University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Prebrachial segments right


Abbreviation
PSeg
Color       
Superior regionsCervical segments

SynonymsAbbr.Language
Prebrachial segmentsPSegEng
Upper cervical spinal cord Eng

SubregionsSide
Cervical segment 1right
Cervical segment 2right
Cervical segment 3right
Cervical segment 4right

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal graycontraLPAG2
Medullary reticular nucleuscontraMdD2
Medial hypothalamic groupcontraMHYPOg-0.5
ThalamuscontraT0.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Lateral periaqueductal grayipsiLPAG2
Medullary reticular nucleusipsiMdD2
Medial hypothalamic groupipsiMHYPOg-0.5
ThalamusipsiT0.5
Lateral group of the dorsal thalamusipsiLAT-0.5
Oval paracentral thalamic nucleusipsiOPC-0.5

Input from

NameSideAbbr.WeightDetails
Pedunculopontine tegmental nucleuscontraPPTg0.5
Locus coeruleuscontraLC0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Koelliker Fuse nucleuscontraKF1
Medial parabrachial nucleus external partcontraMPBE0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Parvicellular reticular nucleuscontraPCRt0.5
Principal sensory trigeminal nucleus caudal partcontraPr5ca0.5
Marginal part of the caudal spinal trigeminal nucleuscontraSp5MC1
Spinal trigeminal nucleus interpolar part rostralcontraSp5Ir3
Ventrocaudal part of the oral spinal trigeminal nucleuscontraSp5Ovc3
Superior vestibular nucleuscontraSuVe0.5
Lateral vestibular nucleuscontraLVe0.5
Pontine raphe nucleuscontraPnR0.5
Raphe magnus nucleuscontraRMg0.5
Raphe obscurus nucleuscontraROb0.5
Superior colliculusipsiSC-0.5
Intermediate gray layer of the superior colliculusipsiInG3
Intermediate white layer of the superior colliculusipsiInWh1
Deep gray layer of the superior colliculusipsiDpG3
Pedunculopontine tegmental nucleusipsiPPTg0.5
Locus coeruleusipsiLC0.5
Medial reticular formationipsiRFm3
Ventromedial reticular formationipsiVMRF0.5
Mesencephalic reticular formationipsiMRF0.5
Pontine reticular nucleus caudal partipsiPNC0.5
Gigantocellular reticular nucleusipsiGi0.5
Gigantocellular reticular nucleus alpha partipsiGiA0.5
Parvicellular reticular nucleusipsiPCRt0.5
Principal sensory trigeminal nucleus caudal partipsiPr5ca0.5
Principal sensory trigeminal nucleus rostral partipsiPr5ro0.5
Marginal part of the caudal spinal trigeminal nucleusipsiSp5MC2
Spinal trigeminal nucleus interpolar part rostralipsiSp5Ir3
Spinal trigeminal nucleus oral partipsiSp5O1
Ventrocaudal part of the oral spinal trigeminal nucleusipsiSp5Ovc3
Superior vestibular nucleusipsiSuVe0.5
Lateral vestibular nucleusipsiLVe0.5
Pontine raphe nucleusipsiPnR0.5
Raphe magnus nucleusipsiRMg0.5
Raphe obscurus nucleusipsiROb0.5
Raphe pallidus nucleusipsiRPa0.5
Buccal division of the facial nerveipsi7bucfn0
Posterior auricular branch of the facial nerveipsi7fnpa0
Temporal branch of the facial nerveipsi7fnt0
Zygomatic branch of the facial nerveipsi7fnz0
Marginal mandibular branch of the facial nerveipsi7fnmm0
Cervical branch of the facial nerveipsi7fnc0
Stylohyoid and digastric branch of the facial nerveipsi7fnsd0
Infraorbital nerveipsiiobn3
Mandibulary nerveipsi5V3-0.5
PericardiumipsiOrgsPeric-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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