University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Suprachiasmatic nucleus dorsomedial part left


Abbreviation
SCnDM
Color       
Superior regionsSuprachiasmatic nucleus

SynonymsAbbr.Language
Suprachiasmatic nucleus dorsomedial partSCnDMEng
Suprachiasmatic nucleus shell Eng

SubregionsSide
Suprachiasmatic nucleus dorsomedial quadrantleft
Caudal part of the dorsomedial suprachiasmatic nucleusleft
Suprachiasmatic nucleus medial shellleft
Suprachiasmatic nucleus lateral shell partleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG1
Ventral tegmental area A10ipsiVTA1
Caudal medulla oblongataipsiCMeOb-0.5
Olivary pretectal nucleusipsiOPT1
Median eminenceipsiME-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Medial septal nucleusipsiMS0
Preoptic regionipsiPREO3
Medial preoptic areaipsiMPA3
Anterodorsal preoptic nucleusipsiADP2
Medial preoptic nucleusipsiMPO2
Median preoptic nucleusipsiMnPO3
Ventrolateral preoptic nucleusipsiVLPO3
Ventromedial preoptic nucleusipsiVMPO-0.5
Dorsal tuberomammillary nucleusipsiDTM3
Ventral tuberomammillary nucleusipsiVTM1
Vascular organ of the lamina terminalisipsiVOLT1
Dorsomedial hypothalamic nucleusipsiDMHy3
Juxtaparaventricular part [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPV1
Lateral zoneipsiLHA0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM-3
Magnocellular nucleus of the lateral hypothalamusipsiMCLH1
Tuberal nucleusipsiTU1
Anterior hypothalamic areaipsiAHA1
Anterior hypothalamic area central partipsiAHAC1
Anterior hypothalamic area posterior partipsiAHAP1
Anterior hypothalamic nucleus ventromedial partipsiAHAvm2
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe2
Anteroventral preoptic nucleusipsiAnV1
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic areaipsiDMHyA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus anterior partipsiDMA3
Dorsomedial hypothalamic nucleus dorsal partipsiDMD3
Dorsomedial hypothalamic nucleus ventral partipsiDMV-3
Dorsomedial nucleus posterior partipsiDMHp1
Posterior hypothalamic areaipsiPHA3
Posterior hypothalamic nucleusipsiPH1
Subparaventricular zoneipsiSuPZ1
Subparaventricular zone between suprachiasmatic nucleus and paraventricular hypothalamic nucleusipsiSuPZSChbPa3
Subparaventricular area medial aspectipsiSuPZma3
Subparaventricular lateral aspectipsiSuPZLa3
Ventral tuberal areaipsiVeTA1
Area between ventromedial and dorsomedial hypothalamic nucleusipsiAbVMHaDMH1
Ventromedial hypothalamic nucleusipsiVMH1
Ventromedial hypothalamic nucleus central partipsiVMHC-3
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus lateral partipsiVMHL1
Anteroventral periventricular nucleus 2ipsiAVPV21
Arcuate nucleusipsiArc1
Internuclear areaipsiInA2
Paraventricular hypothalamic nucleus descending divisionipsiPVHd3
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP3
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus caudal part of the magnocellular division posterior partipsiPaCMagP-0.5
Caudal portion of the paraventricular nucleus medial parvocellular partipsiPaMepC-0.5
Periventricular hypothalamic nucleusipsiPe3
Periventricular hypothalamic nucleus posterior partipsiPePOp1
Periventricular zone preoptic levelipsiPeriVpL2
Preoptic periventricular nucleusipsiPePO1
Subparaventricular zone of the hypothalamus dorsal regionipsiSPd4
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps4
Suprachiasmatic nucleus perinuclear zoneipsiSChpnz1
Caudal peri-suprachiasmatic nucleusipsiSChpnzc-0.5
Suprachiasmatic preoptic nucleusipsiPSCh4
Supraoptic nucleus [Supraoptic region]ipsiSO3
Premammillary nucleus dorsal partipsiPMD-3
Premammillary nucleus medial partipsiPMM-3
Premammillary nucleus ventral partipsiPMV1
Perifornical nucleusipsiPeF0.5
Retrochiasmatic areaipsiRCh1
Anteromedial thalamic nucleusipsiAM1
Central medial thalamic nucleusipsiCM0.5
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV4
Reuniens thalamic nucleusipsiRe2
Zona incertaipsiZI2
Medial pretectal nucleusipsiMPT1
Pineal glandipsiPi3
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm-3
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc-3
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif1
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt1
Medial amygdaloid nucleusipsiMe1
Field CA1 of hippocampusipsiCA1-3
Precommissural nucleusipsiPrC1
Intergeniculate leafipsiIGL2
Ventral lateral geniculate nucleusipsiVLG1
Lateral septal nucleusipsiLS2
Lateral septal nucleus rostral partipsiLSr1
Lateral septal nucleus ventral partipsiLSV-3
Ventral tegmental area A10contraVTA-0.5
Caudal medulla oblongatacontraCMeOb-0.5
Medial preoptic areacontraMPA-0.5
Medial preoptic nucleuscontraMPO0.5
Ventrolateral preoptic nucleuscontraVLPO0.5
Dorsal tuberomammillary nucleuscontraDTM-0.5
Dorsomedial hypothalamic nucleuscontraDMHy1
Anterior hypothalamic areacontraAHA-0.5
Dorsal hypothalamic areacontraDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM1
Dorsomedial hypothalamic nucleus dorsal partcontraDMD-0.5
Posterior hypothalamic areacontraPHA-0.5
Subparaventricular zonecontraSuPZ-0.5
Subparaventricular area medial aspectcontraSuPZma-0.5
Subparaventricular lateral aspectcontraSuPZLa1
Ventral tuberal areacontraVeTA-0.5
Area between ventromedial and dorsomedial hypothalamic nucleuscontraAbVMHaDMH1
Ventromedial hypothalamic nucleuscontraVMH-0.5
Anteroventral periventricular nucleus 2contraAVPV20.5
Paraventricular hypothalamic nucleuscontraPa3
Paraventricular hypothalamic nucleus caudal part of the magnocellular division posterior partcontraPaCMagP-0.5
Caudal portion of the paraventricular nucleus medial parvocellular partcontraPaMepC-0.5
Suprachiasmatic nucleuscontraSCh-0.5
Suprachiasmatic nucleus dorsomedial partcontraSCnDM3
Suprachiasmatic nucleus perinuclear zonecontraSChpnz-0.5
Perifornical nucleuscontraPeF-0.5
Retrochiasmatic areacontraRCh-0.5
Anteromedial thalamic nucleuscontraAM-0.5
Central medial thalamic nucleuscontraCM-0.5
Paratenial thalamic nucleuscontraPT-0.5
Reuniens thalamic nucleuscontraRe-0.5
Lateral septal nucleuscontraLS-0.5
Liver sideipsiOrgsLivs-0.5
Liver lobeipsiOrgsLivL2
Thyroid glandipsiOrgThyroid-0.5
KidneyipsiOrgsKid-0.5
KidneycontraOrgsKid-0.5

Input from

NameSideAbbr.WeightDetails
Suprachiasmatic nucleus ventrolateral partipsiSCnVL-0.5
RetinaipsiRET0
Retina nasal part ganglion cell layeripsiRETngcL3
Retinal ganglion cellsipsiRETg1
Lateral septal nucleus ventrolateral partipsiLSvl1
Suprachiasmatic nucleus dorsomedial partcontraSCnDM3
EyeipsiOrgEye-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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