University of Rostock

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Rat connectome



Retrorubral nucleus right


Abbreviation
RR
Color       
Superior regionsVentral midbrain tegmentum

SynonymsAbbr.Language
Retrorubral area Eng
Midbrain reticular nucleus Eng
Midbrain reticular nucleus retrorubral areaRREng
Retrorubral formation  
Retrorubral nucleusRREng
Retrorubral field Eng
Mesencephalic reticular retrorubral field Eng

SubregionsSide
Retrorubral nucleus dorsal partright
Middle part of the retrorubral fieldright
Retrorubral nucleus lateral partright
Rostral retrorubral nucleusright
Caudal retrorubral nucleusright

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal graycontraLPAG0.5
Periaqueductal gray medial partcontraPAGm0.5
Midbrain extrapyramidal areacontraMEA1
Pedunculopontine tegmental nucleuscontraPPTg1
Pontine tegmental fieldcontraPTF1
Parabrachial nucleuscontraPB1
Lateral reticular nucleuscontraLRt2
Medullary reticular nucleus dorsal partcontraMdDd0.5
Parvicellular reticular nucleuscontraPCRt1
Trapezoid bodycontratz3
Facial nucleuscontra73
Facial nucleus dorsolateral subnucleuscontra7DL0
Facial nucleus lateral subnucleuscontra7L0.5
Facial nucleus medial partcontra7M3
Facial nucleus ventral partcontra7V1
Facial nucleus dorsal intermediate subnucleuscontra7DI0
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi3
Nucleus of the horizontal limb of the diagonal bandcontraHDB1
A8 dopamine cells retrorubral groupcontraRRF3
Zona incertacontraZI1
Caudate putamencontraCPu1
Medial striatumcontraCPum0.5
Caudal striatumcontraCPuc0.5
Rostral striatumcontraCPur0.5
Subthalamic nucleus middle partcontraSThm1
Medial longitudinal fasciculusipsimlf-0.5
Periaqueductal grayipsiPAG2
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Superior colliculusipsiSC-1
Central tegmental field lateral partipsiTGACL3
Midbrain extrapyramidal areaipsiMEA1
Substantia nigra A9ipsiSN2
Substantia nigra compact partipsiSNC3
Substantia nigra reticular partipsiSNR3
Ventral tegmental area A10ipsiVTA3
Pedunculopontine tegmental nucleusipsiPPTg2
Pontine grayipsiPG-1
Pontine tegmental fieldipsiPTF1
Reticulotegmental nucleusipsiRETn2
Parabrachial nucleusipsiPB4
Gigantocellular reticular nucleus alpha partipsiGiA1
Lateral reticular nucleusipsiLRt2
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt2
Facial nucleusipsi70.5
Facial nucleus dorsolateral subnucleusipsi7DL0
Facial nucleus lateral subnucleusipsi7L0
Facial nucleus medial partipsi7M1
Facial nucleus ventral partipsi7V0
Facial nucleus dorsal intermediate subnucleusipsi7DI0
Raphe magnus nucleus caudal partipsiRMgc1
Raphe magnus nucleus rostral partipsiRMgR1
Raphe pallidus nucleusipsiRPa1
Inferior oliveipsiIO-1
Paragigantocellular reticular nucleusipsiPGi1
Endopiriform systemipsiEnN2
Diagonal band of BrocaipsiDBB0
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI2
Medial preoptic areaipsiMPA2
Magnocellular preoptic nucleusipsiMCPO1
Posterior region [Lateral division of the hypothalamus]ipsiPReg-1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Anterior lateral areaipsiALA2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Tuberal division of the lateral hypothalamic areaipsiLHTC-1
Tuberal nucleusipsiTU-1
Anterior hypothalamic areaipsiAHA-1
Posterior hypothalamic areaipsiPHA2
Paraventricular hypothalamic nucleusipsiPa1
A8 dopamine cells retrorubral groupipsiRRF-3
Dorsal part of the lateral geniculate complexipsiLGd-1
Posterior thalamic nuclear groupipsiPo1
Mediodorsal thalamic nucleusipsiMD2.5
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Midline group of the dorsal thalamusipsiMTN-1
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm2
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Ventrolateral thalamic nucleusipsiVL1
Ventrobasal complexipsiVB-1
Intralaminar nucleiipsiILN-1
Ventral thalamusipsiVNT2
Reticular thalamic nucleus caudal partipsiRtc-10
Reticular thalamic nucleus rostral partipsiRtr-10
Zona incertaipsiZI2
Anterior pretectal nucleusipsiAPT1
Medial forebrain bundleipsimfb-2
Medial terminal nucleus of the accessory optic tractipsiMT3
Amygdaloid complexipsiAC3
Basolateral amygdaloid nucleusipsiBL2
Basomedial amygdaloid nucleusipsiBM1
Transition zone of basolateral nucleus and central amygdaloid nucleusipsiBLCe2
Lateral amygdaloid nucleusipsiLA3
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd2
Supracapsular bed nucleus of the stria terminalis lateral partipsiBSTSl1
Bed nucleus of the stria terminalis ventral partipsiBNSTv2.5
Central extended amygdala groupipsiCEXA1
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral division capsular partipsiCeC-1
Central amygdaloid nucleus medial divisionipsiCeM-1
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Sublenticular extended amygdalaipsiSLEA3
Anterior amygdaloid areaipsiAA0.5
Medial amygdaloid nucleusipsiMe3
ClaustrumipsiCl1
Rostral part of claustrumipsiRCl1
Globus pallidusipsiGP2
Dorsal globus pallidusipsiDGP1
Medial globus pallidusipsiMGP2
Medial globus pallidus rostral partipsiMGPr2
Ventral pallidumipsiVP3
Ventral pallidum dorsolateral partipsiVPdl1
Ventral pallidum ventromedial partipsiVPvm1
StriatumipsiSTR-1
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC2
Accumbens nucleus shellipsiAcbSh1
Lateral accumbens shellipsiAcbShl2
Medial accumbens shellipsiAcbShm2
Lateral nucleus accumbensipsiAcl3
Caudate putamenipsiCPu3
Medial striatumipsiCPum2
Caudal striatumipsiCPuc2
Caudal striatum ventrolateral partipsiCPuVL3
Dorsal striatumipsiCPud1
Dorsolateral striatumipsiCPudl-0.5
Rostral striatumipsiCPur0
Striatal matrix compartmentipsiSMC-0.5
Ventral striatumipsiCPuv3
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm2
Lateral striatumipsiCPul3
Subthalamic nucleusipsiSTh2
Subthalamic nucleus middle partipsiSThm2
Cingulate cortexipsiCg1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Lateral agranular prefrontal cortexipsiAGl1
Medial prefrontal cortexipsimPFC1
Olfactory tubercleipsiTuO1
Olfactory tubercle lateral partipsiTuOL2
Olfactory tubercle medial partipsiTuOMP0
Septal regionipsiSER1
Dorsal medial septumipsiDMS2
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus intermediate partipsiLSI2
Ventral medial septumipsiVMSe2
Spinal cord layers C1ipsiSCLC11
Spinal cord layers C2ipsiSCLC21
Spinal cord layers C3ipsiSCLC31
Spinal cord layers C4ipsiSCLC41
Spinal cord layers C5ipsiSCLC51
Spinal cord layers C6ipsiSCLC61
Spinal cord layers C7ipsiSCLC71
Spinal cord layers C8ipsiSCLC81
Spinal cord layers L1ipsiSCLL1-0.5
Spinal cord layers L2ipsiSCLL2-0.5
Pterygopalatine ganglionipsiAutoPpG-0.5
Orbicularis oculi musclecontraMuscOrbOc-0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10 caudal partcontraVTAcp2.5
Ventral tegmental area rostral dorsomedial partcontraVTARdm1
Posterior hypothalamic nucleus caudal partcontraPHCa0.5
Posterior hypothalamic nucleus rostral partcontraPHRo0.5
Bed nucleus of the stria terminalis anterior medial partcontraBSTAM0.5
Central amygdaloid nucleuscontraCe1
Dorsolateral periaqueductal gray caudal partipsiPAGdlc2
Periaqueductal gray rostrolateral partipsiPAGRL1.5
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10 caudal partipsiVTAcp2.5
Ventral tegmental area A10 caudoventromedialipsiVTACVM1
Ventral tegmental area rostral dorsomedial partipsiVTARdm1
Ventral tegmental area rostrodorsolateral partipsiVTARDL2.5
Ventral tegmental area caudodorsomedial partipsiVTACDM1
Parabrachial pigmented nucleus rostrodorsal partipsiPBPrd1
Pedunculopontine tegmental nucleusipsiPPTg1
Central cerbellar nucleiipsiCERcn0
Interposed cerebellar nucleiipsiICN1
Lateral cerebellar nucleusipsiCERL2
Medial cerebellar nucleusipsiMed0
Prelocus coeruleus nucleusipsiPLC-2
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId0.5
Mesencephalic reticular formationipsiMRF1
Parabrachial nucleus medialipsiPBnMe-2
Parabrachial nucleus waist partipsiPBW-2
Subcoeruleus nucleus dorsal partipsiSubCD2
Mesencephalic trigeminal nucleusipsiMe5-2
Caudal nucleus of the solitary tract medial partipsiSolcame1
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR2
A1 noradrenergic cellsipsiA13
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM3
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Posterolateral hypothalamusipsiPLHY-1
Posterior hypothalamic nucleus caudal partipsiPHCa1.5
Posterior hypothalamic nucleus rostral partipsiPHRo1.5
Supramammillar nucleus lateral part lateral subpartipsiSuMLL1
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
Lateral habenular nucleusipsiLHb-0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm3
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM3
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV1
Bed nucleus of the stria terminalis fusiform partipsiFu2
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc3
Bed nucleus of the stria terminalis oval nucleusipsiBSTo3
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-1
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd-0.5
Supracapsular bed nucleus of the stria terminalis lateral partipsiBSTSl-1
Central extended amygdala groupipsiCEXA-1
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL-1
Central amygdaloid nucleus medial divisionipsiCeM-1
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC-1
Sublenticular extended amygdalaipsiSLEA-1
Subpallidal regionipsiSuPa-0.5
Ventral pallidumipsiVP1
Ventral pallidum caudal partipsiVPc2
Accumbens nucleus coreipsiAcbC-1
Dorsal coreipsiAcbCd1
Dorsomedial coreipsiAcbCdm1
Lateral coreipsiAcbCl1
Ventral coreipsiAcbCv1
Accumbens nucleus rostrolateral partipsiAcRL2
Accumbens nucleus shellipsiAcbSh-1
Dorsomedial shellipsiAcbShdm1
Medial accumbens shellipsiAcbShm-0.5
Ventral shellipsiAcbShv-0.5
Ventrolateral shellipsiAcbShvl1
Ventromedial shellipsiAcbShvm1
Ventral striatumipsiCPuv-0.5
Ventromedial striatumipsiCPuvm2
Parasubthalamic nucleusipsiPSTh2
Subthalamic nucleus medial capipsiSThMc-0.5
Prelimbic cortexipsiPrL1
Medial orbital cortexipsiMO0
Ventral orbital cortexipsiVO0
Stomach wallipsiOrgsStomWS-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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