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Rat connectome



Periventricular hypothalamic nucleus left


Abbreviation
Pe
Color       
Superior regionsPeriventricular zone

SynonymsAbbr.Language
Nuclues hypothalamicus periventricularisPVLat
Area periventricularis hypothalamica communis  
Periventricular hypothalamic nucleus [Anterior hypothalamic area]  
Nucleus periventricularis  
Periventricular hypothalamic region Eng
Periventricular hypothalamic area  
Periventricular hypothalamic nucleusPEEng
Periventricular hypothalamic nucleusPeEng
Hypothalamic periventricular nucleus Eng
 PVTEng

SubregionsSide
Dorsal periventricular nucleusleft
Periventricular hypothalamic nucleus intranuclear arealeft
Periventricular hypothalamic nucleus posterior partleft
Periventricular hypothalamic nucleus subparaventricular partleft
Caudal periventricular hypothalamic regionleft
Periventricular hypothalamic nucleus ventral partleft
Periventricular hypothalamic nucleus rostral partleft
Periventricular hypothalamic nucleus parvicellular partleft
Periventricular hypothalamic nucleus dopaminergic neuronsleft
Nucleus periventricularis stellatocellularisleft
Substantia grisea periventricularisleft
Periventricular hypothalamic nucleus rostroventral partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Fasciculus retroflexusipsifr-2
Periaqueductal grayipsiPAG-2
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Periaqueductal gray rostral partipsiPAGR-0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Red nucleusipsiR1
External cortex of the inferior colliculusipsiECIC-0.5
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA-0.5
Peripeduncular nucleusipsiPP0.5
Middle part of the retrorubral fieldipsiRRmi0
Anterior lobeipsiAnL1
Locus coeruleusipsiLC1
Reticular systemipsiRF0
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB1
Parabrachial nucleus dorsal partipsiPBD0.5
Parabrachial nucleus ventral partipsiPBV0.5
Lateral reticular nucleusipsiLRt0.5
Nucleus of the solitary tractipsiSol0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract gelatinous partipsiSolG-0.5
Nucleus of the solitary tract lateral partipsiSolL-0.5
Nucleus of the solitary tract medial partipsiSolM-0.5
Dorsal motor nucleus of vagusipsi100.5
Dorsal raphe nucleusipsiDR1
Median raphe nucleusipsiMnR2
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg0
B4 serotonin cellsipsiB41
B6 subnucleusipsiB61
Median eminenceipsiME1
Median eminence external layeripsiMEeL-0.5
Median eminence ventral partipsiMEv-2
Median eminence middle portionipsiMEmi3
Median eminence middle portion subependymal layeripsiMEmise1
Diagonal band of BrocaipsiDBB0
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Peripheral medial septal nucleusipsiMSpe-0.5
Medial preoptic areaipsiMPA3
Magnocellular preoptic nucleusipsiMCPO3
Medial preoptic nucleusipsiMPO2
Median preoptic nucleusipsiMnPO-0.5
Surrounding of the vascular organ of the lamina terminalisipsiSVOLT-0.5
Vascular organ of the lamina terminalisipsiVOLT-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Medial division of the hypothalamusipsiMdH3
Anterior hypothalamic area posterior partipsiAHAP0
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe2
Anterior hypothalamic nucleus rostral zoneipsiAHnR3
Posterior hypothalamic areaipsiPHA-2
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus anterior partipsiVMHA3
Ventromedial hypothalamic nucleus medial partipsiVMHM3
Mediobasal hypothalamus anterior partipsiMeHypoAnt1
Mediobasal hypothalamus posterior partipsiMeHypoP2
Anteroventral periventricular nucleus 2ipsiAVPV21.5
Arcuate nucleusipsiArc2
Arcuate nucleus middle partipsiArcMi-0.5
Arcuate nucleus ventromedial partipsiArcVM1
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-3
Paraventricular nucleus of the hypothalamus magnocellular division medial magnocellular partipsiPaAMm-0.5
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM-0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo0.5
Paraventricular hypothalamic nucleus dorsomedial capipsiPadmc-0.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag-0.5
Paraventricular hypothalamic nucleus magnocellular division between PaLM and PaAMmipsiPaMagb-0.5
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo2
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP-0.5
Paraventricular nucleus anterior partipsiPaan0.5
Paraventricular nucleus dorsal edgeipsiPaDoE0.5
Paraventricular nucleus dorsal most portionipsiPaDom0.5
Paraventricular nucleus medial part at mid paraventricular hypothalamic nucleus levelipsiPamemi0.5
Paraventricular nucleus medial part at posterior paraventricular hypothalamic nucleus levelipsiPamepo0.5
Peri-paraventricular hypothalamic nucleusipsiPPa0.5
Ventral perinuclear paraventricular hypothalamic areaipsiPPaV-0.5
Periventricular hypothalamic nucleusipsiPe-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Medial mammillary nucleus lateral partipsiML-0.5
A8 dopamine cells retrorubral group lateral partipsiRRFL0
A8 dopamine cells retrorubral group medial partipsiRRFm0
Mediodorsal thalamic nucleus medial partipsiMDM2
Midline group of the dorsal thalamusipsiMTN2
Paraventricular thalamic nucleusipsiPV2
Paraventricular thalamic nucleus rostral partipsiPVr3
Reuniens thalamic nucleusipsiRe0.5
Zona incerta medial tipipsiZImt0.5
Medial habenular nucleusipsiMHb2
Pituitary glandipsiPIT3
Intermediate lobe of pituitaryipsiIPit3
Posterior lobe of pituitaryipsiPPit2
Basolateral amygdaloid nucleusipsiBL1
Basomedial amygdaloid nucleusipsiBM0
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Central amygdaloid nucleusipsiCe0
Anterior amygdaloid areaipsiAA0
Posterior amygdaloid nucleusipsiCOAp0.5
Nucleus of the lateral olfactory tractipsiLOT0
Medial amygdaloid nucleusipsiMe1
Amygdalohippocampal areaipsiAHi2
Ventral pallidumipsiVP3
Accumbens nucleusipsiAc0
Accumbens nucleus shellipsiAcbSh3
HippocampusipsiHIPP3
Dorsal hippocampus dentate gyrusipsiDDG-0.5
Lateral entorhinal cortexipsiLEnt0.5
Medial entorhinal cortexipsiMEnt0.5
Perirhinal cortexipsiA350
Ectorhinal cortexipsiA360.5
Postrhinal cortexipsiPOR0.5
Olfactory tubercleipsiTuO0
Lateral septal nucleusipsiLS3
Lateral septal nucleus intermediate partipsiLSI2.5
Lateral septal nucleus ventral partipsiLSV1
Border between medial and lateral septumipsiSERbML3
3d ventricleipsi3V2
Medial ependymal layer of the lateral ventricleipsiLVme1
Cervical segment 1ipsiCS13
Cervical segment 2ipsiCS23
Thoracal segment 1ipsiT10.5
Thoracal segment 2ipsiT20.5
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray medial partcontraPAGm0.5
Ventrolateral periaqueductal graycontraVLPAG0
Red nucleuscontraR0
Parabrachial nucleuscontraPB1
Nucleus of the solitary tract commissural partcontraSolC-0.5
Nucleus of the solitary tract gelatinous partcontraSolG-0.5
Nucleus of the solitary tract lateral partcontraSolL-0.5
Nucleus of the solitary tract medial partcontraSolM-0.5
Median eminencecontraME-0.5
Median eminence ventral partcontraMEv-2
Medial preoptic nucleuscontraMPO0.5
Lateral hypothalamic areacontraLH2
Anteroventral periventricular nucleus 2contraAVPV20.5
Arcuate nucleuscontraArc1
Arcuate nucleus middle partcontraArcMi-0.5
Paraventricular nucleus medial partcontraPame0.5
Intermediate lobe of pituitarycontraIPit3
Bed nucleus of the stria terminalis caudal part caudoventral regioncontraBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regioncontraBSTCapf1
Bed nucleus of the stria terminalis lateral divisioncontraBSTL3
Bed nucleus of the stria terminalis medial divisioncontraBSTM3
Intercapsular brown adipose tissueipsiOrgBATi-10
Lumbar epaxial musclesipsiMuscLep-0.5
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10
KidneyipsiOrgsKid-0.5
Urinary bladderipsiOrgUrBLa-0.5
Trigone of the urinary bladderipsiOrgUrBLaT-10
KidneycontraOrgsKid-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Periaqueductal grayipsiPAG0.5
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Ventral tegmental area A10ipsiVTA0
Peripeduncular areaipsiPPA0.5
Edinger Westphal nucleusipsiEW1.5
A5 noradrenaline cellsipsiA50.5
Locus coeruleusipsiLC3
Locus coeruleus cell body regionipsiLCcB3
Locus coeruleus anterior partipsiLCa3
Extreme dorsal edge of the locus coeruleusipsiEDLC0
Central position of the compact dorsal locus coeruleusipsiLCCCD3
Locus coeruleus posterior partipsiLCp1
Locus coeruleus ventral partipsiLCv1
Locus coeruleus ventromedial partipsiVMLC0
Nucleus incertus pars dissipataipsiNId-0.5
Reticular systemipsiRF0
Pontine reticular nucleus oral partipsiPnO1
Lateral parabrachial nucleusipsiLPB-0.5
Parabrachial nucleus dorsal partipsiPBD0.5
Parabrachial nucleus ventral partipsiPBV0.5
Lateral reticular nucleusipsiLRt0.5
Medial medullary reticular nucleusipsiMMdD1
Medullary reticular nucleus dorsal partipsiMdDd2
Subcoeruleus nucleusipsiSubC0
C1 adrenaline cellsipsiC1-0.5
C1 adrenaline cells medial partipsiC1m-0.5
C2 adrenaline cellsipsiC2-0.5
C3 adrenaline cellsipsiC3-10
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Trigeminal subnucleus caudalisipsi5SSC2
Nucleus of the solitary tractipsiSol0.5
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus caudal partipsiDRC3
Medial dorsal raphe nucleus level 3ipsiDRNML3-0.5
Medial dorsal raphe nucleus level 4ipsiDRNML4-0.5
Meidal dorsal raphe nucleus level 5ipsiDRNML5-0.5
Dorsal raphe nucleus rostral partipsiDRr1
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS2
Pontine raphe nucleusipsiPnR1
Pontine raphe nucleus oral partipsiPnRo-0.5
Raphe magnus nucleusipsiRMg2
B4 serotonin cellsipsiB41
B6 subnucleusipsiB61
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA21
Lateral paragigantocellular nucleusipsiLPGi1
Nucleus interstitialis striae medullarisipsiiSSM1
Median eminenceipsiME3
Median eminence middle portion subependymal layeripsiMEmise1
Preoptic regionipsiPREO-0.5
Medial preoptic areaipsiMPA3
Caudal pole of medial preoptic areaipsiMPAc3
Medial preoptic area medial partipsiMPAm1.5
Medial preoptic area periventricular partipsiMPApv-0.5
Medial preoptic nucleusipsiMPO1
Medial preoptic nucleus lateral partipsiMPOL1.5
Median preoptic nucleusipsiMnPO1
Dorsal tuberomammillary nucleusipsiDTM1
Vascular organ of the lamina terminalisipsiVOLT1
HypothalamusipsiHYPO1
Dorsomedial hypothalamic nucleusipsiDMHy3
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx1
Anterior hypothalamic area ventral part of central condensationipsiAHACv-0.5
Anterior hypothalamic nucleus ventromedial partipsiAHAvm2
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Subparaventricular zone ventral partipsiSuPZv1
Subparaventricular zone ventromedial partipsiSuPZvm-0.5
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus central partipsiVMHC1.5
Arcuate nucleusipsiArc3
Arcuate nucleus ventromedial partipsiArcVM2
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Paraventricular hypothalamic nucleusipsiPa1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Periventricular hypothalamic nucleusipsiPe-0.5
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps3
Suprachiasmatic nucleusipsiSCh2
Suprachiasmatic nucleus dorsomedial partipsiSCnDM3
Suprachiasmatic nucleus perinuclear zoneipsiSChpnz-0.5
Suprachiasmatic nucleus ventrolateral partipsiSCnVL1
Suprachiasmatic nucleus lateral shell regionipsiSChLS-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Incerto hypothalamic areaipsiicHYPO1
Mammillary peduncleipsimp2
Premammillary nucleus ventral partipsiPMV2.5
A8 dopamine cells retrorubral groupipsiRRF1
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic area anterior partipsiRChA-0.5
Paraventricular thalamic nucleusipsiPV2
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Retinal ganglion cellsipsiRETg-10
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL1
Basomedial amygdaloid nucleusipsiBM1
Anterior basomedial nucleusipsiBMA-0.5
Posterior basomedial nucleusipsiBMP1
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM-0.5
Bed nucleus of the stria terminalis fusiform partipsiFu3
Bed nucleus of the stria terminalis medial division posteromedial partipsiBSTMPM-0.5
Anterior amygdaloid area dorsal partipsiAAD-0.5
Cortical amygdaloid nucleusipsiCAn1
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp1
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus posterior partipsiMePo-0.5
Amygdalohippocampal areaipsiAHi1
Posteromedial cortical nucleusipsiPMCo-0.5
Accumbens nucleusipsiAc-0.5
Field CA1 of hippocampus ventral poleipsiCA1vp1
Subiculum ventral partipsiSv1
Subiculum ventral part caudal subdivisionipsiSvc1
Ventral subiculum rostromedial partipsiSvrm1
Lateral septal nucleusipsiLS-0.5
Ependyma of the 3d ventricleipsie3V3
Ependymal layer of the 4th ventricleipsi4Vep3
Ependymal layer of the cerebral aqueductipsiAqEp3
Ependymal layer of the lateral ventricleipsiLVep3
Area X C1ipsiSCL10C11
Spinal cord layer 3 C1ipsiSCL3C11
Spinal cord layer 4 C1ipsiSCL4C12
Spinal cord layer 1 C1ipsiSCL1C12
Spinal cord layer 2 C1ipsiSCL2C12
Area X C2ipsiSCL10C21
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C22
Spinal cord layer 1 C2ipsiSCL1C22
Spinal cord layer 2 C2ipsiSCL2C22
Central graycontraCG-0.5
Periaqueductal graycontraPAG0
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Locus coeruleuscontraLC1
Medullary reticular nucleus dorsal partcontraMdDd2
Principal sensory trigeminal nucleuscontraPr52
Spinal trigeminal nucleus interpolar partcontraSp5I2
Spinal trigeminal nucleus oral partcontraSp5O2
Trigeminal subnucleus caudaliscontra5SSC2
Medial preoptic area medial partcontraMPAm1
Medial preoptic nucleuscontraMPO-0.5
Medial preoptic nucleus lateral partcontraMPOL1
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Supraoptic nucleus [Supraoptic region]contraSO-0.5
Perifornical nucleuscontraPeF-0.5
Bed nucleus of the stria terminalis anterior medial partcontraBSTAM0.5
Area X C1contraSCL10C12
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C12
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Area X C2contraSCL10C22
Spinal cord layer 3 C2contraSCL3C22
Spinal cord layer 4 C2contraSCL4C22
Spinal cord layer 1 C2contraSCL1C22
Spinal cord layer 2 C2contraSCL2C22
ClitorisipsiOrgCLi1
VaginaipsiOrgVag1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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