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Rat connectome



Endopiriform system left


Abbreviation
EnN
Color       
Superior regionsBasal forebrain

SynonymsAbbr.Language
Endopyriform cortex  
Endopiriform nucleusEPEng
Endopiriform nucleus Eng
Endopiriform systemEnNEng
Endopiriform cortex Eng
Endopyriform nucleus Eng

SubregionsSide
Caudal endopiriform regionleft
Central endopiriform systemleft
Dorsal endopiriform nucleusleft
Intermediate endopiriform nucleusleft
Middle endopiriform regionleft
Preendopiriform regionleft
Rostral endopiriform regionleft
Ventral endopiriform nucleusleft
Anterior part of the endopiriform nucleusleft
Deep endopiriform nucleusleft
Endopiriform nucleus layersleft
Posterior endopiriform nucleusleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG2
Nuclei of the lateral lemniscusipsiNLL1
Superior colliculusipsiSC3
Central tegmental field dorsal partipsiTGACd0
Rostromedial tegmental nucleusipsiRMTg1
Ventral tegmental area A10ipsiVTA2
Substantia nigra ventral tegmental area transition regionipsiSNVTAtn-0.5
Laterodorsal tegmental nucleusipsiLDTg0
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg3
Lateral parabrachial nucleusipsiLPB1
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus caudal partipsiDRC0.5
Dorsal raphe nucleus central partipsiDRcep0.5
Dorsal raphe nucleus lateral wingipsiDRlw0.5
Dorsal raphe nucleus rostral partipsiDRr0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Substantia innominataipsiSI0
Lateral hypothalamic area posterior partipsiLHAp1
Arcuate nucleusipsiArc-0.5
Mediodorsal thalamic nucleus central partipsiMDC-0.5
Dorsomedial part of mediodorsal thalamic nucleus central partipsiMDCDM2
Submedius thalamic nucleusipsiSub-0.5
Ventromedial thalamic nucleus caudal partipsiVMc0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt0.5
Reticular thalamic nucleus intermediate partipsiRti-10
Reticular thalamic nucleus rostral partipsiRtr-10
Lateral habenular nucleusipsiLHb1
Accessory basal nucleusipsiAB3
Basolateral amygdaloid nucleusipsiBL0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus lateral division capsular partipsiCeC1
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Cortex amygdala transition zoneipsiCxA-0.5
Anterior amygdaloid areaipsiAA0
Anterior cortical amygdaloid nucleusipsiACo3
Posterior amygdaloid nucleusipsiCOAp-1
Nucleus of the lateral olfactory tractipsiLOT-0.5
Periamygdaloid complexipsiPAC0.5
Medial extended amygdalaipsiMEXA-0.5
Medial amygdaloid nucleusipsiMe-0.5
ClaustrumipsiCl-0.5
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa3
Accumbens nucleusipsiAc0
Lateral nucleus accumbensipsiAcl1
Dorsolateral striatum ventral partipsiCPudlV2
Ventral striatumipsiCPuv-0.5
Tail of the striatumipsiCPuTa-0.5
Subthalamic nucleusipsiSTh2
HippocampusipsiHIPP-1
Dorsal hippocampus dentate gyrusipsiDDG3
Ventral hippocampus dentate gyrusipsiVDG3
SubiculumipsiS-0.5
ParasubiculumipsiPaS-0.5
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt3
Medial entorhinal cortexipsiMEnt2
Piriform cortexipsiPir-0.5
Piriform cortex layer 2ipsiPirL23
Piriform cortex layer 3ipsiPirL33
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL2
Frontal association cortex layer 5ipsiFrALL50
Frontal association cortex layer 6ipsiFrALL60
Insular cortexipsiICX-0.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL3
Perirhinal cortexipsiA353
Ectorhinal cortexipsiA361.5
Postrhinal cortexipsiPOR0.5
Prefrontal cortexipsiPFC3
Lateral agranular prefrontal cortexipsiAGl1
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm1
Primary visual cortex monocular areaipsiV1M3
Lateral orbital cortexipsiLO2
Ventral orbital cortexipsiVO2
Olfactory bulb A16ipsiMOB-0.5
Olfactory tubercleipsiTuO-0.5
Olfactory tubercle lateral partipsiTuOL1
Lateral septal nucleusipsiLS-1
Cervical segment 3ipsiCS31
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Lumbar segment 6ipsiL61
Central graycontraCG1.5
Nuclei of the lateral lemniscuscontraNLL1
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg0
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg2
Lateral parabrachial nucleuscontraLPB0.5
Dorsal raphe nucleuscontraDR1.5
Dorsolateral striatum ventral partcontraCPudlV1
Piriform cortexcontraPir-0.5
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL1

Input from

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN-0.5
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA3
Peripeduncular nucleusipsiPP-1
Retrorubral nucleusipsiRR2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Locus coeruleusipsiLC-1
Pontomesencephalic grayipsiPoMG-0.5
Pontine tegmental fieldipsiPTF-1
Parabrachial nucleusipsiPB-1
Lateral parabrachial nucleus external partipsiLPBE2.5
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Nucleus of the solitary tractipsiSol-0.5
Dorsal raphe nucleusipsiDR-0.5
Dorsal raphe nucleus rostral partipsiDRr3
Median raphe nucleusipsiMnR1
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Basal nucleus MeynertipsiB-0.5
Substantia innominataipsiSI-1
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA-1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic area posterior partipsiLHAp1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Ventromedial hypothalamic nucleusipsiVMH1
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Supramammillar nucleus lateral part lateral subpartipsiSuMLL3
Supramammillar nucleus lateral part medial subpartipsiSuMLM2
Supramammillar nucleus medial partipsiSuMM1
Perifornical nucleusipsiPeF-1
Central medial thalamic nucleusipsiCM-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Rhomboid thalamic nucleusipsiRh2
Posterior thalamic nuclear groupipsiPo-1
Mediodorsal thalamic nucleusipsiMD-0.5
Paratenial thalamic nucleusipsiPT-1
Paraventricular thalamic nucleusipsiPV2
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe2
Ventral anterior-lateral complex of the thalamus dorsolateral partipsiVALDL0
Ventro anterior thalamic nucleusipsiVA-0.5
Ventrobasal complexipsiVB0
Ventromedial thalamic nucleusipsiVM-0.5
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI-0.5
HabenulaipsiHAB-0.5
Cerebral peduncle basal partipsicp-2
Basal nucleus parvicellular partipsiBpc1
Basolateral amygdaloid nucleusipsiBL-0.5
Amygdalopiriform transition areaipsiAPir-1
Posterior amygdaloid nucleusipsiCOAp3
Posterior amygdaloid nucleus medial partipsiCOApm3
Nucleus of the lateral olfactory tractipsiLOT2.5
Periamygdaloid complexipsiPAC-1
Medial amygdaloid nucleusipsiMe-1
Medial amygdaloid nucleus anterodorsal partipsiMeAD2
Medial amygdaloid nucleus posterodorsal partipsiMePD1
Amygdalohippocampal area lateral partipsiAHilp1.5
ClaustrumipsiCl1
Dorsal part of claustrumipsiDCl0.5
Medial globus pallidusipsiMGP3
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa3
Caudate putamenipsiCPu-0.5
Subthalamic nucleusipsiSTh-0.5
Parasubthalamic nucleusipsiPSTh-2
Cerebral cortexipsiCEC-0.5
Field CA1 of hippocampus ventral partipsiCA1v2
SubiculumipsiS3
Lateral entorhinal cortexipsiLEnt3
Piriform cortexipsiPir3
Anterior piriform cortexipsiAPIRC-0.5
Posterior piriform cortexipsiPPIRC-0.5
Anterior cingulate cortexipsiACC2
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd0.5
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL2
Frontal cortex area 2ipsiFr22
Perirhinal cortexipsiA35-0.5
Medial agranular prefrontal cortexipsiAGm2
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO1
Anterior olfactory nucleusipsiAON3
Olfactory tubercleipsiTuO3
Lateral septal nucleusipsiLS-0.5
Ventral tegmental area A10contraVTA2
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Nucleus of the lateral olfactory tract layer 2contraLOTL2-3
Piriform cortexcontraPir1
Anterior cingulate cortexcontraACC2
Frontal cortex area 2contraFr22
Medial agranular prefrontal cortexcontraAGm2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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