University of Rostock

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Rat connectome



Cortex amygdala transition zone left


Abbreviation
CxA
Color       
Superior regionsSuperficial amygdaloid complex

SynonymsAbbr.Language
Cortex amygdala transition zoneCxAEng
Periamygdaloid cortex  
Periamygdaloid region Eng
Cortex amygdala transition area Eng
Cortex-amygdala transition area Eng
Ventrolateral to supraoptic nucleus somata Eng

SubregionsSide
Cortex amygdala transition zone layer 1left
Cortex amygdala transition zone layer 2left
Cortex amygdala transition zone layer 3left

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL0.5
Central tegmental field dorsal partipsiTGACd1
Laterodorsal tegmental nucleusipsiLDTg0.5
Dorsal tegmental nucleusipsiDTg0.5
Pedunculopontine tegmental nucleusipsiPPTg0.5
Locus coeruleusipsiLC1
Lateral parabrachial nucleusipsiLPB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Lateral hypothalamic area at the level of the caudal half to the ventromedial hypothalamic nucleusipsiLHAaCVMH-0.5
Paraventricular hypothalamic nucleusipsiPa1
Mediodorsal thalamic nucleus central partipsiMDC2
Posterolateral cortical nucleusipsiPLCo-1
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa3
Accumbens nucleus posterolateral partipsiAcbpl2
Lateral nucleus accumbensipsiAcl2
Ventral striatumipsiCPuv-3
Subiculum ventral partipsiSv-0.5
Lateral entorhinal cortex ventral partipsiVLEA-0.5
Lateral entorhinal cortex ventral part layer 2ipsiVLEAL2-0.5
Lateral entorhinal cortex ventral part layer 3ipsiVLEAL3-0.5
Prepiriform cortexipsiPRPIR0
Infralimbic cortex layer 1ipsiILL10
Agranular insular cortexipsiAI-0.5
Agranular insular cortex dorsal partipsiAID0
Agranular insular cortex posterior partipsiAIP-0.5
Agranular insular cortex ventral partipsiAIV0
Perirhinal cortexipsiA350
Medial orbital cortexipsiMO-0.5
Granular cell layer of the olfactory bulbipsiOBgra1
Olfactory tubercleipsiTuO2
Olfactory tubercle lateral partipsiTuOL0.5
Septal regionipsiSER0
Nuclei of the lateral lemniscuscontraNLL0.5
Central tegmental field dorsal partcontraTGACd0.5
Laterodorsal tegmental nucleuscontraLDTg0.5
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg0.5
Locus coeruleuscontraLC0.5
Lateral parabrachial nucleuscontraLPB0.5
Paraventricular hypothalamic nucleuscontraPa0
Piriform cortexcontraPir-0.5
Agranular insular cortexcontraAI-0.5
Agranular insular cortex posterior partcontraAIP-0.5

Input from

NameSideAbbr.WeightDetails
Endopiriform systemipsiEnN-0.5
Caudal endopiriform regionipsiCEn2
Middle endopiriform regionipsiMEn3
Preendopiriform regionipsiPEn1
Rostral endopiriform regionipsiREn2
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa3
Ventral pallidum rostral partipsiVPr-0.5
Piriform cortexipsiPir-0.5
Posterior piriform cortex superficial pyramidal cellsipsiPPIRsp-0.5
Accessory olfactory bulbipsiAOB-0.5
Mitral cell layer of the accessory olfactory bulbipsiAOBml-0.5
Olfactory bulb A16ipsiMOB-0.5
Glomerular layer of the olfactory bulbipsiOBglo-0.5
Mitral cells of the olfactory bulbipsiMiC-0.5
Ventral mitral cell layer of the olfactory bulbipsiMiV-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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