright
Substantia nigra reticular part juxtapeduncular portionright
Substantia nigra reticular part lateral tierright
Substantia nigra reticular part medial tierright
Substantia nigra reticular part mediodorsal subdivisonright
Substantia nigra reticular part mediolateral partright
Substantia nigra reticular part rostral tierright
Substantia nigra reticular part rostrocaudal partright
Substantia nigra reticular part rostrolateral subdivisionright
Substantia nigra reticular part rostroventral tierright
Substantia nigra reticular part ventral subdivisionright
Substantia nigra reticular part ventrolateral tierright
Substantia nigra reticular part ventromedial tierright
Substantia nigra reticular part peripeduncular partright
Substantia nigra reticular part basomedial partright
Substantia nigra reticular part posterior partright
Substantia nigra reticular part interneuron GABAright
Substantia nigra reticular part upper halfright
Substantia nigra reticular part caudodorsolateral partright
Substantia nigra reticular part rostromedial part ventral portionright

Output to

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Nuclei of the lateral lemniscuscontraNLL0.5
Ventrolateral periaqueductal graycontraVLPAG1
Superior colliculuscontraSC2
Superior colliculus layerscontraSCLa0
Superior colliculus deep white layercontraSAP1
Superior colliculus intermediate white layercontraSAI1
Superior colliculus intermediate layerscontraSCi1
Intermediate gray layer of the superior colliculuscontraInG3
Intermediate white layer of the superior colliculuscontraInWh0.5
Superior colliculus deep layerscontraSCd-0.5
Deep gray layer of the superior colliculuscontraDpG0.5
Deep white layer of the superior colliculuscontraDpWh0.5
Superior colliculus rostral medial partcontraSCRM0.5
Superior colliculus rostral lateral partcontraSCRL1
Central tegmental field dorsal partcontraTGACd0
Midbrain extrapyramidal areacontraMEA0.5
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg1
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg2
Pedunculopontine tegmental nucleus pars dissipatacontraPPNd0.5
CerebellumcontraCERE-0.5
Locus coeruleuscontraLC0.5
Pontine sublaterodorsal nucleuscontraPsLdn0.5
Pontine tegmental fieldcontraPTF0
Dorsal reticular formationcontraDRF1
Intermediate reticular nucleuscontraIRt1
Deep mesencephalic nucleuscontraDpMe0.5
Deep mesencephalic nucleus dorsal partcontraDpMeD1
Pontine reticular nucleus oral partcontraPnO-0.5
Ventrolateral pontine reticular formationcontravlPRF0
Peribrachial regioncontraPBR-0.5
Lateral parabrachial nucleuscontraLPB0.5
Parvicellular reticular nucleuscontraPCRt1
Facial nucleuscontra72
Facial nucleus dorsolateral subnucleuscontra7DL0
Facial nucleus lateral subnucleuscontra7L1
Facial nucleus medial partcontra7M0
Facial nucleus ventral partcontra7V0
Facial nucleus dorsal intermediate subnucleuscontra7DI0
Mesencephalic trigeminal nucleuscontraMe5-0.5
Mesencephalic trigeminal nucleus rostral partcontraMe5R-0.5
Mesencephalic trigeminal nucleus caudal partcontraMe5Ca-0.5
Principal sensory trigeminal nucleus dorsal partcontraPr5D1
Spinal trigeminal nucleuscontraSp5nc0.5
Spinal trigeminal nucleus caudal part dorsal divisioncontraSp5Cd0.5
Nucleus of the solitary tractcontraSol0.5
Dorsal raphe nucleus dorsal corecontraDRDc3
Dorsal raphe nucleus lateral wingcontraDRlw2
Median raphe nucleuscontraMnR0
Paragigantocellular reticular nucleuscontraPGi-0.5
Basal forebraincontraBAF0
A8 dopamine cells retrorubral groupcontraRRF0
Central medial thalamic nucleuscontraCM-2
Paracentral thalamic nucleuscontraPC0.5
Parafascicular thalamic nucleuscontraPF1
Lateral group of the dorsal thalamuscontraLAT-0.5
Mediodorsal thalamic nucleuscontraMD-0.5
Mediodorsal thalamic nucleus central partcontraMDC1
Mediodorsal thalamic nucleus lateral partcontraMDL1
Mediodorsal thalamic nucleus paralaminar partcontraMDPL-0.5
Submedius thalamic nucleuscontraSub1
Ventrobasal complexcontraVB0
Ventromedial thalamic nucleuscontraVM-0.5
Ventromedial thalamic nucleus dorsal partcontraVMTd-1
Ventral medial nucleus of the thalamuscontraVMT-0.5
Zona incertacontraZI0
StriatumcontraSTR2
Caudate putamencontraCPu2
Medial striatumcontraCPum0.5
Caudal striatumcontraCPuc0.5
Caudal basal caudate putamencontraCPuCB0
Caudate putamen basal partcontraCPuBa0
Caudate putamen basolateral partcontraCPuBL0
Dorsal striatumcontraCPud0
Rostral striatumcontraCPur0
Subthalamic nucleuscontraSTh-0.5
Dentate gyruscontraDG0
Field CA1 of hippocampuscontraCA10
Field CA3 of hippocampuscontraCA30
NeocortexcontraNEOCX2
Central grayipsiCG2
Central gray mesencephalic part inferior colliculus levelipsiCGMinf0.5
Central gray mesencephalic part intercollicular levelipsiCGMint0.5
Central gray mesencephalic part superior colliculus levelipsiCGMsc-1
Nuclei of the lateral lemniscusipsiNLL0.5
Paralemniscal nucleusipsiPL1
Longitudinal fasciclesipsilof-2
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF0.5
Nucleus of DarkschewitschipsiDk2
Oculomotor nucleusipsi32
Dorsal terminal nucleus of the accessory optic tractipsiDT0
Medial accessory oculomotor nucleusipsiMA33
Rostral interstitial nucleus of medial longitudinal fasciculusipsiRI0.5
Periaqueductal grayipsiPAG2
Ventrolateral periaqueductal grayipsiVLPAG3
Ventromedial pontine nucleusipsiVMPn1
Red nucleusipsiR2
Inferior colliculusipsiICOL0
Ventral division of the caudal inferior colliculusipsiICOLCV0
Central nucleus of the inferior colliculusipsiCIC0
Rostrocaudal extent of the inferior colliculusipsiRCeICOL0
Intercollicular nucleusipsiInCo3
Superior colliculusipsiSC3
Superior colliculus caudal partipsicSC3
Superior colliculus lateral partipsiSCL2.5
Superior colliculus deep white layeripsiSAP3
Superior colliculus intermediate white layeripsiSAI3
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus intermediate layersipsiSCi3
Intermediate gray layer of the superior colliculusipsiInG3
Intermediate white layer of the superior colliculusipsiInWh2
Superior colliculus deep layersipsiSCd0.5
Deep gray layer of the superior colliculusipsiDpG0.5
Deep white layer of the superior colliculusipsiDpWh0.5
Superior colliculus mediolateral deep layersipsiSCdmL0.5
Superior colliculus deep layers lateral central partsipsiSCdLc0.5
Superior colliculus medial partipsimSC3
Superior colliculus rostral medial partipsiSCRM1
Superior colliculus rostral lateral partipsiSCRL3
Superior colliculus rostral partipsirSC3
Tegmental areaipsiTGA2
Central tegmental field dorsal partipsiTGACd1
Central tegmental field ventral partipsiTGACv2
Medial tegmental fieldipsiMTF2
Mesopontine tegmental area caudal partipsiTGAmc1
Mesopontine tegmental area mid-levelipsiTGAmm1
Mesopontine tegmental area rostral partipsiTGAmr1.5
Midbrain extrapyramidal areaipsiMEA1
Peduncularpontine nucleusipsiPPN2
Peduncularpontine nucleus peribrachial regionipsiPPNpb1
Subpeduncular tegmental nucleusipsiSPTg3
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC3
Substantia nigra compact part ventral one-halfipsiSNCVo-0.5
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA1
Ventral peribrachial nucleusipsiVPeN1
Parabrachial pigmented nucleusipsiPBP0
Paranigral nucleusipsiPN0
Retrorubral nucleusipsiRR2
Middle part of the retrorubral fieldipsiRRmi2
Ventrolateral tegmental areaipsiVLTg1
Lateral tegmental areaipsiLTGA1
Lateral tegmental nucleusipsiLTN2
Rostral part of the lateral tegmental nucleusipsiLTNr0.5
Laterodorsal tegmental nucleusipsiLDTg1.5
Ventral tegmental nucleusipsiVTg2
Dorsal tegmental nucleusipsiDTg1.5
Mesencephalic locomotor regionipsiMLR-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd2
Pedunculopontine tegmental nucleus rostral partipsiPPTgR1.5
Dorsal midbrainipsiDMEC-0.5
Edinger Westphal nucleusipsiEW2
Interstitial nucleus of CajalipsiInC0
Anterior interposed nucleusipsiAIN2
FlocculusipsiFl0
Interstitial nucleus of the decussation of the superior cerebellar peduncleipsiID0.5
Intermediate interstitial nucleus of the medial longitudinal fasciculusipsiII2
Locus coeruleusipsiLC1
Locus coeruleus caudal partipsiLCca1
Locus coeruleus rostral partipsiLCRo0
Pontine sublaterodorsal nucleusipsiPsLdn1
Pontomesencephalotegmental complexipsiPMTC-0.5
Pontine grayipsiPG0
Pontine tegmental fieldipsiPTF1
Reticulotegmental nucleus of the ponsipsiRtTg1
Pontine nucleiipsiPn-2
Reticular systemipsiRF3
Dorsal reticular formationipsiDRF3
Intermediate reticular nucleusipsiIRt3
Mesencephalic reticular formationipsiMRF2
Deep mesencephalic nucleusipsiDpMe2
Deep mesencephalic nucleus dorsal partipsiDpMeD3
Deep mesencephalic nucleus medial partipsiDpMeM1
Rostral mesencephalic reticular formationipsiRMRf2
Pontine reticular nucleusipsiPRN3
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus oral part central partipsiPnOC1
Ventrolateral pontine reticular formationipsivlPRF0.5
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF2
Cuneiforme nucleus caudal partipsiCnFc1
Parabrachial nucleusipsiPB2
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus central lateral partipsiPBCeL1
Lateral reticular nucleusipsiLRt3
Medullary reticular nucleusipsiMdD-0.5
Medial subnucleus reticularis ventralisipsiMSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd2
Parvicellular reticular nucleusipsiPCRt3
Parvicellular reticular nucleus alpha partipsiPCRtA-0.5
Parvicellular reticular nucleus caudal portionipsipRNc2
Parvicellular reticular nucleus rostral portionipsipRNr3
Facial nucleusipsi71
Facial nucleus dorsolateral subnucleusipsi7DL0
Facial nucleus lateral subnucleusipsi7L0
Facial nucleus medial partipsi7M1
Facial nucleus ventral partipsi7V0
Facial nucleus dorsal intermediate subnucleusipsi7DI0
Intertrigeminal nucleusipsiI52
Supratrigeminal nucleusipsiSu51
Mesencephalic trigeminal nucleusipsiMe50.5
Mesencephalic trigeminal nucleus rostral partipsiMe5R-0.5
Mesencephalic trigeminal nucleus caudal partipsiMe5Ca-0.5
Principal sensory trigeminal nucleus dorsal partipsiPr5D3
Spinal trigeminal nucleusipsiSp5nc1
Spinal trigeminal nucleus caudal part dorsal divisionipsiSp5Cd1
Paratrochlear nucleusipsiPa41
Superior vestibular nucleusipsiSuVe0
Lateral vestibular nucleusipsiLVe0
Nucleus of the solitary tractipsiSol1
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsal partipsiDRD4
Dorsal raphe nucleus dorsal coreipsiDRDc3
Dorsal raphe nucleus lateral wingipsiDRlw3
Dorsal raphe nucleus median partipsiDRM1
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus ventral partipsiDRV2
Dorsal raphe nucleus ventrolateral partipsiDRVL0.5
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS-0.5
Raphe obscurus nucleusipsiROb-0.5
Caudal medulla oblongataipsiCMeOb0.5
Inferior oliveipsiIO0
Paragigantocellular reticular nucleusipsiPGi1
Basal forebrainipsiBAF1
Endopiriform systemipsiEnN-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Basal nucleus MeynertipsiB2
Magnocellular preoptic nucleusipsiMCPO0
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anterior partipsiLHAa0
Lateral hypothalamic area posterior partipsiLHAp1
Tuberal region of lateral hypothalamusipsiTuLH2
Medial zoneipsiMHA0
Ventromedial hypothalamic nucleusipsiVMH-0.5
A8 dopamine cells retrorubral groupipsiRRF1
A8 dopamine cells retrorubral group lateral partipsiRRFL3
A8 dopamine cells retrorubral group medial partipsiRRFm2
ThalamusipsiT2
Caudal thalamusipsiCauT3
Anteromedial thalamic nucleusipsiAM3
Anteroventral thalamic nucleusipsiAV0
Dorsal part of the lateral geniculate complexipsiLGd-0.5
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC3
Paracentral thalamic nucleus caudal partipsiPC-c4
Paracentral thalamic nucleus rostral partipsiPC-r1
Paracentral thalamic nucleus rostrocaudal partipsiPCrc-0.5
Parafascicular thalamic nucleusipsiPF3
Parafascicular thalamic nucleus lateral partipsiPFL4
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh3
Lateral group of the dorsal thalamusipsiLAT-0.5
Posterior thalamic nuclear groupipsiPo1
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD0
Mediodorsal thalamic nucleus central partipsiMDC3
Mediodorsal thalamic nucleus dorsal partipsiMDD1
Mediodorsal thalamic nucleus lateral partipsiMDL4
Mediodorsal thalamic nucleus laterodorsal partipsiMDLld3
Mediodorsal thalamic nucleus medial partipsiMDM3
Caudal part of the mediodorsal thalamic nucleus medial partipsiMDMC-0.5
Mediodorsal thalamic nucleus paralaminar partipsiMDPL-0.5
Mediodorsal thalamic nucleus ventral partipsiMDTV2
Mediodorsal thalamic nucleus paralemellar divisionipsiMDpL-0.5
Submedius thalamic nucleusipsiSub2
Submedius thalamic nucleus dorsal partipsiSubD3
Midline group of the dorsal thalamusipsiMTN1
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe1
Ventral anterior-lateral complex of the thalamusipsiVAL3
Caudodorsal part of ventral anterior-lateral complex of the thalamusipsiCDVAL0
Ventro anterior thalamic nucleusipsiVA-0.5
Ventrolateral thalamic nucleusipsiVL3
Ventrolateral thalamic nucleus lateral mediodorsal partipsiVLLMD1
Ventrolateral thalamic nucleus medial partipsiVLme3
Ventrolateral thalamic nucleus rostromedial partipsiVLRM1
Ventral anterior-lateral complex of the thalamus rostral partipsiVALr-0.5
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventrobasal complexipsiVB3
Ventromedial thalamic nucleusipsiVM3
Ventromedial thalamic nucleus caudal partipsiVMc4
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-0.5
Ventromedial thalamic nucleus rostral partipsiVMR0.5
Ventromedial thalamic nucleus dorsomedial partipsiVMDM0.5
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP-0.5
Laterodorsal thalamic nucleusipsiLD3
Oval paracentral thalamic nucleusipsiOPC4
Posterior groupipsiPTG-0.5
Ventral thalamusipsiVNT3
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus rostral partipsiRtr1
Ventral medial nucleus of the thalamusipsiVMT3
Medial part of tje ventral medial nucleus of the thalamusipsiVMTM4
Medial part of the rostrocaudal extent of the ventral medial nucleus of the thalamusipsiVMTmrc1
Caudal half of the medial part of the rostrocaudal extent of the ventral medial nucleus of the thalamusipsiVMTmrcc3
Zona incertaipsiZI2
Antero-polar part of zona incertaipsiZIAP1
Zona incerta caudal partipsiZIC1
Zona incerta dorsal partipsiZID0.5
Zona incerta ventral partipsiZIV1
Nucleus of the optic tractipsiOT0
Lateral habenular nucleusipsiLHb1
Pretectal regionipsiPRT2
Accessory optic systemipsiAOS1
Lateral terminal nucleus of the accessory optic tractipsiLTeN2
Medial terminal nucleus of the accessory optic tractipsiMT0
Amygdaloid complexipsiAC-0.5
Basal magnocellular nucleus rostral poleipsiBmcR-0.5
Basolateral amygdaloid nucleusipsiBL-0.5
Lateral amygdaloid nucleusipsiLA-0.5
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe0.5
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC0
Sublenticular extended amygdalaipsiSLEA0.5
ClaustrumipsiCl1
Globus pallidusipsiGP3
Globus pallidus anterior portionipsiGPAp2
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP0
Accumbens nucleusipsiAc1
Accumbens nucleus coreipsiAcbC-0.5
Accumbens nucleus shellipsiAcbSh1
Caudate putamenipsiCPu3
Anterior striatumipsiAStri3
Anteromedial striatumipsiCPuam1
Medial striatumipsiCPum2
Caudal striatumipsiCPuc1
Central caudal striatumipsiCPucc1
Ventral region of the caudal striatumipsiCPuVc3
Dorsal striatumipsiCPud1
Dorsolateral striatumipsiCPudl1
Mediodorsal striatumipsiCPuMD2
Posterior caudate putamenipsiCPup-1
Rostral striatumipsiCPur1
Rostral striatum dorsolateral partipsiCPurDL4
Rostrocaudal striatumipsiCPurc2
Rostrodorsal striatumipsiCPurd1
Rostrocaudal region of the caudate putamenipsiRCCPu-0.5
Striatal matrix compartmentipsiSMC-0.5
Ventral striatumipsiCPuv-0.5
Ventrolateral striatumipsiCPuvl1
Lateral striatumipsiCPul1
Subthalamic nucleusipsiSTh2
Cerebral cortexipsiCEC-0.5
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA10
Field CA3 of hippocampusipsiCA30
Entorhinal cortexipsiEnt-0.5
Piriform cortexipsiPir-0.5
MesocortexipsiMESOCX0
Cingulate cortexipsiCg1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
NeocortexipsiNEOCX3
Auditory regionsipsiAU-0.5
Prefrontal cortexipsiPFC1
Motoric regionsipsiM0
Lateral agranular prefrontal cortexipsiAGl1
Forelimb motor cortexipsiFMCx1
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm1
Anterior medial frontal cortexipsiAMFC-0.5
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO1
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC-0.5
Olfactory tubercleipsiTuO1
Septal regionipsiSER1
Spinal cordipsiMES0
Stellate ganglionipsiAutoSteG3

Input from

NameSideAbbr.WeightDetails
Central graycontraCG0.5
Periaqueductal graycontraPAG0.5
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0.5
Ventrolateral periaqueductal gray caudal partcontraPAGvlc2
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Peduncularpontine nucleuscontraPPN-0.5
Ventral tegmental area A10contraVTA2
Laterodorsal tegmental nucleuscontraLDTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg0.5
Ventrolateral pontine reticular formationcontravlPRF0
Peribrachial regioncontraPBR-0.5
Parabrachial nucleuscontraPB-0.5
Medullary reticular nucleus dorsal partcontraMdDd1
Principal sensory trigeminal nucleus ventrolateral partcontraPr5VL0
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH3
Lateral hypothalamic area posterior partcontraLHAp-1
Posterolateral hypothalamuscontraPLHY-0.5
Posterior hypothalamic nucleus caudal partcontraPHCa0
Posterior hypothalamic nucleus rostral partcontraPHRo0
Parafascicular thalamic nucleus lateral partcontraPFL2
Globus palliduscontraGP0
Medial globus palliduscontraMGP2
Caudate putamencontraCPu-0.5
Subthalamic nucleuscontraSTh1
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs20
Central grayipsiCG3
Periaqueductal grayipsiPAG2
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0.5
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0.5
Periaqueductal gray dorsal partipsiPAGd-0.5
Ventrolateral periaqueductal grayipsiVLPAG0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc2
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0.5
TectumipsiTEC-0.5
Intermediate gray layer of the superior colliculusipsiInG-0.5
Superior colliculus deep layersipsiSCd2
Mesopontine tegmental area caudal partipsiTGAmc1
Mesopontine tegmental area dorsal partipsiTGAmd2
Mesopontine tegmental area mid-levelipsiTGAmm1.5
Mesopontine tegmental area rostral partipsiTGAmr1.5
Mesopontine tegmental area ventral partipsiTGAmv1
Midbrain extrapyramidal areaipsiMEA3
Peduncularpontine nucleusipsiPPN-0.5
Rostromedial tegmental nucleusipsiRMTg2
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA3
Retrorubral nucleusipsiRR3
Laterodorsal tegmental nucleusipsiLDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1
Pedunculopontine tegmental nucleus dorsal partipsiPPTgd1.5
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1.5
Pedunculopontine tegmental nucleus rostral partipsiPPTgR1.5
Pedunculopontine tegmental nucleus ventral partipsiPPTgv1
Pedunculopontine tegmental nucleus type 1 neuronsipsiPPTgt1n-0.5
Pedunculopontine tegmental nucleus type 2 neuronsipsiPPTgt2n-0.5
Dorsal midbrainipsiDMEC-0.5
Edinger Westphal nucleusipsiEW2
Central cerbellar nucleiipsiCERcn0
Deep cerebellar nucleiipsiDNC0
Interposed cerebellar nucleiipsiICN1
Lateral cerebellar nucleusipsiCERL1
Medial cerebellar nucleusipsiMed0
Nucleus incertus pars compactaipsiNIc0
Deep mesencephalic nucleusipsiDpMe2
Deep mesencephalic nucleus lateral partipsiDpMeL1
Parvicellular nucleus of the pontomedullary reticular formationipsiMPRFp-0.5
Pontine reticular nucleus oral partipsiPnO1
Ventrolateral pontine reticular formationipsivlPRF0.5
Pontine reticular nucleus caudal partipsiPNC1
Peribrachial regionipsiPBR-0.5
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB3
Gigantocellular reticular nucleus medial partipsiGiM0
Medullary reticular nucleus dorsal partipsiMdDd1
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Nucleus of the solitary tractipsiSol0
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR2
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR-0.5
Superior central raphe nucleusipsiCS1.5
Basal forebrainipsiBAF-1
Septal-diagonal band of Broca complexipsiDBBs0
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO0
Medial preoptic areaipsiMPA0
Median preoptic areaipsiMnPA0
HypothalamusipsiHYPO-0.5
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx1
Mediobasal hypothalamusipsiMeHypo0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA0
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Ventromedial hypothalamic nucleusipsiVMH2
Caudal third of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPct0
Paraventricular hypothalamic nucleusipsiPa-0.5
Periventricular hypothalamic nucleusipsiPe0
Mammillary bodyipsiCMAM0
Supramammillar nucleusipsiSuM0
A8 dopamine cells retrorubral groupipsiRRF0
Perifornical nucleusipsiPeF2
ThalamusipsiT-0.5
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus lateral partipsiPFL2
Ventromedial thalamic nucleusipsiVM2
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt1
Posterior intralaminar thalamic nucleusipsiPIL2
Reticular thalamic nucleusipsiRt2
Zona incertaipsiZI3
Zona incerta dorsal partipsiZID4
Rostrocaudal part of the dorsal zona incertaipsiZIrcD4
Lateral habenular nucleusipsiLHb-0.5
Medial habenular nucleusipsiMHb0
Cerebral peduncle basal partipsicp-2
Medial lemniscusipsiml-2
Bed nucleus of the stria terminalisipsiBST2.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD0
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV0
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV0
Bed nucleus of the stria terminalis medial division dorsal partipsiBSTMd0
Central amygdaloid nucleusipsiCe2.5
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM2
Central amygdaloid nucleus medial division rostral partipsiCeMR2
Interstitial nucleus of the posterior limb of the anterior commissure lateral partipsiIPACL3
Sublenticular extended amygdalaipsiSLEA2
Anterior amygdaloid areaipsiAA2
Medial amygdaloid nucleusipsiMe0
ClaustrumipsiCl1
Rostral part of claustrumipsiRCl1
Globus pallidusipsiGP3
Caudal globus pallidusipsiGPc0.5
Dorsal globus pallidusipsiDGP3
Lateral globus pallidusipsiLGP3
Medial globus pallidusipsiMGP2
Rostral globus pallidusipsiGPr-3
Subpallidal regionipsiSuPa-0.5
Ventral pallidumipsiVP2
Ventral pallidum lateral partipsiVPlp3
Ventral pallidum subcommissural partipsiVPsc0
StriatumipsiSTR3
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC3
Dorsal coreipsiAcbCd3
Dorsomedial coreipsiAcbCdm3
Lateral coreipsiAcbCl1
Ventral coreipsiAcbCv2
Accumbens nucleus rostral partipsiAcR1
Accumbens nucleus shellipsiAcbSh1
Dorsomedial shellipsiAcbShdm2
Lateral accumbens shellipsiAcbShl1
Medial accumbens shellipsiAcbShm0
Ventromedial shellipsiAcbShvm1
Ventromedial accumbensipsiAcbVM0
Caudate putamenipsiCPu4
Anterior striatumipsiAStri2.5
Medial striatumipsiCPum2
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud3
Dorsal striatum matrix compartmentipsiCPudMat-0.5
Dorsolateral striatumipsiCPudl3
Mediodorsal striatumipsiCPuMD-0.5
Mediodorsal striatum patchesipsiCPuMDp-0.5
Mediodorsal striatum matrixipsiCPuMDM-0.5
Posterior caudate putamenipsiCPup1
Rostral striatumipsiCPur1
Striatal matrix compartmentipsiSMC3
Striatal patch compartmentipsiSPC3
Ventral striatumipsiCPuv3
Ventralmost tier of caudate putamen extending from the lateral ventricle to external capsule ipsiCPuvmt0
Ventrolateral striatumipsiCPuvl3
Jaw region of the striatumipsiCPuJaw3
Middle-third of the caudate putamenipsiCPuMit2
Middle caudate putamen dorsoventrallyipsiCPuMidv-0.5
Marginal DivisionipsiMrD3
Subthalamic nucleusipsiSTh4
Parasubthalamic nucleusipsiPSTh4
Subthalamic nucleus caudomedial partipsiSThCM-0.5
Subthalamic nucleus medial capipsiSThMc-0.5
Cerebral cortexipsiCEC2.5
HippocampusipsiHIPP3
Anterior cingulate cortexipsiACC0
Cingulate cortex area 3 vasoregulatory regionipsiCg3vr-0.5
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL0
NeocortexipsiNEOCX-0.5
Frontal association cortexipsiFrA0
Frontal cortex area 2ipsiFr2-1
Parietal association cortexipsiPtA2
Agranular insular cortexipsiAI2
Agranular insular cortex dorsal partipsiAID-1
Dysgranular insular cortexipsiDI0
Granular insular cortexipsiGI2
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs22
Perirhinal cortexipsiA352
Dorsal peduncular cortexipsiDP0
Prefrontal cortexipsiPFC1
Lateral prefrontal cortexipsilPFC-1
Lateral agranular prefrontal cortexipsiAGl2
Whiskers motor cortexipsiWMCx3
Medial agranular prefrontal cortexipsiAGm2
Medial agranular prefrontal cortex rostral partipsirAGm1
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Lateral orbital cortexipsiLO0
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO0
Interpeduncular nucleusipsiIP1
Lateral septal nucleusipsiLS0
Thoracal segment 6ipsiT60.5
Thoracal segment 7ipsiT70.5
Thoracal segment 8ipsiT80.5
Thoracal segment 9ipsiT90.5
Lumbar segment 6ipsiL60
TongueipsiOrgOCT-10
Anterior digastricus muscleipsiMuscADig-10
Posterior digastricus muscleipsiMuscPDig-10
Genioglossus muscleipsiMuscGenioG-10
Geniohyoid muscleipsiMuscGenio-10
Musculus masseteripsiMuscMass-10
Temporal muscleipsiMuscT-10
Pterygoid muscleipsiMuscPterygo-10
Mylohyoid muscleipsiMuscMyhy-10
Styloglossus muscle systemipsiMuscStyG-10
Buccinator muscleipsiMuscBucc-10
PlatysmaipsiMuscPla-10
Zygomatic muscleipsiMuscZygo-10
Hyoglossus muscleipsiMuscHyo-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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