University of Rostock

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Rat connectome



Nuclei of the lateral lemniscus left


Abbreviation
NLL
Color       
Superior regionsLemniscal nuclei

SynonymsAbbr.Language
Nuclei of the lateral lemniscusNLLEng
N. lateral lemniscus  
Lateral lemniscal nuclei  
Lemniscal complex  
N. of the lateral lemniscus  
Nuclei of the lateral lemniscusNLLEng
Nucleus of the lateral lemniscus  

SubregionsSide
Core nuclei of the lateral lemniscusleft
Horizontal cell group of the lateral lemniscusleft
Perilemniscal zoneleft
Sagulum nucleusleft
Nuclei of the lateral lemniscus rostral partleft
Nuclei of the lateral lemniscus caudal partleft
Nuclei of the lateral lemniscus dorsal partleft
Nuclei of the lateral lemniscus ventral partleft
Ventral rostral part of the nuclei of the lateral lemniscusleft
Nuclei of the lateral lemniscus lateral partleft

Output to

NameSideAbbr.WeightDetails
Central gray lateral dorsal partipsiCGLD2
Nuclei of the lateral lemniscusipsiNLL2
Inferior colliculusipsiICOL3
Caudal part of inferior colliculusipsiICOLC2
External cortex of the inferior colliculusipsiECIC3
Superior colliculusipsiSC1.5
Central tegmental field dorsal partipsiTGACd0
Ventrolateral tegmental areaipsiVLTg0
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
CerebellumipsiCERE2
Locus coeruleusipsiLC2
Dorsomedial tegmental areaipsiDMTg2
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus ventral part caudalipsiPNRVC0
Pontine reticular nucleus caudal partipsiPNC2
Lateral parabrachial nucleusipsiLPB1
Subcoeruleus nucleus dorsal partipsiSubCD2
Facial nucleusipsi7-0.5
Motor trigeminal nucleusipsiMo5-0.5
CochleaipsiCO-0.5
Cochlear nucleusipsiCON-0.5
Rostral periolivary regionipsiRPO3
Rostral ventral respiratory groupipsiRVRG1.5
Subparafascicular thalamic nucleus caudal partipsiSPFc1
Subparafascicular thalamic nucleus medial partipsiSPFme1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI0.5
Ventral half of the lateral lemniscusipsillvh3
Medial geniculate nucleusipsiMG-0.5
Central gray lateral dorsal partcontraCGLD1
Nuclei of the lateral lemniscuscontraNLL3
Inferior colliculuscontraICOL-0.5
Caudal part of inferior colliculuscontraICOLC1
External cortex of the inferior colliculuscontraECIC2
Ventrolateral cortex of the inferior colliculuscontraICOLvL-0.5
Superior colliculuscontraSC1.5
Central tegmental field dorsal partcontraTGACd0
Ventrolateral tegmental areacontraVLTg-0.5
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg0.5
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg3
CerebellumcontraCERE1
Locus coeruleuscontraLC1
Dorsomedial tegmental areacontraDMTg1
Mesencephalic reticular formationcontraMRF1
Pontine reticular nucleuscontraPRN1
Pontine reticular nucleus ventral part caudalcontraPNRVC-0.5
Pontine reticular nucleus caudal partcontraPNC1
Lateral parabrachial nucleuscontraLPB2
Subcoeruleus nucleus dorsal partcontraSubCD1
Facial nucleus medial partcontra7M-0.5
Motor trigeminal nucleuscontraMo5-0.5
Rostral periolivary regioncontraRPO-0.5
Rostral ventral respiratory groupcontraRVRG0.5
Ventrobasal complexcontraVB1
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Zona incertacontraZI0
Ventral half of the lateral lemniscuscontrallvh-0.5
Medial geniculate nucleus ventral partcontraMGV1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Nuclei of the lateral lemniscusipsiNLL2
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF0
Nucleus of DarkschewitschipsiDk0
Inferior colliculusipsiICOL4
Superior colliculusipsiSC2.5
Substantia nigra compact partipsiSNC1
Substantia nigra lateral partipsiSNL1
Substantia nigra reticular partipsiSNR0.5
Ventral tegmental area A10ipsiVTA0.5
Caudal linear nucleus of the rapheipsiCLi0.5
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg0
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg1
Edinger Westphal nucleusipsiEW1
Interposed cerebellar nucleiipsiICN0.5
Lateral cerebellar nucleusipsiCERL1
Medial cerebellar nucleusipsiMed0.5
Locus coeruleusipsiLC1
Prepositus nucleusipsiPr1
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleusipsiPRN2.5
Parabrachial nucleusipsiPB0
Gigantocellular reticular nucleusipsiGi1.5
Gigantocellular reticular nucleus alpha partipsiGiA3
Medullary reticular nucleusipsiMdD1
Supragenual nucleusipsiSGe0
Area postremaipsiAP0.5
Principal sensory trigeminal nucleusipsiPr53
Spinal trigeminal nucleus caudal partipsiSp5C0.5
Spinal trigeminal nucleus interpolar partipsiSp5I1
Spinal trigeminal nucleus oral partipsiSp5O1.5
Dorsal cochlear nucleusipsiDC2
Ventral cochlear nucleusipsiVC4
Cochlear root neuronsipsiCORN0
Spinal vestibular nucleusipsiSpVe0.5
Superior vestibular nucleusipsiSuVe1
Medial vestibular nucleusipsiMVe1
Lateral vestibular nucleusipsiLVe0.5
Nucleus of the solitary tractipsiSol1.5
Dorsal raphe nucleusipsiDR1
Linear nucleus of the rapheipsiLIR0
Median raphe nucleusipsiMnR1
Medial raphe nucleusipsiMeR0.5
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg1
Cuneate nucleusipsiCu1
GracileipsiGra1
External cuneate nucleusipsiECu1
Superior oliveipsiSuOLi4
Superior paraolivary complex lateral partipsiSOCl-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi2.5
Rostral ventral respiratory groupipsiRVRG1
Endopiriform systemipsiEnN1
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI0.5
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA0.5
Magnocellular preoptic nucleusipsiMCPO0.5
Tuberomammillary nucleusipsiTuM1
Dorsomedial hypothalamic nucleusipsiDMHy0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0
Lateral zoneipsiLHA0
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area dorsal partipsiLHd0
Lateral hypothalamic area perifornical partipsiPFx0.5
Lateral hypothalamic area ventral partipsiLHAvp1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Posterior hypothalamic areaipsiPHA0.5
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Ventromedial hypothalamic nucleusipsiVMH0.5
Periventricular zoneipsiPVZ0
Paraventricular hypothalamic nucleusipsiPa1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
Lateral mammillary nucleusipsiLM0
Medial mammillary nucleusipsiMMn0
Supramammillar nucleusipsiSuM0.5
Medial part of the caudal perifornical areaipsiPeFCM0
Lateral part of the caudal perifornical areaipsiPeFCL0
Parafascicular thalamic nucleusipsiPF2
Nucleus of the stria medullarisipsiSM0
Zona incertaipsiZI3
Lateral habenular nucleusipsiLHb0.5
Anterior pretectal nucleusipsiAPT2
Medial terminal nucleus of the accessory optic tractipsiMT0.5
Bed nucleus of the stria terminalisipsiBST2
Central amygdaloid nucleusipsiCe1
Cortex amygdala transition zoneipsiCxA0.5
Amygdalopiriform transition areaipsiAPir1
Anterior amygdaloid areaipsiAA0.5
Medial amygdaloid nucleusipsiMe1
Medial globus pallidusipsiMGP1
Ventral pallidumipsiVP1
Subthalamic nucleusipsiSTh0.5
Cingulate cortexipsiCg0
Frontal association cortexipsiFrA0
Parietal association cortexipsiPtA1
Temporal cortexipsiTE0.5
Perirhinal cortexipsiA351
Medial prefrontal cortexipsimPFC1
Orbital cortexipsiOrC0
Magnocellular nucleus of the posterior commissureipsiMCPC1
Medial geniculate nucleusipsiMG-1
Medial geniculate nucleus dorsal partipsiMGD-1
Medial geniculate nucleus dorsal part medial subdivisionipsiMGDm-1
Medial geniculate nucleus medial partipsiMGM-1
Medial geniculate nucleus ventral partipsiMGV1
Interpeduncular nucleusipsiIP1
Lateral septal nucleusipsiLS0
Dorsal horn C1ipsiDHC11
Dorsal horn C2ipsiDHC21
Dorsal horn C3ipsiDHC31
Dorsal horn C4ipsiDHC41
Dorsal horn C5ipsiDHC51
Dorsal horn C6ipsiDHC61
Dorsal horn C7ipsiDHC71
Dorsal horn C8ipsiDHC81
Dorsal horn T1ipsiDHT11
Dorsal horn T2ipsiDHT21
Dorsal horn T3ipsiDHT31
Dorsal horn T4ipsiDHT41
Dorsal horn T5ipsiDHT51
Dorsal horn T6ipsiDHT61
Dorsal horn T7ipsiDHT71
Dorsal horn T8ipsiDHT81
Dorsal horn T9ipsiDHT91
Dorsal horn T10ipsiDHT101
Dorsal horn T11ipsiDHT111
Dorsal horn T12ipsiDHT121
Dorsal horn T13ipsiDHT131
Dorsal horn L1ipsiDHL11
Dorsal horn L2ipsiDHL21
Dorsal horn L3ipsiDHL31
Dorsal horn L4ipsiDHL41
Dorsal horn L5ipsiDHL51
Dorsal horn L6ipsiDHL61
Central graycontraCG2
Nuclei of the lateral lemniscuscontraNLL3
Interstitial nucleus of medial longitudinal fasciculuscontraIMLF0
Nucleus of DarkschewitschcontraDk0
Inferior colliculuscontraICOL4
Superior colliculuscontraSC2
Substantia nigra compact partcontraSNC1
Substantia nigra lateral partcontraSNL1
Substantia nigra reticular partcontraSNR0.5
Ventral tegmental area A10contraVTA0.5
Caudal linear nucleus of the raphecontraCLi0.5
Laterodorsal tegmental nucleuscontraLDTg2
Ventral tegmental nucleuscontraVTg0
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg1
Edinger Westphal nucleuscontraEW0
Interposed cerebellar nucleicontraICN0.5
Lateral cerebellar nucleuscontraCERL1
Medial cerebellar nucleuscontraMed0.5
Locus coeruleuscontraLC1
Prepositus nucleuscontraPr1.5
Deep mesencephalic nucleuscontraDpMe1
Pontine reticular nucleuscontraPRN2
Parabrachial nucleuscontraPB0
Gigantocellular reticular nucleuscontraGi1
Medullary reticular nucleuscontraMdD1
Supragenual nucleuscontraSGe0
Area postremacontraAP0.5
Principal sensory trigeminal nucleuscontraPr53
Spinal trigeminal nucleus caudal partcontraSp5C0.5
Spinal trigeminal nucleus interpolar partcontraSp5I1
Spinal trigeminal nucleus oral partcontraSp5O1
Cochlear nucleuscontraCON3
Dorsal cochlear nucleuscontraDC2
Posteroventral cochlear nucleuscontraPVCON4
Ventral cochlear nucleuscontraVC4
Spinal vestibular nucleuscontraSpVe0.5
Superior vestibular nucleuscontraSuVe1
Medial vestibular nucleuscontraMVe1
Lateral vestibular nucleuscontraLVe0.5
Nucleus of the solitary tractcontraSol1
Dorsal raphe nucleuscontraDR1
Linear nucleus of the raphecontraLIR0
Median raphe nucleuscontraMnR1
Medial raphe nucleuscontraMeR0.5
Pontine raphe nucleuscontraPnR1
Raphe magnus nucleuscontraRMg1
Cuneate nucleuscontraCu1
GracilecontraGra1
External cuneate nucleuscontraECu1
Superior olivecontraSuOLi2
Paragigantocellular reticular nucleuscontraPGi1
Lateral paragigantocellular nucleuscontraLPGi2
Rostral ventral respiratory groupcontraRVRG1
Endopiriform systemcontraEnN1
Nucleus of the horizontal limb of the diagonal bandcontraHDB1
Nucleus of the vertical limb of the diagonal bandcontraVDB0
Basal nucleus MeynertcontraB2
Substantia innominatacontraSI0.5
Lateral preoptic areacontraLPO1
Medial preoptic areacontraMPA0.5
Magnocellular preoptic nucleuscontraMCPO0.5
Tuberomammillary nucleuscontraTuM1
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR0
Lateral hypothalamic areacontraLH2
Lateral hypothalamic area dorsal partcontraLHd0
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0
Posterior hypothalamic nucleus caudal partcontraPHCa0
Posterior hypothalamic nucleus rostral partcontraPHRo0
Ventromedial hypothalamic nucleuscontraVMH0.5
Periventricular zonecontraPVZ0
Paraventricular hypothalamic nucleuscontraPa0.5
Lateral mammillary nucleuscontraLM0
Medial mammillary nucleuscontraMMn0
Supramammillar nucleuscontraSuM0.5
Medial part of the caudal perifornical areacontraPeFCM0
Lateral part of the caudal perifornical areacontraPeFCL0
Parafascicular thalamic nucleuscontraPF2
Nucleus of the stria medullariscontraSM0
Zona incertacontraZI2
Lateral habenular nucleuscontraLHb0.5
Anterior pretectal nucleuscontraAPT2
Medial terminal nucleus of the accessory optic tractcontraMT0.5
Bed nucleus of the stria terminaliscontraBST2
Central amygdaloid nucleuscontraCe0.5
Cortex amygdala transition zonecontraCxA0.5
Amygdalopiriform transition areacontraAPir1
Anterior amygdaloid areacontraAA0.5
Medial amygdaloid nucleuscontraMe1
Medial globus palliduscontraMGP1
Ventral pallidumcontraVP1
Subthalamic nucleuscontraSTh0.5
Cingulate cortexcontraCg0
Frontal association cortexcontraFrA0
Parietal association cortexcontraPtA1
Temporal cortexcontraTE0.5
Perirhinal cortexcontraA351
Medial prefrontal cortexcontramPFC0.5
Orbital cortexcontraOrC0
Magnocellular nucleus of the posterior commissurecontraMCPC1
Interpeduncular nucleuscontraIP1
Lateral septal nucleuscontraLS0
Dorsal horn C1contraDHC11
Dorsal horn C2contraDHC21
Dorsal horn C3contraDHC31
Dorsal horn C4contraDHC41
Dorsal horn C5contraDHC51
Dorsal horn C6contraDHC61
Dorsal horn C7contraDHC71
Dorsal horn C8contraDHC81
Dorsal horn T1contraDHT11
Dorsal horn T2contraDHT21
Dorsal horn T3contraDHT31
Dorsal horn T4contraDHT41
Dorsal horn T5contraDHT51
Dorsal horn T6contraDHT61
Dorsal horn T7contraDHT71
Dorsal horn T8contraDHT81
Dorsal horn T9contraDHT91
Dorsal horn T10contraDHT101
Dorsal horn T11contraDHT111
Dorsal horn T12contraDHT121
Dorsal horn T13contraDHT131
Dorsal horn L1contraDHL11
Dorsal horn L2contraDHL21
Dorsal horn L3contraDHL31
Dorsal horn L4contraDHL41
Dorsal horn L5contraDHL51
Dorsal horn L6contraDHL61

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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