University of Rostock

Department of Anatomy

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Rat connectome



Suprachiasmatic nucleus ventrolateral part left


Abbreviation
SCnVL
Color       
Superior regionsSuprachiasmatic nucleus

SynonymsAbbr.Language
Suprachiasmatic nucleus ventrolateral partSCnVLEng
Suprachismatic nucleus core Eng
Ventrolateral retinorecipient zone of the suprachiasmatic nucleus Eng

SubregionsSide
Rostral part of suprachiasmatic nucleus ventrolateral partleft
Mid suprachiasmatic nucleus ventrolateral partleft
Ventrolateral retinorecipient suprachiasmatic arealeft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG1
Ventral tegmental area A10ipsiVTA3
Olivary pretectal nucleusipsiOPT1
Medial eminence internal layeripsiMEI-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Medial septal nucleusipsiMS0
Preoptic regionipsiPREO0.5
Medial preoptic areaipsiMPA2
Anterodorsal preoptic nucleusipsiADP2
Medial preoptic nucleusipsiMPO1
Median preoptic nucleusipsiMnPO2
Dorsal tuberomammillary nucleusipsiDTM2
Ventral tuberomammillary nucleusipsiVTM1
Vascular organ of the lamina terminalisipsiVOLT-3
Dorsomedial hypothalamic nucleusipsiDMHy1
Margin of the dorsomedial hypothalamic nucleusipsiDMHyM-0.5
Juxtaparaventricular part [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPV2
Lateral zoneipsiLHA0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM-3
Lateral hypothalamic area ventral partipsiLHAvp-2
Magnocellular nucleus of the lateral hypothalamusipsiMCLH1
Tuberal nucleusipsiTU1
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area central partipsiAHAC1
Anterior hypothalamic area dorsomedial partipsiAHAdm3
Anterior hypothalamic area posterior partipsiAHAP2
Anterior hypothalamic nucleus ventromedial partipsiAHAvm3
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Dorsal periventricular nucleus [Anterior hypothalamic area]ipsiDPe-0.5
Anteroventral preoptic nucleusipsiAnV1
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus anterior partipsiDMA3
Dorsomedial hypothalamic nucleus dorsal partipsiDMD2
Dorsomedial hypothalamic nucleus ventral partipsiDMV-3
Dorsomedial nucleus posterior partipsiDMHp1
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleusipsiPH1
Subparaventricular zoneipsiSuPZ2
Rostral subparaventricular zoneipsiRSuPZ3
Caudal subparaventricular zoneipsiCSuPZ1
Subparaventricular zone between suprachiasmatic nucleus and paraventricular hypothalamic nucleusipsiSuPZSChbPa3
Subparaventricular area medial aspectipsiSuPZma3
Subparaventricular lateral aspectipsiSuPZLa3
Ventral tuberal areaipsiVeTA2
Ventromedial hypothalamic nucleusipsiVMH1
Ventromedial hypothalamic nucleus central partipsiVMHC-3
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus lateral partipsiVMHL1
Ventromedial hypothalamic nucleus surrounding areaipsiVMHSur-0.5
Arcuate nucleusipsiArc1
Area around the arcuate nucleusipsiArcaa-0.5
Internuclear areaipsiInA2
Paraventricular hypothalamic nucleus caudal partipsiPaPoC2
Paraventricular hypothalamic nucleus descending divisionipsiPVHd-3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP0.5
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP1
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP2
Paraventricular hypothalamic nucleusipsiPa2
Border of the posterior magnocellular and medial parvocellular subdivision at mid-level of the rostrocaudal extentipsiPabPmmp0.5
Paraventricular hypothalamic nucleus magnocellular division posterior part caudal levelipsiPaMagPC0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD0.5
Paraventricular hypothalamic nucleus periventricular partipsiPapv0.5
Periventricular hypothalamic nucleusipsiPe1
Periventricular hypothalamic nucleus posterior partipsiPePOp1
Periventricular zone preoptic levelipsiPeriVpL1
Preoptic periventricular nucleusipsiPePO1
Subparaventricular zone of the hypothalamus dorsal regionipsiSPd4
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps4
Suprachiasmatic nucleus dorsomedial partipsiSCnDM-0.5
Suprachiasmatic nucleus perinuclear zoneipsiSChpnz3
Caudal peri-suprachiasmatic nucleusipsiSChpnzc-0.5
Suprachiasmatic preoptic nucleusipsiPSCh4
Ventral hypothalamic regionipsiVHR-0.5
Mammillary bodyipsiCMAM0
Premammillary nucleus dorsal partipsiPMD-3
Premammillary nucleus medial partipsiPMM-3
Premammillary nucleus ventral partipsiPMV1
Supramammillar nucleusipsiSuM0
Perifornical nucleusipsiPeF0
Retrochiasmatic areaipsiRCh2
Anteromedial thalamic nucleusipsiAM1
Central medial thalamic nucleusipsiCM0.5
Submedius thalamic nucleusipsiSub0
Midline group of the dorsal thalamusipsiMTN0
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV4
Reuniens thalamic nucleusipsiRe2
Zona incertaipsiZI3
Medial pretectal nucleusipsiMPT1
Pineal glandipsiPi1
Medial forebrain bundleipsimfb-2
Bed nucleus of the stria terminalisipsiBST0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm-3
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc-3
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif1
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt1
Medial amygdaloid nucleusipsiMe1
Field CA1 of hippocampusipsiCA11
Infralimbic cortex anterior part layer 5ipsiILAnL52
Infralimbic cortex anterior part layer 6ipsiILAnL62
Precommissural nucleusipsiPrC1
Intergeniculate leafipsiIGL2
Ventral lateral geniculate nucleusipsiVLG1
Lateral septal nucleusipsiLS2
Lateral septal nucleus rostral partipsiLSr2
Lateral septal nucleus ventral partipsiLSV2
Stria terminalisipsist0
Preoptic regioncontraPREO-0.5
Medial preoptic areacontraMPA-0.5
Medial preoptic nucleuscontraMPO0.5
Dorsal tuberomammillary nucleuscontraDTM-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Anterior hypothalamic areacontraAHA-0.5
Dorsal hypothalamic areacontraDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Dorsomedial hypothalamic nucleus dorsal partcontraDMD-0.5
Posterior hypothalamic areacontraPHA-0.5
Subparaventricular zonecontraSuPZ-0.5
Subparaventricular area medial aspectcontraSuPZma-0.5
Subparaventricular lateral aspectcontraSuPZLa1
Ventral tuberal areacontraVeTA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Suprachiasmatic nucleuscontraSCh-0.5
Suprachiasmatic nucleus perinuclear zonecontraSChpnz-0.5
Suprachiasmatic nucleus ventrolateral partcontraSCnVL-0.5
Retrochiasmatic areacontraRCh-0.5
Anteromedial thalamic nucleuscontraAM-0.5
Central medial thalamic nucleuscontraCM-0.5
Paratenial thalamic nucleuscontraPT-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Bed nucleus of the stria terminaliscontraBST-0.5
Lateral septal nucleuscontraLS-0.5
Liver lobeipsiOrgsLivL2

Input from

NameSideAbbr.WeightDetails
Olivary pretectal nucleusipsiOPT1
Posterior pretectal nucleusipsiPPT1
RetinaipsiRET3
Retina nasal part ganglion cell layeripsiRETngcL3
Retinal ganglion cellsipsiRETg3
Subiculum ventral partipsiSv-0.5
Infralimbic cortexipsiIL1
Intergeniculate leafipsiIGL3
Suprachiasmatic nucleus ventrolateral partcontraSCnVL-0.5
RetinacontraRET3
EyeipsiOrgEye-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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