University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Medullary reticular nucleus right


Abbreviation
MdD
Color       
Superior regionsCaudal bulbar reticular formation

SynonymsAbbr.Language
Reticular formation medulla  
Central nucleus of the medulla oblongata  
Reticular formation of the brainstem  
Medullary reticular nucleusMDRNEng
Medullary reticular formationRgcEng
Medullary reticular field Eng
Medulla nucleus Eng
Medullar nucleus Eng
Medullary reticular nucleusMdDEng
Between Sp5C and CpLRt Eng
Nucleus medulla oblongata centralis Eng
Nucleus reticularis oblongatae Eng
Reticular nucleus of the medullaMdEng

SubregionsSide
Caudal bulbar lateral reticular formationright
Caudal medullary reticular formationright
Medial medullary reticular nucleusright
Medial subnucleus reticularis ventralisright
Medullary reticular nucleus dorsal partright
Medullary reticular nucleus dorsolateral partright
Medullary reticular nucleus rostral partright
Medullary reticular nucleus rostromedial partright
Medullary reticular nucleus rostroventral partright
Medullary reticular nucleus ventrolateral partright
Nucleus medullae oblongatae centralisright
Ventral medullary reticular formationright
Ventromedial medullary reticular formationright
Intermediate zone of the medullary reticular formationright
Medullary reticular nucleus dorsomedial partright
Lateral part of the medullary reticular formationright

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscuscontraNLL1
Ventrolateral periaqueductal graycontraVLPAG3
TectumcontraTEC1
Superior colliculuscontraSC1.5
Central gray of the superior colliculuscontracgSC1.5
Superior colliculus medial partcontramSC1.5
Superior colliculus rostral partcontrarSC1.5
Superior colliculus rostrocaudal partcontraSCrc1.5
Central tegmental field dorsal partcontraTGACd2
Laterodorsal tegmental nucleuscontraLDTg2
Ventral tegmental nucleuscontraVTg1
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg2
Paraflocculus ventral partcontraPFlv0.5
Cerebellar lobule 10contraCERL100.5
Cerebellar lobule 10 medial partcontraCERL10Me1
Intermediate part of noduluscontraCERL10im1
FlocculuscontraFl1
A5 noradrenaline cellscontraA5-0.5
Barringtons nucleuscontraBar0.5
Locus coeruleuscontraLC1
Median reticular nucleuscontraRFMED-0.5
Pontine reticular nucleuscontraPRN1
Gigantocellular reticular nucleuscontraGi3
Area postremacontraAP-0.5
Facial nucleuscontra73
Facial nucleus medial partcontra7M1.5
Hypoglossal nucleuscontra12S2
Supratrigeminal nucleuscontraSu52
Motor trigeminal nucleuscontraMo53
Medial vestibular nucleuscontraMVe3
Nucleus of the solitary tract medial partcontraSolM-0.5
Dorsal raphe nucleus lateral wingcontraDRlw0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa3
Caudal ventrolateral medullacontraCVLM1
Rostral ventrolateral medullacontraRVLM1
Inferior olivecontraIO1
Inferior olive dorsal nucleuscontraIOD1
Inferior olive principal nucleuscontraIOPr1
Paragigantocellular reticular nucleus rostral partcontraPGiR-0.5
Juxtafacial paragigantocellular reticular nucleuscontraJPGi2
Caudal ventral medulla oblongatacontraCVMeO-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Anterior group of the dorsal thalamuscontraATN1
Ventromedial thalamic nucleus caudal partcontraVMc-0.5
Ventromedial thalamic nucleus caudal two thirdscontraVMctt-0.5
Ventral thalamuscontraVNT1
Accumbens nucleus corecontraAcbC-10
Accumbens nucleus shellcontraAcbSh-10
Forelimb motor cortexcontraFMCx1
Caudal forelimb motor areacontraCFMA1
Lateral part of the granular cortex of forelimb motor regionscontraLFMCx1
Cervical segmentscontraCSeg-0.5
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Spinal cord layers C2contraSCLC21
Cervical segment 3contraCS31
Spinal cord layers C3contraSCLC31
Phrenic motoneurons of lamina 9 C3contraPh9C31
Cervical segment 4contraCS41
Phrenic motoneurons of lamina 9 C4contraPh9C41
Cervical segment 5contraCS51
Phrenic motoneurons of lamina 9 C5contraPh9C51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Spinal cord layer 4 C7contraSCL4C70.5
Cervical segment 8contraCS81
Spinal cord layers L1contraSCLL1-0.5
Spinal cord layers L2contraSCLL2-0.5
Central gray medial partipsiCGMe-0.5
Medial longitudinal fasciculusipsimlf-0.5
Nuclei of the lateral lemniscusipsiNLL1
Periaqueductal grayipsiPAG3
Ventrolateral periaqueductal grayipsiVLPAG3
Superior colliculusipsiSC1
Central gray of the superior colliculusipsicgSC1
Superior colliculus medial partipsimSC1
Superior colliculus rostral partipsirSC1
Superior colliculus rostrocaudal partipsiSCrc1
Central tegmental field dorsal partipsiTGACd2
Lateral tegmental nucleusipsiLTN3
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg2
Dorsal tegmental nucleusipsiDTg1.5
Dorsal tegmental nucleus central partipsiDTgC1
Pedunculopontine tegmental nucleusipsiPPTg2
Paraflocculus ventral partipsiPFlv1
C1-zoneipsiC1ZO1
C1-forelimb zoneipsiC1FZO1
Simple lobule C1 zoneipsiSimC11
Simple lobule forelimb C1 zoneipsiSimC1f1
Cerebellar lobule 10ipsiCERL101.5
Cerebellar lobule 10 medial partipsiCERL10Me1
Intermediate part of nodulusipsiCERL10im0.5
FlocculusipsiFl1
A5 noradrenaline cellsipsiA53
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC2
Pontine nucleiipsiPn-0.5
Reticular systemipsiRF-1
Intermediate reticular nucleusipsiIRt0.5
Medial reticular formationipsiRFm3
Median reticular nucleusipsiRFMED-0.5
Ventral reticular formationipsiVRF3
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB0.5
Koelliker Fuse nucleusipsiKF-0.5
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus central lateral partipsiPBCeL-0.5
Parabrachial nucleus external divison lateral partipsiPBeDL-0.5
Parabrachial nucleus medialipsiPBnMe-1
Central part of the medial parabrachial nucleusipsiPBnCMe-0.5
Medial parabrachial nucleus external partipsiMPBE-0.5
Parabrachial nucleus ventrolateral partipsiPBveLa-0.5
Ventromedial aspect of the parabrachial nucleusipsiPBvm-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Parvicellular reticular nucleusipsiPCRt-0.5
Subcoeruleus nucleusipsiSubC-0.5
C1 adrenaline cellsipsiC13
Area postremaipsiAP-0.5
Facial nucleusipsi73
Facial nucleus lateral subnucleusipsi7L-0.5
Facial nucleus medial partipsi7M3
Hypoglossal nucleusipsi12S3
Root of hypoglossal nerve lateral partipsi12nL-0.5
Root of hypoglossal nerve medial partipsi12nM-2
Intertrigeminal nucleusipsiI50
Supratrigeminal nucleusipsiSu53
Mesencephalic trigeminal nucleusipsiMe5-0.5
Motor trigeminal nucleusipsiMo53
Motor trigeminal nucleus ventromedial partipsiMo5VM-0.5
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleus caudal partipsiSp5C2
Spinal trigeminal nucleus caudal part dorsal divisionipsiSp5Cd3
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Spinal trigeminal nucleus ventral partipsiSp5ncV1
CochleaipsiCO2
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract medial partipsiSolM-0.5
Dorsal cell columnipsiDCeCo-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleus dorsal partipsiDRD1
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus rostral partipsiDRr1
Dorsal raphe nucleus ventral partipsiDRV1
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medullaipsiCVLM3
Rostral ventrolateral medullaipsiRVLM3
Ventral part of the ventrolateral medulla oblongataipsiMVVL-2
A1 noradrenergic cellsipsiA13
Inferior olive caudal partipsiIOCa-0.5
Inferior olive dorsal nucleusipsiIOD-0.5
Inferior olive medial nucleusipsiIOM-0.5
Inferior olive principal nucleusipsiIOPr-0.5
Inferior olive principal nucleus medial part ventral lamellaipsiIOPrMeVL-0.5
Dorsal border of the reticulo olivary nucleusipsiDRON-0.5
Medial superior oliveipsiMSO-2
Caudal superior olivary complexipsiSuOLiC-2
Paragigantocellular reticular nucleus rostral partipsiPGiR-0.5
Caudal ventral medulla oblongataipsiCVMeO-0.5
Substantia innominataipsiSI0.5
Lateral hypothalamic areaipsiLH1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP1
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP1
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa1
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD1
Paraventricular nucleus lateral parvocellular partipsiPaLp1
Paraventricular nucleus medial partipsiPame1
Anterior hypothalamic area [Regio rostralis]ipsiAHARR0
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL0
Paracentral thalamic nucleus caudal partipsiPC-c1
Paracentral thalamic nucleus rostral partipsiPC-r1
Parafascicular thalamic nucleusipsiPF-0.5
Parafascicular thalamic nucleus lateral partipsiPFL3
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD0
Intermediodorsal thalamic nucleusipsiIMD0
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus medial partipsiPVM1
Paraventricular thalamic nucleus posterior partipsiPVP1
Reuniens thalamic nucleusipsiRe-0.5
Ventral posterior thalamic complexipsiVPT0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC1
Ventromedial thalamic nucleusipsiVM-0.5
Ventromedial thalamic nucleus caudal partipsiVMc3
Intralaminar nucleiipsiILN1
Oval paracentral thalamic nucleusipsiOPC3
Ventral medial nucleus of the thalamusipsiVMT-0.5
Medial forebrain bundleipsimfb-2
Pyramideipsipyra-0.5
Reticulospinal tractipsirespt-2
Central amygdaloid nucleusipsiCe0.5
Accumbens nucleus coreipsiAcbC-10
Accumbens nucleus shellipsiAcbSh-10
Caudate putamenipsiCPu-2
Agranular insular cortex rostral partipsiRAIC-0.5
Forelimb motor cortexipsiFMCx1
Caudal forelimb motor areaipsiCFMA1
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx1
Interpeduncular nucleusipsiIP1
Intermediolateral cell columnipsiIML3
Cardioacceleratory sympathetic preganglionic neurons in the intermediolateral nucleusipsiIMLcas2
Ventrolateral funiculusipsivLF0.5
Cervical segmentsipsiCSeg1
Cervical segment 1ipsiCS11
Intermediomedial cell column C1ipsiIMMC1-0.5
Dorsal horn C1ipsiDHC1-0.5
Cervical segment 2ipsiCS21
Spinal cord layers C2ipsiSCLC22
Dorsal horn C2ipsiDHC2-0.5
Cervical segment 3ipsiCS31
Spinal cord layers C3ipsiSCLC32
Phrenic motoneurons of lamina 9 C3ipsiPh9C33
Cervical segment 4ipsiCS41
Phrenic motoneurons of lamina 9 C4ipsiPh9C43
Cervical segment 5ipsiCS51
Phrenic motoneurons of lamina 9 C5ipsiPh9C53
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segmentsipsiTSeg-0.5
Mid thoracal segmentsipsiTSegM-0.5
Lumbar segmentsipsiLSeg-0.5
Lumbar segment 1ipsiL13
Spinal cord layers L1ipsiSCLL1-0.5
Lumbar segment 2ipsiL23
Spinal cord layers L2ipsiSCLL2-0.5
Lumbar segment 3ipsiL33
Lumbar segment 4ipsiL43
Lumbar segment 5ipsiL53
Area X L5ipsiSCL10L51
Lumbar segment 6ipsiL63
Sacral segmentsipsiSSeg-0.5
Pterygopalatine ganglionipsiAutoPpG-10
Pterygoid nerveipsipterygo-2
Cervical oesophagusipsiOrgsOesC-0.5
StomachipsiOrgsStomS-10
ColonipsiOrgsColonS-10
Liver sideipsiOrgsLivs0.5
Adrenal medullaipsiOrgsAM-10
Musculus retractor bulbiipsiMuscRetB-0.5
Tibialis anterior muscleipsiMuscTA-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Soleus muscleipsiMuscSo-0.5
Lumbar epaxial musclesipsiMuscLep-0.5
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10
Tail muscleipsiMuscTail-10
ClitorisipsiOrgCLi-10
Uterus bodyipsiOrgUTB-10
Corpus cavernosumipsiOrgCC-10
ProstateipsiOrgProst-10
KidneyipsiOrgsKid-10
UrethraipsiUrethra-10
Urinary bladderipsiOrgUrBLa-10
SpleenipsiOrgSPL-10
Pancreas sideipsiOrgsPancs-10
LungipsiOrgsLung-10
Trachea sideipsiOrgsTras-10

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG3
Dorsal periaqueductal graycontraDPAG1
Dorsolateral periaqueductal graycontraDLPAG1
Lateral periaqueductal graycontraLPAG3
Caudal part of the medial periaqueductal graycontraPAGmc1
Ventral periaqueductal graycontraVPAG0.5
Ventrolateral periaqueductal graycontraVLPAG1
Substantia nigra A9contraSN-0.5
Ventral tegmental area A10contraVTA-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Laterodorsal tegmental nucleus alphacontraLDTga-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Pedunculopontine tegmental nucleus lateral partcontraPPTgL-0.5
Pedunculopontine tegmental nucleus medial partcontraPPTgM-0.5
Dorsolateral humpcontraCERcndl0
Anterior interposed nucleuscontraAIN0
Posterior interposed nucleuscontraCERpin1
Lateral cerebellar nucleuscontraCERL0
Medial cerebellar nucleuscontraMed1
A5 noradrenaline cellscontraA5-0.5
Reticular systemcontraRF-0.5
Pontine reticular nucleuscontraPRN1
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Gigantocellular reticular nucleus ventral partcontraGiV0.5
Parvicellular reticular nucleuscontraPCRt2
Facial nucleuscontra71.5
Hypoglossal nucleuscontra12S1.5
Supratrigeminal nucleuscontraSu52
Motor trigeminal nucleuscontraMo5-2
Trigeminal subnucleus caudaliscontra5SSC-0.5
Vestibular nucleicontraVnc2
Nucleus of the solitary tract rostral partcontraSolro2
Dorsal raphe nucleuscontraDR1
Median raphe nucleuscontraMnR-0.5
Raphe magnus nucleuscontraRMg-0.5
Lateral paragigantocellular nucleuscontraLPGi0.5
Lateral hypothalamic area [Lateral zone mammillary level]contraLHLZM0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Subparafascicular thalamic nucleus parvicellular partcontraSPFp1
Gustatory dysgranular insular cortexcontraDIg2
Forelimb motor cortexcontraFMCx1
Caudal forelimb motor areacontraCFMA1
Lateral part of the granular cortex of forelimb motor regionscontraLFMCx1
Whisker motor cortex A1contraWMCxA13
Primary somatosensory cortexcontraS12
Lateral cervical nucleuscontraLatC0.5
Prebrachial segmentscontraPSeg2
Dorsal root ganglion C2contraDRGC21
Dorsal root ganglion C3contraDRGC31
Dorsal root ganglion C4contraDRGC41
Dorsal root ganglion C5contraDRGC51
Cervical enlargementcontraCSegE0.5
Cervical spinal cord layer 5 lateral borders of the reticulated partcontraCSegL5rL-0.5
Cervical spinal cord between layers 7 and 10contraCSegL7b10-0.5
Cervical spinal cord between layers 7 and 8contraCSegL7b8-0.5
Lumbar segmentscontraLSeg-0.5
Lumbar enlargementcontraLSegE0.5
Lumbar enlargement between layers 7 and 10contraLSegE7b10-0.5
Lumbar enlargement between layers 7 and 8contraLSegE7b8-0.5
Lateral spinal nucleus L1contraLSpL1-0.5
Area X L1contraSCL10L13
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 6 L1contraSCL6L1-0.5
Spinal cord layer 4 L1contraSCL4L1-0.5
Spinal cord layer 1 L1contraSCL1L1-0.5
Spinal cord layer 7 L1contraSCL7L13
Spinal cord layer 8 L1contraSCL8L1-0.5
Lateral spinal nucleus L2contraLSpL2-0.5
Area X L2contraSCL10L23
Spinal cord layer 5 L2contraSCL5L2-0.5
Spinal cord layer 6 L2contraSCL6L2-0.5
Spinal cord layer 4 L2contraSCL4L2-0.5
Spinal cord layer 1 L2contraSCL1L2-0.5
Spinal cord layer 7 L2contraSCL7L23
Spinal cord layer 8 L2contraSCL8L2-0.5
Lateral spinal nucleus L3contraLSpL3-0.5
Area X L3contraSCL10L33
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 6 L3contraSCL6L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 7 L3contraSCL7L33
Spinal cord layer 8 L3contraSCL8L3-0.5
Lateral spinal nucleus L4contraLSpL4-0.5
Area X L4contraSCL10L43
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 6 L4contraSCL6L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 7 L4contraSCL7L43
Spinal cord layer 8 L4contraSCL8L4-0.5
Lateral spinal nucleus L5contraLSpL5-0.5
Area X L5contraSCL10L53
Spinal cord layer 5 L5contraSCL5L5-0.5
Spinal cord layer 6 L5contraSCL6L5-0.5
Spinal cord layer 4 L5contraSCL4L5-0.5
Spinal cord layer 1 L5contraSCL1L5-0.5
Spinal cord layer 7 L5contraSCL7L53
Spinal cord layer 8 L5contraSCL8L5-0.5
Lateral spinal nucleus L6contraLSpL6-0.5
Area X L6contraSCL10L63
Spinal cord layer 5 L6contraSCL5L6-0.5
Spinal cord layer 6 L6contraSCL6L6-0.5
Spinal cord layer 4 L6contraSCL4L6-0.5
Spinal cord layer 1 L6contraSCL1L6-0.5
Spinal cord layer 7 L6contraSCL7L63
Spinal cord layer 8 L6contraSCL8L6-0.5
Intermediate zone of lumbar segmentscontraLSegiZ-0.5
Periaqueductal grayipsiPAG3
Dorsal periaqueductal grayipsiDPAG3
Dorsolateral periaqueductal grayipsiDLPAG3
Lateral periaqueductal grayipsiLPAG3
Caudal part of the medial periaqueductal grayipsiPAGmc3
Ventral periaqueductal grayipsiVPAG1
Ventrolateral periaqueductal grayipsiVLPAG3
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR-0.5
Substantia nigra reticular part lateral tieripsiSNRL-0.5
Ventral tegmental area A10ipsiVTA1.5
Peripeduncular nucleusipsiPP3
Lateral tegmental nucleusipsiLTN-2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Laterodorsal tegmental nucleus alphaipsiLDTga-0.5
Ventralmost portion of the laterodorsal tegmental nucleusipsiLDTgvm1
Lateral compact portion of the laterodorsal tegmental nucleusipsiLDTgLc3
Pars principalis of the laterodorsal tegmental nucleusipsiLDTgpp-2
Dorsal tegmental nucleus central partipsiDTgC3
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Pedunculopontine tegmental nucleus lateral partipsiPPTgL-0.5
Pedunculopontine tegmental nucleus medial partipsiPPTgM-0.5
Dorsolateral humpipsiCERcndl2
Anterior interposed nucleusipsiAIN1
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL-0.5
Medial cerebellar nucleusipsiMed2
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC1
Locus coeruleus alphaipsiLCalp-2
Locus coeruleus pars principalisipsiLCpp-2
Pons caudal partipsiPca-2
Pontine periventricular grayipsiPPG3
Reticular systemipsiRF-0.5
Intermediate reticular nucleusipsiIRt1
Deep mesencephalic nucleus medial partipsiDpMeM3
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC3
Parabrachial nucleusipsiPB-1
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleus external partipsiLPBE1
Lateral edge of the central lateral parabrachial nucleusipsiPBCeLe3
Medial part of the central lateral parabrachial nucleusipsiPBCeLM3
Rostral edge at the dorsal lateral parabrachial nucleusipsiPBDoLRe3
Parabrachial nucleus external divison lateral partipsiPBeDL3
Parabrachial nucleus medialipsiPBnMe1
Medial parabrachial nucleus external partipsiMPBE3
Parabrachial nucleus ventrolateral partipsiPBveLa3
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus lateral partipsiGirL-2
Medial medullary reticular nucleusipsiMMdD-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Parvicellular reticular nucleusipsiPCRt2
Parvicellular reticular nucleus caudal portionipsipRNc-0.5
Medial rostral parvicellular reticular nucleusipsipRNrM-0.5
Area postremaipsiAP-2
Facial nucleusipsi73
Hypoglossal nucleusipsi12S3
Paratrigeminal nucleusipsiPa5-0.5
Supratrigeminal nucleusipsiSu53
Mesencephalic trigeminal nucleusipsiMe5-1
Motor trigeminal nucleusipsiMo5-2
Principal sensory trigeminal nucleus dorsal partipsiPr5D3
Spinal trigeminal nucleusipsiSp5nc0
Spinal trigeminal nucleus caudal partipsiSp5C3
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Trigeminal subnucleus caudalisipsi5SSC-0.5
Vestibular nucleiipsiVnc3
Nucleus of the solitary tractipsiSol1
Caudal nucleus of the solitary tract medial partipsiSolcame2
Nucleus of the solitary tract central partipsiSolCe-2
Rostral central part of the nucleus of the solitary tractipsiSolRCe1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract medial partipsiSolM1
Nucleus of the solitary tract rostral partipsiSolro2
Medial part of rostral portion of the nucleus of the solitary tractipsiSolroM1
Ventral part of the rostral nucleus of the solitary tractipsiSolroV2
Rostral central subdivsion of the rostral nucleus of the solitary tractipsiSolroRC1.5
Rostral lateral subdivision of the rostral nucleus of the solitary tractipsiSolroRL1.5
Nucleus of the solitary tract rostrolateral partipsiSolRL1
Nucleus of the solitary tract rostrocentralipsiSolroc1
Dorsal motor nucleus of vagusipsi10-2
Dorsal motor nucleus of vagus dorsolateral edgeipsi10DLe0
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR-0.5
Medial raphe nucleusipsiMeR-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
A1 noradrenergic cellsipsiA1-0.5
Lateral paragigantocellular nucleusipsiLPGi1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Substantia innominataipsiSI1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic area dorsal partipsiPHD-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0.5
Parafascicular thalamic nucleusipsiPF-0.5
Subparafascicular thalamic nucleus parvicellular partipsiSPFp2
Zona incertaipsiZI-0.5
Zona incerta dorsal partipsiZID-0.5
Zona incerta ventral partipsiZIV-0.5
Dorsolateral funiculusipsidlft3
Bed nucleus of the stria terminalisipsiBST1.5
Bed nucleus of the stria terminalis caudal partipsiBSTCa2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD1
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV1
Bed nucleus of the stria terminalis rostral partipsiBSTro0.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM1
Anterior amygdaloid areaipsiAA3
Anterior cingulate cortexipsiACC1
Gustatory dysgranular insular cortexipsiDIg1
Forelimb motor cortexipsiFMCx1
Caudal forelimb motor areaipsiCFMA1
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx1
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL52
Whisker motor cortex A1ipsiWMCxA13
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL52
Precommissural nucleusipsiPrC-0.5
Ventral lateral geniculate nucleusipsiVLG2
Spinal cordipsiMES1
Lateral cervical nucleusipsiLatC0.5
Prebrachial segmentsipsiPSeg2
Spinal cord layer 5 lateral part C1ipsiSCL5lpC1-0.5
Cervical segment 2ipsiCS2-0.5
Dorsal root ganglion C2ipsiDRGC21
Area X C2ipsiSCL10C2-0.5
Spinal cord layer 5 lateral part C2ipsiSCL5lpC2-0.5
Spinal cord layer 7 C2ipsiSCL7C2-0.5
Spinal cord layer 8 C2ipsiSCL8C2-0.5
Cervical segment 3ipsiCS3-0.5
Dorsal root ganglion C3ipsiDRGC31
Area X C3ipsiSCL10C3-0.5
Spinal cord layer 5 lateral part C3ipsiSCL5lpC3-0.5
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Spinal cord layer 8 C3ipsiSCL8C3-0.5
Cervical segment 4ipsiCS4-0.5
Dorsal root ganglion C4ipsiDRGC41
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 lateral part C4ipsiSCL5lpC4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Cervical segment 5ipsiCS5-0.5
Dorsal root ganglion C5ipsiDRGC51
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 lateral part C5ipsiSCL5lpC5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Cervical segment 6ipsiCS6-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 lateral part C6ipsiSCL5lpC6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Cervical segment 7ipsiCS7-0.5
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 lateral part C7ipsiSCL5lpC7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 8 C7ipsiSCL8C7-0.5
Cervical segment 8ipsiCS8-0.5
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 lateral part C8ipsiSCL5lpC8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layer 8 C8ipsiSCL8C8-0.5
Cervical spinal cord layer 5 lateral borders of the reticulated partipsiCSegL5rL-0.5
Thoracal segment 1ipsiT1-0.5
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Lumbar enlargementipsiLSegE0.5
Lateral spinal nucleus L1ipsiLSpL1-0.5
Area X L1ipsiSCL10L13
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Spinal cord layer 6 L1ipsiSCL6L1-0.5
Spinal cord layer 4 L1ipsiSCL4L1-0.5
Spinal cord layer 1 L1ipsiSCL1L1-0.5
Spinal cord layer 7 L1ipsiSCL7L13
Spinal cord layer 8 L1ipsiSCL8L1-0.5
Lateral spinal nucleus L2ipsiLSpL2-0.5
Area X L2ipsiSCL10L23
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Spinal cord layer 6 L2ipsiSCL6L2-0.5
Spinal cord layer 4 L2ipsiSCL4L2-0.5
Spinal cord layer 1 L2ipsiSCL1L2-0.5
Spinal cord layer 7 L2ipsiSCL7L23
Spinal cord layer 8 L2ipsiSCL8L2-0.5
Lateral spinal nucleus L3ipsiLSpL3-0.5
Area X L3ipsiSCL10L33
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Spinal cord layer 6 L3ipsiSCL6L3-0.5
Spinal cord layer 4 L3ipsiSCL4L3-0.5
Spinal cord layer 1 L3ipsiSCL1L3-0.5
Spinal cord layer 7 L3ipsiSCL7L33
Spinal cord layer 8 L3ipsiSCL8L3-0.5
Lateral spinal nucleus L4ipsiLSpL4-0.5
Area X L4ipsiSCL10L43
Spinal cord layer 5 L4ipsiSCL5L4-0.5
Spinal cord layer 6 L4ipsiSCL6L4-0.5
Spinal cord layer 4 L4ipsiSCL4L4-0.5
Spinal cord layer 1 L4ipsiSCL1L4-0.5
Spinal cord layer 7 L4ipsiSCL7L43
Spinal cord layer 8 L4ipsiSCL8L4-0.5
Lateral spinal nucleus L5ipsiLSpL5-0.5
Area X L5ipsiSCL10L53
Spinal cord layer 5 L5ipsiSCL5L5-0.5
Spinal cord layer 6 L5ipsiSCL6L5-0.5
Spinal cord layer 4 L5ipsiSCL4L5-0.5
Spinal cord layer 1 L5ipsiSCL1L5-0.5
Spinal cord layer 7 L5ipsiSCL7L53
Spinal cord layer 8 L5ipsiSCL8L5-0.5
Lateral spinal nucleus L6ipsiLSpL6-0.5
Area X L6ipsiSCL10L63
Spinal cord layer 5 L6ipsiSCL5L6-0.5
Spinal cord layer 6 L6ipsiSCL6L6-0.5
Spinal cord layer 4 L6ipsiSCL4L6-0.5
Spinal cord layer 1 L6ipsiSCL1L6-0.5
Spinal cord layer 7 L6ipsiSCL7L63
Spinal cord layer 8 L6ipsiSCL8L6-0.5
Stomach wallipsiOrgsStomWS-10
Jaw muscle spindlescontraMuscJawS1
Jaw muscle spindlesipsiMuscJawS1
Trachea sideipsiOrgsTras4

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications