University of Rostock

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Rat connectome



Peripallidal region left


Abbreviation
PePa
Color       
Superior regionsGlobus pallidus

SynonymsAbbr.Language
Peripallidal regionPePaEng

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Central tegmental fieldipsiTGAC1
Substantia nigra A9ipsiSN0
Ventral tegmental area A10ipsiVTA1
Laterodorsal tegmental nucleusipsiLDTg0
Locus coeruleusipsiLC0
Parabrachial nucleusipsiPB1
Raphe nucleiipsiRAN1
Endopiriform systemipsiEnN0
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Medial septal nucleusipsiMS0
Substantia innominataipsiSI1
Tuberomammillary nucleusipsiTuM0
Lateral hypothalamic nucleusipsiLHN1
Medial hypothalamic groupipsiMHYPOg0
Supramammillar nucleusipsiSuM0
Central medial thalamic nucleusipsiCM3
Parafascicular thalamic nucleusipsiPF3
Rhomboid thalamic nucleusipsiRh3
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV3
Reuniens thalamic nucleusipsiRe3
Lateral habenular nucleusipsiLHb0
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB0
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe1
Cortex amygdala transition zoneipsiCxA0
Anterior cortical amygdaloid nucleusipsiACo0
Medial amygdaloid nucleusipsiMe1
Ventral pallidumipsiVP0
Accumbens nucleusipsiAc1
Caudate putamenipsiCPu3
Subthalamic nucleusipsiSTh0
HippocampusipsiHIPP0
Entorhinal cortexipsiEnt0
Piriform cortexipsiPir0
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Agranular insular cortexipsiAI1
Perirhinal cortexipsiA351
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO1
Ventrolateral orbital areaipsiVLO1
Anterior olfactory nucleusipsiAON0
Olfactory tubercleipsiTuO0
Lateral septal nucleusipsiLS0
Nucleus of the horizontal limb of the diagonal bandcontraHDB0

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Central tegmental fieldipsiTGAC2
Substantia nigra A9ipsiSN4
Ventral tegmental area A10ipsiVTA2
Laterodorsal tegmental nucleusipsiLDTg1
Locus coeruleusipsiLC2
Parabrachial nucleusipsiPB2
Raphe nucleiipsiRAN2
Endopiriform systemipsiEnN0
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Medial septal nucleusipsiMS0
Substantia innominataipsiSI1
Tuberomammillary nucleusipsiTuM1
Lateral hypothalamic area caudal partipsiLHc-0.5
Lateral hypothalamic nucleusipsiLHN2
Lateral hypothalamic area middle partipsiLHmi-0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Medial hypothalamic groupipsiMHYPOg0
Supramammillar nucleusipsiSuM1
Central medial thalamic nucleusipsiCM2
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh2
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe2
Lateral habenular nucleusipsiLHb0
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB0
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe1
Cortex amygdala transition zoneipsiCxA0
Anterior cortical amygdaloid nucleusipsiACo0
Medial amygdaloid nucleusipsiMe1
Ventral pallidumipsiVP0
Accumbens nucleusipsiAc3
Caudate putamenipsiCPu4
Subthalamic nucleusipsiSTh4
HippocampusipsiHIPP0
Entorhinal cortexipsiEnt0
Piriform cortexipsiPir0
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Agranular insular cortexipsiAI3
Perirhinal cortexipsiA353
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO1
Ventrolateral orbital areaipsiVLO1
Anterior olfactory nucleusipsiAON0
Olfactory tubercleipsiTuO0
Lateral septal nucleusipsiLS0
Nucleus of the horizontal limb of the diagonal bandcontraHDB0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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