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Rat connectome



Paralemniscal nucleus left


Abbreviation
PL
Color       
Superior regionsLemniscal nuclei

SynonymsAbbr.Language
Nucleus paralemniscus Eng
Paralemniscal region  
Paralemniscal zone  
Nucleus paralemniscalis Lat
Paralemniscal tegmental field Eng
Paralemniscal nucleusPLEng
Paralemniscal cluster  
Paralemniscal area Eng

SubregionsSide
Lateral paralemniscal nucleusleft
Medial paralemniscal nucleusleft
Rostral paralemniscal nucleusleft
Paralemniscal nucleus caudal partleft

Output to

NameSideAbbr.WeightDetails
Intermediate nucleus of the lateral lemniscusipsiILL1
Paralemniscal nucleusipsiPL2
Periaqueductal grayipsiPAG1
Superior colliculusipsiSC-0.5
Intermediate gray layer of the superior colliculusipsiInG2
Ventrolateral tegmental areaipsiVLTg2
Nucleus incertus pars compactaipsiNIc-3
Reticular systemipsiRF0
Pontine reticular nucleus caudal partipsiPNC-1
Gigantocellular reticular nucleusipsiGi-0.5
Facial nucleusipsi71
Facial nucleus lateral subnucleusipsi7L3
Hypoglossal nucleusipsi12S0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Retrofacial paragigantocellular reticular nucleusipsiRPGi1
Juxtafacial paragigantocellular reticular nucleusipsiJPGi3
Retrotrapezoid nucleusipsiRTN1
Rostral ventral respiratory groupipsiRVRG2
Tuberomammillary nucleusipsiTuM3
Medial division of the hypothalamusipsiMdH2
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP1
Arcuate nucleusipsiArc1
Lateral mammillary nucleusipsiLM2
Supramammillar nucleusipsiSuM3
ThalamusipsiT-0.5
Anteromedial thalamic nucleusipsiAM2
Anteroventral thalamic nucleusipsiAV2
Interoanteromedial thalamic nucleusipsiIAM2
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL0
Paracentral thalamic nucleus caudal partipsiPC-c0
Paracentral thalamic nucleus rostral partipsiPC-r0
Parafascicular thalamic nucleus lateral partipsiPFL0
Parafascicular thalamic nucleus medial partipsiPFM1
Rhomboid thalamic nucleusipsiRh0
Mediodorsal thalamic nucleusipsiMD-1
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus medial partipsiMDM3
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe1
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventromedial thalamic nucleus caudal partipsiVMc0
Laterodorsal thalamic nucleusipsiLD1
Oval paracentral thalamic nucleusipsiOPC0
EpithalamusipsiEPIT3
Field CA1 of hippocampus stratum lacunosum-moleculare superficial partipsiCA1sLM1
PresubiculumipsiPrS1
Lateral entorhinal cortexipsiLEnt2
Retrosplenial regionsipsiRS2
Anterior cingulate cortexipsiACC3
Dorsal anterior cingulate cortexipsiDACC2
Ventral anterior cingulate cortexipsiVACC2
Infralimbic cortexipsiIL2
Perirhinal cortexipsiA352
Dorsal peduncular cortexipsiDP-1
Motoric regionsipsiM2
Medial agranular prefrontal cortexipsiAGm0
Dorsal horn of spinal cordipsiDHMES-0.5
Gray matter of spinal cordipsiGMES0.5
Cervical segmentsipsiCSeg0.5
Cervical segment 1ipsiCS11
Cervical segment 2ipsiCS21
Phrenic motoneurons of lamina 9 C3ipsiPh9C31
Phrenic motoneurons of lamina 9 C4ipsiPh9C41
Phrenic motoneurons of lamina 9 C5ipsiPh9C51
Cervical segment 7ipsiCS7-1
Intermediate gray layer of the superior colliculuscontraInG3
Ventrolateral tegmental areacontraVLTg2
Facial nucleuscontra73
Facial nucleus lateral subnucleuscontra7L2
Facial nucleus medial partcontra7M1
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi4
Juxtafacial paragigantocellular reticular nucleuscontraJPGi-0.5
Rostral ventral respiratory groupcontraRVRG1
Arcuate nucleuscontraArc1
Dorsolateral funiculuscontradlft-2
Cervical segmentscontraCSeg3
Cervical segment 1contraCS13
Dorsal horn C1contraDHC1-0.5
Cervical segment 2contraCS23
Dorsal horn C2contraDHC2-0.5
Dorsal horn C3contraDHC3-0.5
Phrenic motoneurons of lamina 9 C3contraPh9C30
Dorsal horn C4contraDHC4-0.5
Phrenic motoneurons of lamina 9 C4contraPh9C40
Dorsal horn C5contraDHC5-0.5
Phrenic motoneurons of lamina 9 C5contraPh9C50
Dorsal horn C6contraDHC6-0.5
Cervical segment 7contraCS7-1
Dorsal horn C7contraDHC7-0.5
Dorsal horn C8contraDHC8-0.5
Thoracal segmentscontraTSeg-0.5
Dorsal horn T1contraDHT1-0.5
Dorsal horn T2contraDHT2-0.5
Dorsal horn T3contraDHT3-0.5
Dorsal horn T4contraDHT4-0.5
Dorsal horn T5contraDHT5-0.5
Dorsal horn T6contraDHT6-0.5
Dorsal horn T7contraDHT7-0.5
Dorsal horn T8contraDHT8-0.5
Dorsal horn T9contraDHT9-0.5
Dorsal horn T10contraDHT10-0.5
Dorsal horn T11contraDHT11-0.5
Dorsal horn T12contraDHT12-0.5
Dorsal horn T13contraDHT13-0.5
Lumbar segmentscontraLSeg3
Dorsal horn L1contraDHL1-0.5
Dorsal horn L2contraDHL2-0.5
Dorsal horn L3contraDHL3-0.5
Dorsal horn L4contraDHL4-0.5
Dorsal horn L5contraDHL5-0.5
Dorsal horn L6contraDHL6-0.5
Sacral segmentscontraSSeg-0.5
Dorsal horn S1contraDHS1-0.5
Dorsal horn S2contraDHS2-0.5
Dorsal horn S3contraDHS3-0.5
Dorsal horn S4contraDHS4-0.5
Dorsal horn Co1contraDHCo1-0.5
Dorsal horn Co2contraDHCo2-0.5
Dorsal horn Co3contraDHCo3-0.5
Sciatic nerveipsisci1

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL2
Periaqueductal grayipsiPAG0
Dorsal periaqueductal gray caudal partipsiDPAGC1
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0.5
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Substantia nigra A9ipsiSN2.5
Substantia nigra A9 dorsal partipsiSND1
Caudal one third of the substantia nigraipsiSNcot1.5
Caudalmost levels of the substantia nigraipsiSNcm0
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part lateral tieripsiSNCL0.5
Substantia nigra compact part mediolateral tieripsiSNCML1.5
Substantia nigra reticular partipsiSNR1
Substantia nigra reticular part lateral tieripsiSNRL-0.5
Substantia nigra reticular part medial tieripsiSNRm1
Substantia nigra reticular part ventral subdivisionipsiSNRv1
Ventral tegmental area A10ipsiVTA-0.5
Ventrolateral tegmental areaipsiVLTg1
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Supramammillar nucleusipsiSuM1
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleusipsiAM2
Anteroventral thalamic nucleusipsiAV0
Mediodorsal thalamic nucleusipsiMD2
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus central partipsiMDC2
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus medial partipsiMDM3
Paraventricular thalamic nucleusipsiPV3
Laterodorsal thalamic nucleusipsiLD2
EpithalamusipsiEPIT3
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA13
Field CA3 of hippocampusipsiCA30
SubiculumipsiS3
Subiculum dorsal partipsiSd3
Subiculum ventral partipsiSv3
Entorhinal cortexipsiEnt1
Retrosplenial regionsipsiRS0
Ventral anterior cingulate cortexipsiVACC-1
Infralimbic cortexipsiIL2
Temporal association cortex 1ipsiTeA1
Perirhinal cortexipsiA352
Dorsal peduncular cortexipsiDP2
Primary visual cortexipsiV10
Medial extrastriate cortexipsiVISM0
Medial orbital cortexipsiMO2
Periaqueductal graycontraPAG1
Dorsal periaqueductal gray caudal partcontraDPAGC0.5
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0.5
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0.5
Ventrolateral periaqueductal gray caudal partcontraPAGvlc1
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Ventrolateral tegmental areacontraVLTg1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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