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Rat connectome



Substantia nigra A9 dorsal part left


Abbreviation
SND
Color       
Superior regionsSubstantia nigra A9

SynonymsAbbr.Language
Substantia nigra A9 dorsal partSND 
Lateral extend of the parabrachial pigmented nucleus of Paxinos and Watson 2007 Eng

SubregionsSide
Substantia nigra A9 dorsal halfleft
Substantia nigra A9 dorsal edgeleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG2
Central gray lateral partipsiCGL-0.5
Paralemniscal nucleusipsiPL1
Superior colliculus deep layers lateral partipsiSCdLa2
Pedunculopontine tegmental nucleusipsiPPTg1
Locus coeruleusipsiLC-0.5
Reticular systemipsiRF-0.5
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus oral part central partipsiPnOC1
Cuneiforme nucleus caudal partipsiCnFc1
Pontine raphe nucleusipsiPnR-0.5
Ventromedial thalamic nucleus dorsal partipsiVMTd-0.5
Medial coreipsiAcbCm0
Caudate putamenipsiCPu-0.5
Dorsal striatumipsiCPud-0.5
Lateral striatumipsiCPul-0.5
Frontal association cortexipsiFrA-0.5
Suprarhinal regionipsiSRR-0.5
Medial prefrontal cortexipsimPFC-0.5
Intergeniculate leafipsiIGL-0.5
Central graycontraCG2
Superior colliculus deep layers lateral partcontraSCdLa2

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area rostrodorsolateral partipsiVTARDL2.5
Reticular thalamic nucleusipsiRt2
Lateral habenular nucleus central partipsiLHbc3
Lateral habenular nucleus lateral partipsiLHbL3
Globus pallidusipsiGP-0.5
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC-0.5
Accumbens nucleus shellipsiAcbSh-0.5
Caudal striatumipsiCPuc1
Rostral striatumipsiCPur1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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