University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Medial prefrontal cortex left


Abbreviation
mPFC
Color       
Superior regionsMotoric regions

SynonymsAbbr.Language
Prefrontal medial division  
Prefrontal cortex area 32  
Medial prefrontal cortexmPFCEng
Anteromedial prefrontal cortex Eng
Mesial cortex of frontal lobe Eng
Mediofrontal cortex Eng
Medial frontal cortex Eng
Medial prefrontal cortical area Eng
Medial prefrontal region Eng

SubregionsSide
Medial prefrontal cortex dorsal partleft
Medial prefrontal cortex dorsomedial partleft
Medial prefrontal cortex layersleft
Medial prefrontal cortex ventral partleft
Mostventral pregenual part of the medial surface of the anterior neocortexleft
Medial prefrontal cortex posterior partleft
Medial prefrontal cortex dorsoventral partleft
Medial prefrontal cortex rostrocaudal partleft
Medial prefrontal cortex ventrocaudal partleft
Medial prefrontal cortex rostral partleft
Medial prefrontal cortex medial partleft
Medial prefrontal cortex central partleft
Medial prefrontal cortex caudal partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Nuclei of the lateral lemniscusipsiNLL1
Periaqueductal grayipsiPAG3
Dorsolateral periaqueductal grayipsiDLPAG3
Periaqueductal gray caudal partipsiPAGc1.5
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG1
Superior colliculusipsiSC3
Superior colliculus intermediate layersipsiSCi1
Superior colliculus deep layersipsiSCd1.5
Deep gray layer of the superior colliculusipsiDpG1
Central tegmental field dorsal partipsiTGACd0
Peduncularpontine nucleusipsiPPN-0.5
Dorsal peduncular pontine nucleusipsiDPPn3
Ventral midbrain tegmentumipsiVeMT1.5
Substantia nigra A9ipsiSN2
Substantia nigra compact partipsiSNC1
Substantia nigra reticular part medial tieripsiSNRm1
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 middle thirdipsiVTAmit-0.5
Peripeduncular nucleusipsiPP1
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg4
Dorsal tegmental nucleusipsiDTg3
Pedunculopontine tegmental nucleusipsiPPTg1
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd2
PonsipsiP-0.5
Locus coeruleusipsiLC4
Locus coeruleus rostral partipsiLCRo-0.5
Rostromedial pericoerulear regionipsiRMPCR3
Pons caudal partipsiPca2
Lateral nuclear groups of the caudal ponsipsiPcaL3
Pons rostral partipsiPro-0.5
Pontine nuclei rostromedial partipsiBPNrm-0.5
Reticular systemipsiRF3
Magnocellular reticular nucleusipsiNRMC1
Magnocellular reticular nucleus beta partipsiNRMCb2
Ventromedial reticular formationipsiVMRF-1
Nucleus reticularis subcuneiformisipsiRScf2
Pontine reticular nucleusipsiPRN3
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus oral part medial partipsiPnOm3
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleus rostrocaudal extentipsiCnFrc3
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus ventral part medial portionipsiPBVM-1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA3
Medullary reticular nucleus lateral partipsiMdL2
Parvicellular reticular nucleusipsiPCRt0
Pons ventromedialipsiVeMeP-0.5
Rostromedial ponsipsiPRoMe-0.5
Subcoeruleus nucleusipsiSubC3
Subcoeruleus nucleus ventral partipsiSubCV2
Hypoglossal nucleusipsi12S1
Dorsomedial portion of the spinal trigeminal nucleus oral partipsiSp5ODM0
Ventrolateral part of spinal trigeminal nucleus oral partipsiSp5OVL0
Lateral part of lamina 1 of the trigeminal subnucleus caudalisipsi5SSCL1L0
Lateral part of lamina 2 of the trigeminal subnucleus caudalisipsi5SSCL2L0
Trigeminal subnucleus caudalis layers caudal part layer 1ipsi5SSCCaL10
Trigeminal subnucleus caudalis layers caudal part layer 2ipsi5SSCCaL20
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract dorsolateral partipsiSolDL1
Nucleus of the solitary tract dorsomedial partipsiSolDM1
Nucleus of the solitary tract lateral partipsiSolL-1
Nucleus of the solitary tract medial partipsiSolM-0.5
Nucleus of the solitary tract medial part dorsal division lateral portionipsiSolMDL1.5
Nucleus of the solitary tract medial part rostral zoneipsiNTSm-r-1
Nucleus of the solitary tract midrostral partipsiSolmr1
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsal partipsiDRD4
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm3
Dorsal raphe nucleus dorsomedian partipsiDRdmm3
Dorsal raphe nucleus lateral wingipsiDRlw3
Dorsal raphe nucleus median partipsiDRM-0.5
Dorsal raphe nucleus caudal midlineipsiDRcmip3
Dorsal raphe nucleus ventral partipsiDRV3
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme3
Superior central raphe nucleusipsiCS2
Raphe magnus nucleusipsiRMg1
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cellsipsiA12
Paragigantocellular reticular nucleusipsiPGi2
Lateral paragigantocellular nucleusipsiLPGi2
Retrotrapezoid nucleusipsiRTN1
Basal forebrainipsiBAF2
Substantia innominataipsiSI3
Substantia innominata dorsal partipsiSID-0.5
Substantia innominata ventral partipsiSIV-0.5
HypothalamusipsiHYPO-0.5
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH3
Dorsolateral hypothalamusipsiDLH0.5
Lateral hypothalamic area posterior partipsiLHAp3
Dorsomedial hypothalamic nucleus diffuse partipsiDMH3
Ventromedial hypothalamic nucleusipsiVMH-1
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular nucleus medial parvocellular partipsiPaMep0
Medial mammillary nucleusipsiMMn3
Anterolateral regionipsiMMna1
Medial mammillary nucleus lateral partipsiML-0.5
ThalamusipsiT3
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL-0.5
Gelatinosus thalamic nucleusipsiG0.5
Paracentral thalamic nucleusipsiPC-1
Parafascicular thalamic nucleusipsiPF3
Rhomboid thalamic nucleusipsiRh0.5
Mediodorsal thalamic nucleusipsiMD1
Mediodorsal thalamic nucleus caudal partipsiMDCa3
Mediodorsal thalamic nucleus central partipsiMDC3
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus laterodorsal partipsiMDLld3
Mediodorsal thalamic nucleus medial partipsiMDM3
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV-0.5
Reuniens thalamic nucleusipsiRe3
Ventromedial thalamic nucleus lateral partipsiVML-0.5
Posterior intralaminar thalamic nucleusipsiPIL1
Lateral thalamic nuclear groupipsiLTNG3
Laterodorsal thalamic nucleusipsiLD-0.5
Posterior groupipsiPTG3
Ventral thalamusipsiVNT-2
Reticular thalamic nucleus prosomere 1ipsip1RT3
Ventral medial nucleus of the thalamusipsiVMT3
Zona incertaipsiZI2
Lateral habenular nucleusipsiLHb3
Lateral habenular nucleus medial partipsiLHbM3
Internal capsuleipsiic-2
Cerebral peduncle basal partipsicp-2
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL3
Anterior basolateral nucleusipsiBLA-0.5
Basolateral amygdaloid nucleus ventral partipsiBLve-0.5
Basolateral nucleus dorsomedial partipsiBLdM-0.5
Basolateral nucleus medial portionipsiBLmp1
Posterior basolateral nucleusipsiBLP0
Ventral basolateral nucleusipsiBLV1
Basomedial amygdaloid nucleusipsiBM-0.5
Posterior basomedial nucleusipsiBMP-0.5
Posterior basomedial nucleus caudal partipsiBMPc-0.5
Lateral amygdaloid nucleusipsiLA2
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD-0.5
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM-0.5
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV-0.5
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL1.5
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM1.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd0.5
Bed nucleus of the stria terminalis ventral partipsiBNSTv3
Central amygdaloid nucleusipsiCe3
Capsule like area surrounding central amygdaloid nucleusipsiCec-1
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM1
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC-0.5
Sublenticular extended amygdalaipsiSLEA-0.5
Posterolateral cortical nucleusipsiPLCo1
Medial amygdaloid nucleusipsiMe0
Intercalated nuclei of the amygdalaipsiI-1
ClaustrumipsiCl1
Rostral part of claustrumipsiRCl1
StriatumipsiSTR3
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus core dorsolateral partipsiAcbCdl3
Accumbens nucleus rostral partipsiAcR-0.5
Accumbens nucleus shellipsiAcbSh3
Midrostrocaudal level of the accumbens nucleus shellipsiAcbShmrc1
Central accumbensipsiAcbCe2
Dorsolateral accumbensipsiAcbDL-0.5
Lateral nucleus accumbensipsiAcl2
Medial accumbensipsiAcbM2
Caudate putamenipsiCPu2
Caudate putamen anteromedianipsiCPuame2
Dorsomedial striatumipsiCPudm2
Medial striatumipsiCPum2
Central striatumipsiCPuce-0.5
Dorsolateral striatumipsiCPudl1
Rostral striatumipsiCPur3
Rostromedial striatumipsiCPurm-0.5
Rostral striatum medial partipsiCPurme-0.5
Ventral striatumipsiCPuv-0.5
Ventromedial striatum rostral partipsiCPuvmr2
Lateral striatumipsiCPul3
Tail of the striatumipsiCPuTa-0.5
Fundus of the striatumipsiFS2
Fundus of the striatum rostral partipsiFSr1
Subthalamic nucleusipsiSTh3
Parasubthalamic nucleusipsiPSTh2
Subthalamic nucleus central partipsiSThCe1
Subthalamic nucleus middle partipsiSThm1
HippocampusipsiHIPP0
Dorsal hippocampus dentate gyrusipsiDDG3
Ventral hippocampus dentate gyrusipsiVDG3
Field CA1 of hippocampusipsiCA1-0.5
SubiculumipsiS-0.5
Entorhinal cortexipsiEnt-0.5
Retrosplenial regionsipsiRS2
Anterior cingulate cortexipsiACC0
Prelimbic cortexipsiPrL-2
Infralimbic cortexipsiIL-0.5
Infralimbic cortex dorsal partipsiILD-2
Parietal association cortexipsiPtA3
Temporal association area 3ipsiTe3-0.5
Agranular insular cortex anterior partipsiAIA2
Agranular insular cortex caudal partipsiAIC1
Agranular insular cortex intermediate partipsiAIim2
Agranular insular cortex rostral partipsiRAIC2
Caudal half of the posterior agranular insular cortexipsiAIChP2
Dysgranular insular cortex ventral partipsiDIve2
Border region of the agranular and granular insular cortex ventral partipsiAGbGICXv2
Perirhinal cortexipsiA353
Ectorhinal cortexipsiA362
Postrhinal cortexipsiPOR-0.5
Prefrontal cortexipsiPFC1
Secondary somatosensory cortexipsiS21
Commissural systemsipsicos0.5
Nucleus of the posterior commissureipsiPCom-0.5
Olfactory bulb A16ipsiMOB3
Olfactory tubercleipsiTuO2
Olfactory tubercle polymorph layeripsiTuOpo-1
Lumbar segment 4ipsiL4-0.5
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Nuclei of the lateral lemniscuscontraNLL0.5
Central tegmental field dorsal partcontraTGACd0
Dorsal peduncular pontine nucleuscontraDPPn1
Ventral tegmental area A10contraVTA1
Ventral tegmental area A10 middle thirdcontraVTAmit-0.5
Laterodorsal tegmental nucleuscontraLDTg2
Ventral tegmental nucleuscontraVTg2
Dorsal tegmental nucleuscontraDTg1.5
Pedunculopontine tegmental nucleuscontraPPTg1
Pedunculopontine tegmental nucleus pars dissipatacontraPPNd1
PonscontraP-0.5
Locus coeruleuscontraLC2
Pons caudal partcontraPca2
Lateral nuclear groups of the caudal ponscontraPcaL3
Pons rostral partcontraPro-0.5
Magnocellular reticular nucleus beta partcontraNRMCb2
Nucleus reticularis subcuneiformiscontraRScf1
Pontine reticular nucleus oral partcontraPnO1
Pontine reticular nucleus oral part medial partcontraPnOm2
Pontine reticular nucleus caudal partcontraPNC1
Cuneiforme nucleus rostrocaudal extentcontraCnFrc2
Lateral parabrachial nucleuscontraLPB0.5
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus alpha partcontraGiA3
Medullary reticular nucleus lateral partcontraMdL3
Parvicellular reticular nucleuscontraPCRt0
Pons ventromedialcontraVeMeP-0.5
Rostromedial ponscontraPRoMe-0.5
Dorsomedial portion of the spinal trigeminal nucleus oral partcontraSp5ODM0
Ventrolateral part of spinal trigeminal nucleus oral partcontraSp5OVL0
Lateral part of lamina 1 of the trigeminal subnucleus caudaliscontra5SSCL1L0
Lateral part of lamina 2 of the trigeminal subnucleus caudaliscontra5SSCL2L0
Trigeminal subnucleus caudalis layers caudal part layer 1contra5SSCCaL10
Trigeminal subnucleus caudalis layers caudal part layer 2contra5SSCCaL20
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleuscontraDR3
Dorsal raphe nucleus lateral wingcontraDRlw-0.5
Dorsal raphe nucleus ventromedial subdivisioncontraDRvme-0.5
Rostral ventrolateral medullacontraRVLM0.5
A1 noradrenergic cellscontraA13
Paragigantocellular reticular nucleuscontraPGi2
Lateral paragigantocellular nucleuscontraLPGi2
Lateral zonecontraLHA-0.5
Lateral hypothalamic areacontraLH0.5
Anterolateral regioncontraMMna3
Mediodorsal thalamic nucleus caudal partcontraMDCa1
Mediodorsal thalamic nucleus central partcontraMDC1
Mediodorsal thalamic nucleus lateral partcontraMDL1
Mediodorsal thalamic nucleus medial partcontraMDM1
Ventromedial thalamic nucleus lateral partcontraVML-0.5
Reticular thalamic nucleus prosomere 1contrap1RT3
Lateral habenular nucleus medial partcontraLHbM1
Corpus callosumcontracc-2
Basolateral amygdaloid nucleuscontraBL-0.5
Basolateral nucleus medial portioncontraBLmp1
Posterior basolateral nucleuscontraBLP0
Bed nucleus of the stria terminalis ventral partcontraBNSTv1
Accumbens nucleuscontraAc-0.5
Accumbens nucleus corecontraAcbC1
Accumbens nucleus shellcontraAcbSh1
Lateral nucleus accumbenscontraAcl1
Caudate putamencontraCPu2
Caudate putamen anteromediancontraCPuame1
Dorsomedial striatumcontraCPudm1
Medial striatumcontraCPum1
Dorsolateral striatumcontraCPudl0.5
Rostral striatumcontraCPur1
Retrosplenial regionscontraRS3
Retrosplenial cortexcontraRSCx-0.5
Anterior cingulate cortexcontraACC0
Prelimbic cortexcontraPrL-2
Infralimbic cortex dorsal partcontraILD-2
Parietal association cortexcontraPtA-0.5
Agranular insular cortexcontraAI3
Caudal half of the posterior agranular insular cortexcontraAIChP0.5
Dysgranular insular cortexcontraDI1
Granular insular cortexcontraGI1
Border region of the agranular and granular insular cortex ventral partcontraAGbGICXv1
Perirhinal cortexcontraA353
Prefrontal cortexcontraPFC1
Lateral prefrontal cortexcontralPFC-0.5
Medial prefrontal cortexcontramPFC3
Medial prefrontal cortex layer 5contramPFCL53
Medial prefrontal cortex layer 6contramPFCL63
Medial prefrontal cortex layer 3contramPFCL33
Medial prefrontal cortex layer 4contramPFCL43
Secondary somatosensory cortexcontraS20.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Ventral stomach wallipsiOrgsStomVWS-0.5
Ventral stomach wallcontraOrgsStomVWS-0.5
KidneycontraOrgsKid0.5

Input from

NameSideAbbr.WeightDetails
Central grey periaqueductalipsiCGPAG-0.5
Oculomotor nucleusipsi32
Periaqueductal grayipsiPAG2
Periaqueductal gray close to ependymaipsiPAGcEp-0.5
Ventral periaqueductal grayipsiVPAG1
Red nucleusipsiR2
Substantia nigra A9ipsiSN-0.5
Substantia nigra A9 dorsal partipsiSND-0.5
Substantia nigra compact partipsiSNC3
Substantia nigra compact part medial tieripsiSNCM1
Substantia nigra lateral partipsiSNL1
Substantia nigra medial partipsiSNM1
Substantia nigra reticular partipsiSNR1
Medial middle substantia nigraipsiSNmm-0.5
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp2
Interfascicular nucleusipsiIF1
Ventral tegmental area A10 medial partipsiVTAM2.5
Ventral tegmental area A10 parabrachial divisionipsiVTApb-0.5
Ventral tegmental area A10 paranigral divisionipsiVTApn1
Ventral tegmental area rostral partipsiVTAR4
Ventral tegmental area anterior partipsiVTAA-0.5
Paranigral nucleusipsiPN3
Caudal linear nucleus of the rapheipsiCLi3
Retrorubral nucleusipsiRR1
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleus central partipsiVTgC2.5
Dorsal tegmental nucleusipsiDTg0.5
Pedunculopontine tegmental nucleusipsiPPTg2
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca3
Locus coeruleus coreipsiLCco2
Locus coeruleus posterior partipsiLCp3
Locus coeruleus rostral partipsiLCRo3
Nucleus incertus pars compactaipsiNIc2
Nucleus incertus pars dissipataipsiNId1
Pons rostral partipsiPro3
Region surrounding the reticular formationipsiSRF3
Reticular systemipsiRF1
Ventromedial reticular formationipsiVMRF1
Mesencephalic reticular formationipsiMRF1
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleus dorsal partipsiLPBD-1
Raphe nucleiipsiRAN1
Caudal raphe nucleiipsiRANc3
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus central partipsiDRcep3
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm-0.5
Central part of the dorsomedial zone of the dorsal raphe nucleusipsiDRdmCe3
Dorsal raphe nucleus main partipsiDRmain-0.5
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus rostral tipipsiDRrt-0.5
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme-0.5
Rostral linear nucleus of the rapheipsiRLi-0.5
Median raphe nucleusipsiMnR3
Medial raphe nucleusipsiMeR-0.5
Pontine raphe nucleusipsiPnR0.5
Dorsal medulla oblongataipsiDMe0
Basal forebrainipsiBAF0.5
Endopiriform systemipsiEnN3
Dorsal endopiriform nucleusipsiDEn3
Ventral endopiriform nucleusipsiVEn1
Magnocellular basal forebrain neuronal complexipsiMBFNC-0.5
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial septal nucleusipsiMS2
Basal nucleus MeynertipsiB-0.5
Basal nucleus Meynert caudal partipsiBca1.5
Basal nucleus Meynert caudal endipsiBcaE0
Central zone of the nucleus basalisipsiBcez1.5
Substantia innominataipsiSI2
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO-0.5
Medial preoptic nucleusipsiMPO0.5
Ventrolateral preoptic nucleusipsiVLPO1
Tenia tectaipsiTT1
Dorsal tenia tectaipsiDTT-0.5
Tuberomammillary nucleusipsiTuM0
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx2
Peduncular part of lateral hypothalamusipsiPLH1
Tuberal nucleusipsiTU0
Ventrolateral hypothalamic nucleusipsiVLH1
Anterior hypothalamic areaipsiAHA0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleusipsiVMH0.5
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM0.5
Periventricular zoneipsiPVZ1
Arcuate nucleusipsiArc0
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus [Supraoptic region]ipsiSO1
Medial mammillary nucleus lateral partipsiML0
Medial mammillary nucleus medial partipsiMM0
Premammillary nucleus ventral partipsiPMV0.5
Supramammillar nucleusipsiSuM2
Perifornical nucleusipsiPeF2
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleusipsiAM3
Interanteromedial thalamic nucleusipsiAiM-0.5
Anteroventral thalamic nucleusipsiAV0
Interoanteromedial thalamic nucleusipsiIAM2
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus caudal partipsiCMca0.5
Central medial thalamic nucleus rostral partipsiCMr1.5
Centrolateral thalamic nucleusipsiCL3
Gelatinosus thalamic nucleusipsiG2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF0
Parafascicular thalamic nucleus medial partipsiPFM4
Rhomboid thalamic nucleusipsiRh2
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus dorsal partipsiMDD3
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus medial partipsiMDM0.5
Mediodorsal thalamic nucleus middle partipsiMDmi-0.5
Submedius thalamic nucleusipsiSub0
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV2
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus posterior partipsiPVP0.5
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus anterior partipsiReAn0.5
Reuniens thalamic nucleus lateral partipsiReL0.5
Reuniens thalamic nucleus medial partipsiReMe-0.5
Reuniens thalamic nucleus rostrocaudal level 1ipsiRercL1-0.5
Reuniens thalamic nucleus rostrocaudal level 2ipsiRercL2-0.5
Reuniens thalamic nucleus rostrocaudal level 3ipsiRercL3-0.5
Reuniens thalamic nucleus rostrocaudal level 4ipsiRercL4-0.5
Reuniens thalamic nucleus rostrocaudal level 5ipsiRercL5-0.5
Reuniens thalamic nucleus rostrocaudal level 6ipsiRercL6-0.5
Ventral anterior-lateral complex of the thalamusipsiVAL0
Ventrolateral thalamic nucleusipsiVL2
Ventral posterolateral thalamic nucleusipsiVPL0
Ventral posteromedial thalamic nucleusipsiVPM0
Ventral posteromedial thalamic nucleus parvicellular partipsiVPMpc0
Ventromedial thalamic nucleusipsiVM2
Intralaminar nucleiipsiILN-0.5
Lateral posterior thalamic nucleusipsiLP0
Laterodorsal thalamic nucleusipsiLD0
Posteromedial thalamic nucleusipsiPMTN1
Posteroventral thalamic nucleusipsiPVTN-0.5
Reticular thalamic nucleusipsiRt2
Ventral medial nucleus of the thalamusipsiVMT1
Zona incertaipsiZI3
Tuber cinereum areaipsiTC0.5
Corpus callosumipsicc-2
Dorsal bank of rhinal fissureipsiDBrf-1
Ventral bank of the rhinal fissureipsiVBrf-1
Medial terminal nucleus of the accessory optic tractipsiMT0.5
Amygdaloid complexipsiAC1
Basal nucleusipsiBnc1.5
Basal nucleus rostral partipsiBncR1.5
Basolateral amygdaloid nucleusipsiBL3
Anterior basolateral nucleusipsiBLA3
Anterior basolateral nucleus caudomedial partipsiBLAcm3
Anterior basolateral nucleus medial partipsiBLAM3
Dorsal portion of the anterior basolateral nucleusipsiBLAD3
Basolateral nucleus lateral partipsiBLLP3
Basolateral nucleus medial portionipsiBLmp2
Basolateral nucleus medial portion anterior partipsiBLmpa4
Posterior basolateral nucleusipsiBLP3
Posterior basolateral nucleus medial partipsiBLPMP4
Ventral basolateral nucleusipsiBLV2
Basomedial amygdaloid nucleusipsiBM3
Anterior basomedial nucleusipsiBMA-0.5
Posterior basomedial nucleusipsiBMP-0.5
Lateral amygdaloid nucleusipsiLA2
Dorsolateral part of the lateral nucleusipsiLaDL0.5
Lateral nucleus dorsal partipsiLAd2
Ventromedial subdivision of the rostral part of the lateral amygdaloid nucleusipsiLARvm2
Lateral nucleus ventral portionipsiLAVp3
Ventrolateral part of the lateral nucleusipsiLaVL-0.5
Ventromedial part of the lateral nucleusipsiLaVM-0.5
Extended amygdalaipsiEXA1
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM1
Central amygdaloid nucleusipsiCe1
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC1
Amygdalopiriform transition areaipsiAPir-0.5
Anterior amygdaloid areaipsiAA1
Cortical amygdaloid nucleusipsiCAn1
Anterior cortical amygdaloid nucleusipsiACo0.5
Posterior amygdaloid nucleusipsiCOAp-1
Posterolateral cortical nucleusipsiPLCo-0.5
Nucleus of the lateral olfactory tractipsiLOT2
Nucleus of the lateral olfactory tract layer 2ipsiLOTL2-0.5
Nucleus of the lateral olfactory tract layer 3ipsiLOTL31
Caudal periamygdaloid nucleusipsiPACC3
Periamygdaloid cortex layer 2ipsiPACL21.5
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus anterodorsal partipsiMeAD2
Amygdalohippocampal areaipsiAHi2
Amygdalohippocampal area anterolateral partipsiAHiAL-0.5
Amygdalohippocampal area lateral partipsiAHilp0
Amygdalohippocampal area posteromedial partipsiAHiPM-0.5
Posteromedial cortical nucleusipsiPMCo-0.5
ClaustrumipsiCl3
Medial part of claustrumipsiMCl1
Globus pallidusipsiGP2
Dorsal globus pallidusipsiDGP-0.5
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc0.5
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus shellipsiAcbSh1
Lateral nucleus accumbensipsiAcl2
Caudate putamenipsiCPu1
Subthalamic nucleusipsiSTh2
Parasubthalamic nucleusipsiPSTh2.5
HippocampusipsiHIPP3
Dorsal hippocampusipsiHIPPd0
Hippocampal most septal partipsiHIPPms0
Hippocampal temporalipsiHIPPt-0.5
Hippocampus intermediate partipsiHIPPip-0.5
Dentate gyrusipsiDG1
Field CA1 of hippocampusipsiCA12
Field CA1 of hippocampus caudal partipsiCA1ca-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad1
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr2
Field CA1 of hippocampus layer stratum pyramidale deepipsiCA1L3spd-0.5
Field CA1 of hippocampus layer stratum pyramidale superficialipsiCA1L3sps-0.5
Field CA1 of hippocampus temporal partipsiCA1t-0.5
Field CA1 of hippocampus ventral partipsiCA1v-0.5
Field CA2 of hippocampusipsiCA21
Field CA2 of hippocampus layer stratum radiatumipsiCA2rad-0.5
Field CA2 of hippocampus layer stratum pyramidale deep partipsiCA2L3dsp-0.5
Field CA2 of hippocampus layer stratum pyramidale superficial partipsiCA2L3ssp-0.5
Temporal part of field CA2 of hippocampusipsiTCA2-0.5
Field CA3 of hippocampusipsiCA31
Field CA4 of hippocampusipsiCA40
SubiculumipsiS-0.5
Intermediate subiculumipsiInSu-0.5
Dorsal prosubiculumipsiProSD-0.5
Ventral prosubiculumipsiProSV-0.5
Subiculum caudal partipsiScap-0.5
Subiculum dorsal part molecular layeripsiSdapmL-0.5
Subiculum proximal partipsiSpx1
Subiculum ventral partipsiSv-3
Subiculum ventral part molecular layeripsiSvML-0.5
Septohippocampal nucleusipsiSHi1
Subicular cortex border to CA1ipsiHIPPbCA1-0.5
Ventral hippocampusipsiHIPPv-0.5
Entorhinal cortexipsiEnt1
Entorhinal cortex ventral areaipsiEntV-0.5
Lateral entorhinal cortexipsiLEnt3
Ventrolateral entorhinal cortexipsiVLENT-0.5
Ventrolateral entorhinal cortex layersipsiVLENTL-0.5
Piriform cortexipsiPir3
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC2
Prelimbic cortexipsiPrL2
Prelimbic cortex rostrocaudal extentipsiPrLrc3
Infralimbic cortexipsiIL1
Ventrally adjacent infralimbic areaipsiVaILa3
Insular cortexipsiICX-0.5
Agranular insular cortexipsiAI2
Agranular insular cortex anterior partipsiAIA2
Agranular insular cortex caudal partipsiAIC1
Agranular insular cortex intermediate partipsiAIim2
Agranular insular cortex rostral partipsiRAIC2
Agranular insular cortex posterior partipsiAIP-0.5
Dysgranular insular cortex ventral partipsiDIve2
Rostralmost level of the dysgranular insular cortexipsiRDIrm1
Rostrocaudal middle level of the dysgranular insular cortexipsiDIrcm1
Lateral granular insular cortexipsiLGI-0.5
Rostralmost level of the granular insular cortexipsiRGIrm1
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs20
Rostrocaudal middle level of the granular insular cortexipsiGIrcm1
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA36-0.5
Postrhinal cortex layer 4ipsiPORL40.5
Postrhinal cortex layer 5ipsiPORL50.5
Postrhinal cortex layer 6ipsiPORL60.5
Dorsal peduncular cortexipsiDP1
Lateral agranular prefrontal cortex layer 3ipsiAGlL32
Lateral agranular prefrontal cortex layer 5ipsiAGlL52
Lateral agranular prefrontal cortex layer 6bipsiAGlL6b3
Medial agranular prefrontal cortexipsiAGm1
Dorsolateral part of the primary somatosensory cortexipsiS1DL0
Secondary visual cortexipsiV2-0.5
Orbital cortexipsiOrC2
Orbitomedial prefrontal cortexipsiOMPFC1
Lateral orbitofrontal cortexipsiLOFC1
Ventral orbitofrontal cortexipsiVOFC1
Ventral lateral geniculate nucleusipsiVLG0
Interpeduncular nucleusipsiIP1
Anterior olfactory nucleusipsiAON1
Olfactory tubercleipsiTuO1
Septal regionipsiSER1
Lateral septal nucleusipsiLS2
Lateral septal nucleus anterior partipsiLSa-0.5
Septofimbrial nucleusipsiSFi1
Triangular septal nucleusipsiTS1
Dorsal root ganglion C2ipsiDRGC2-0.5
Substantia nigra compact partcontraSNC0.5
Ventral tegmental area A10contraVTA0.5
Laterodorsal tegmental nucleuscontraLDTg2
Locus coeruleuscontraLC1
Locus coeruleus posterior partcontraLCp1
Dorsal raphe nucleuscontraDR1
Median raphe nucleuscontraMnR0.5
Ventral endopiriform nucleuscontraVEn-0.5
Diagonal band of BrocacontraDBB-0.5
Medial septal nucleuscontraMS-0.5
Basal nucleus MeynertcontraB-0.5
Magnocellular preoptic nucleuscontraMCPO-0.5
Lateral hypothalamic areacontraLH1
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM0.5
Central medial thalamic nucleuscontraCM2
Centrolateral thalamic nucleuscontraCL-0.5
Rhomboid thalamic nucleuscontraRh2
Intermediodorsal thalamic nucleuscontraIMD2
Paraventricular thalamic nucleuscontraPV2
Reuniens thalamic nucleuscontraRe2
Lateral posterior thalamic nucleuscontraLP-0.5
Reticular thalamic nucleuscontraRt2
Dorsal bank of rhinal fissurecontraDBrf2
Basolateral amygdaloid nucleuscontraBL1
Anterior basolateral nucleuscontraBLA1
Anterior basolateral nucleus medial partcontraBLAM1
Anterior basolateral nucleus ventral partcontraBLAVP-0.5
Basolateral nucleus medial portion anterior partcontraBLmpa-0.5
Posterior basolateral nucleuscontraBLP0.5
Basomedial amygdaloid nucleuscontraBM1
Nucleus of the lateral olfactory tractcontraLOT1
Lateral nucleus accumbenscontraAcl1
HippocampuscontraHIPP0
Field CA1 of hippocampus ventral partcontraCA1v0
Ventral hippocampuscontraHIPPv0
Retrosplenial regionscontraRS3
Anterior cingulate cortexcontraACC1
Cingulate cortex area 1 dorsal partcontraCg1D3
Cingulate cortex area 3 dorsal partcontraCg3D-0.5
Prelimbic cortexcontraPrL1
Infralimbic cortex caudal partcontraILCa3
Agranular insular cortexcontraAI3
Agranular insular cortex posterior partcontraAIP-0.5
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs20
Perirhinal cortexcontraA353
Perirhinal cortex ventral portioncontraPRhv-0.5
Lateral prefrontal cortexcontralPFC-0.5
Medial prefrontal cortexcontramPFC3
Medial prefrontal cortex layer 5contramPFCL53
Medial prefrontal cortex layer 5 type 2 pyramidal cellcontramPFCL5t2-0.5
Medial prefrontal cortex layer 6contramPFCL63
Medial prefrontal cortex layer 3contramPFCL33
Medial prefrontal cortex layer 2contramPFCL23
Medial agranular prefrontal cortexcontraAGm0.5
Dorsolateral part of the primary somatosensory cortexcontraS1DL0
Medial orbital cortexcontraMO3
Ventral orbital cortexcontraVO3
Lateral part of ventrolateral orbital areacontraLVLO3
Vagus nerveipsiAutoV-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications