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Rat connectome



Substantia nigra A9 left


Abbreviation
SN
Color       
Superior regionsDopaminergic nuclear complex

SynonymsAbbr.Language
A9  
Substantia nigraSNEng
Substantia nigra A9SNEng
Mesencephalic substantia nigra Eng
Substantia nigra  

SubregionsSide
Area surrounding the substantia nigra A9left
Middle portion of the substantia nigraleft
Nigrostriatal bundleleft
Substantia nigra A9 anterior partleft
Substantia nigra A9 central partleft
Substantia nigra A9 dorsal partleft
Substantia nigra A9 dorsocaudal partleft
Substantia nigra A9 dorsolateral partleft
Substantia nigra A9 posterior partleft
Substantia nigra A9 ventrolateral borderleft
Substantia nigra caudal partleft
Substantia nigra caudolateral partleft
Substantia nigra compact partleft
Substantia nigra lateral partleft
Substantia nigra medial partleft
Substantia nigra reticular compacta border regionleft
Substantia nigra reticular partleft
Substantia nigra rostral partleft
Substantia nigra rostrocaudal partleft
Substantia nigra ventral partleft
Substantia nigra ventromedial partleft
Substantia nigra A9 dorsomedial partleft
Substantia nigra A9 GABAergic cellsleft
Substantia nigra A9 rostromedial partleft
Rostral medial border of the substantia nigra A9left
Substantia nigra pars suboculomotorialeft
Substantia nigra intermediate partleft
Middle substantia nigraleft
Substantia nigra caudal dorsal partleft
Median substantia nigra A9left

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG-1
Paralemniscal nucleusipsiPL2.5
Dorsal terminal nucleus of the accessory optic tractipsiDT3
Periaqueductal grayipsiPAG-0.5
Dorsolateral periaqueductal grayipsiDLPAG1
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR1
Red nucleus ventral partipsiRV-0.5
Inferior colliculusipsiICOL-0.5
Ventral division of the caudal inferior colliculusipsiICOLCV-0.5
Central nucleus of the inferior colliculusipsiCIC-0.5
Rostrocaudal extent of the inferior colliculusipsiRCeICOL-0.5
Superior colliculusipsiSC3
Superior colliculus superficial layersipsiSCs-3
Optic nerve layer of the superior colliculusipsiOp1
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus intermediate layersipsiSCi-0.5
Intermediate gray layer of the superior colliculusipsiInG-0.5
Superior colliculus deep layersipsiSCd3
Peduncularpontine nucleusipsiPPN3
Peduncularpontine nucleus rostral partipsiPPNR-0.5
Rostromedial tegmental nucleusipsiRMTg1
Substantia nigra A9ipsiSN2
Ventral tegmental area A10ipsiVTA2
Interfascicular nucleusipsiIF0
Caudal linear nucleus of the rapheipsiCLi1
Lateral tegmental nucleusipsiLTN1
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg2
Dorsal tegmental nucleusipsiDTg1
Ventral tegmentum adjacent to mesencephalic periaqueductal grayipsiTGAamPAG-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Pedunculopontine tegmental nucleus caudal partipsiPPTgC-0.5
Cerebellar lobule 9ipsiCERL9-0.5
Cerebellar lobule 10ipsiCERL10-0.5
Locus coeruleusipsiLC2
Pons caudal partipsiPca-0.5
Pons oral part central portionipsiPorCe3
Pons oral part dorsal portionipsiPorDo3
Pontine grayipsiPG3
Reticular systemipsiRF1
Intermediate reticular nucleusipsiIRt1
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe3
Pontine reticular nucleusipsiPRN0.5
Pontine reticular nucleus central partipsiNRTPc3
Pontine reticular nucleus oral partipsiPnO2.5
Pontine reticular nucleus oral part central partipsiPnOC2.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Pontine reticular nucleus ventrocaudal partipsiPRNvc3
Peribrachial regionipsiPBR2
Cuneiforme nucleus caudal partipsiCnFc3
Parabrachial nucleusipsiPB3
Parabrachial nucleus caudal partipsiPBca-0.5
Parabrachial nucleus dorsal partipsiPBD0
Parabrachial nucleus medialipsiPBnMe-1
Lateral reticular nucleusipsiLRt2
Lateral reticular nucleus parvicellular partipsiLRtPC3
Medullary reticular nucleusipsiMdD-0.5
Midline part of the hypoglossal nucleusipsi12SMM-0.5
Caudal part of the hypoglossal nucleusipsi12SC-0.5
Trochlear nucleusipsi4-0.5
Superior vestibular nucleusipsiSuVe2
Lateral vestibular nucleusipsiLVe2
Dorsal motor nucleus of vagusipsi100
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR3
Ventral part of the central dorsal raphe nucleusipsiDRvcep3
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Dorsal raphe nucleus dorsomedian partipsiDRdmm2
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus caudal midlineipsiDRcmip1
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme2
Median raphe nucleusipsiMnR3
Superior central raphe nucleusipsiCS2
Raphe pallidus nucleusipsiRPa2
Inferior oliveipsiIO3
Olivary pretectal nucleusipsiOPT0
ProsencephalonipsiPRC-0.5
Basal forebrainipsiBAF3
Endopiriform systemipsiEnN-0.5
Diagonal band of BrocaipsiDBB1
Nucleus of the diagonal band of Broca dorsal partipsiVDBD3
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS3
Substantia innominataipsiSI3
Substantia innominata anterior partipsiSIA1
Substantia innominata posterior partipsiSIP1
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO1
Medial preoptic nucleusipsiMPO0
Tuberomammillary nucleus dorsomedial partipsiTBMdm1
Ventral tuberomammillary nucleusipsiVTM1
Glia limitans ventral to the ventral tuberomammillary nucleusipsiTuMgL1
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral division of the hypothalamusipsiLdHYPO-0.5
Posterior region [Lateral division of the hypothalamus]ipsiPReg-1
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area medial partipsiLHAm1
Lateral hypothalamic area perifornical partipsiPFx2
Tuberal nucleusipsiTU-1
Lateral hypothalamus adjacent to the ventral tuberomammillary nucleusipsiLHVTM1
Medial division of the hypothalamusipsiMdH3
Anterior hypothalamic areaipsiAHA-1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe0.5
Dorsal hypothalamic areaipsiDA-0.5
Paraventricular hypothalamic nucleusipsiPa1
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Lateral mammillary nucleusipsiLM1
Premammillary nucleus dorsal partipsiPMD1
Premammillary nucleus ventromedial partipsiPMvm1
Supramammillar nucleus lateral partipsiSuML1
Retrochiasmatic areaipsiRCh0
ThalamusipsiT0.5
Caudal thalamusipsiCauT3
Anterior group of the dorsal thalamusipsiATN2
Dorsal part of the lateral geniculate complexipsiLGd0
Ventral part of the lateral geniculate complexipsiLGv0
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF3
Parafascicular thalamic nucleus lateral partipsiPFL3
Posterior thalamic nuclear groupipsiPo2
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus medial partipsiMDM3
Mediodorsal thalamic nucleus paralemellar divisionipsiMDpL-0.5
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleus middle divisionipsiPVMiD0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleus lateral partipsiReL1
Ventrolateral thalamic nucleusipsiVL1.5
Ventromedial thalamic nucleusipsiVM3
Ventromedial thalamic nucleus caudal partipsiVMc2
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt2
Ventromedial thalamic nucleus lateral partipsiVML-0.5
Intralaminar nucleiipsiILN-0.5
Parafascicular centre-median complexipsiPFCM-0.5
Lateral posterior thalamic nucleusipsiLP0
Laterodorsal thalamic nucleusipsiLD2
Rostral thalamusipsiRoT2
Ventral thalamusipsiVNT-0.5
Reticular thalamic nucleusipsiRt3
Reticular thalamic nucleus rostral partipsiRtr1
Lateral part of reticular thalamic nucleus rostral partipsiRtrL1
Ventral part of reticular thalamic nucleus rostral partipsiRtrVe1
Subparafascicular thalamic nucleusipsiSPF-1
Ventral medial nucleus of the thalamusipsiVMT3
Zona incertaipsiZI3
Lateral habenular nucleusipsiLHb1
Anterior pretectal nucleusipsiAPT0
Ventral part of internal capsuleipsiicv3
Cerebral peduncle basal partipsicp-0.5
Medial lemniscusipsiml-2
Stria medullaris of the thalamusipsism0
Lateral terminal nucleus of the accessory optic tractipsiLTeN2
Medial terminal nucleus of the accessory optic tractipsiMT0
Amygdaloid complexipsiAC-0.5
Laterobasal nuclear complexipsiLBNC-0.5
Basal nucleusipsiBnc2
Basal magnocellular nucleus rostral poleipsiBmcR-0.5
Basolateral amygdaloid nucleusipsiBL3
Basomedial amygdaloid nucleusipsiBM1
Lateral amygdaloid nucleusipsiLA-0.5
Bed nucleus of the stria terminalisipsiBST1
Interstitial nucleus of the stria terminalisipsiBSTis-0.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus ventral partipsiCeV-0.5
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC1
Sublenticular extended amygdalaipsiSLEA2
Amygdalopiriform transition areaipsiAPir-0.5
Anterior amygdaloid areaipsiAA0.5
Medial amygdaloid nucleusipsiMe0.5
Basal gangliaipsiBG-0.5
ClaustrumipsiCl3
Rostral part of claustrumipsiRCl2
Globus pallidusipsiGP3
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP2
Peripallidal regionipsiPePa4
Subpallidal regionipsiSuPa1
Ventral pallidumipsiVP3
Ventral pallidum dorsolateral partipsiVPdl0
Ventral pallidum medial partipsiVPm3
Ventral pallidum ventromedial partipsiVPvm0.5
StriatumipsiSTR4
Accumbens nucleusipsiAc1
Accumbens nucleus anterolateral partipsiAcAL1
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus shellipsiAcbSh2.5
Caudomedial accumbensipsiAcbCM1
Caudate putamenipsiCPu4
Anterior striatumipsiAStri3
Anterodorsal part of the caudate putamenipsiCPuAD3
Anteromedial striatumipsiCPuam3
Dorsomedial striatumipsiCPudm2
Medial striatumipsiCPum4
Caudal striatumipsiCPuc3
Central striatumipsiCPuce-0.5
Dorsal striatumipsiCPud-0.5
Dorsolateral striatum dorsal partipsiCPudlD-0.5
Rostral striatumipsiCPur4
Caudal part of the ventromedial part of the rostral half of the caudate putamenipsiCPucvmrh3
Rostrocaudal region of the caudate putamenipsiRCCPu-0.5
Medium spiny cells of the caudate putamenipsiCPums-0.5
Tail of the striatumipsiCPuTa-0.5
Subthalamic nucleusipsiSTh2
Cerebral cortexipsiCEC3
HippocampusipsiHIPP-0.5
Dentate gyrusipsiDG-0.5
Field CA1 of hippocampusipsiCA1-0.5
Field CA3 of hippocampusipsiCA3-0.5
Fornixipsif-2
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt0.5
Medial entorhinal cortexipsiMEnt0.5
Ventrolateral entorhinal cortex layer 2ipsiVLENTL2-0.5
Ventrolateral entorhinal cortex layer 3ipsiVLENTL3-0.5
Piriform cortexipsiPir3
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC3
Area 24aipsiA24a-0.5
Area 24bipsiA24b-0.5
Posterior cingulate cortexipsiPCC-0.5
Cingulate cortex parietal partipsiCgPa0
Cingulate cortex temporal partipsiCgTe0
Prelimbic cortexipsiPrL-0.5
NeocortexipsiNEOCX0
Frontal cortex area 2ipsiFr2-0.5
Parietal association cortexipsiPtA2
Auditory regionsipsiAU2
Suprarhinal regionipsiSRR-0.5
Agranular insular cortex rostral partipsiRAIC3
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR1
Prefrontal cortexipsiPFC3
Prefrontal cortex supragenual partipsisgPFC-0.5
Pregenual sector of the prefrontal cortexipsipgPFC-0.5
Somatomotoric regionsipsiSMR-0.5
Forelimb motor cortexipsiFMCx3
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx-2
Jaw movement motor cortexipsiJMCx-2
Medial prefrontal cortexipsimPFC-0.5
Sensory regionsipsiSR-1
Primary somatosensory cortex barrel fieldipsiS1BF1
Primary somatosensory cortex forelimb regionipsiS1FL2
Orbitofrontal cortexipsiOrFCx0
Ventrolateral orbital areaipsiVLO1
Ventral lateral geniculate nucleusipsiVLG-0.5
Olfactory bulb A16ipsiMOB1
Olfactory cortexipsiOcx-0.5
Olfactory tubercleipsiTuO3
Olfactory tubercle lateral partipsiTuOL1
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS-0.5
Spinal cordipsiMES0
Cervical segment 1ipsiCS10
Spinal cord layers C1ipsiSCLC10
Cervical segment 2ipsiCS20
Spinal cord layers C2ipsiSCLC20
Cervical segment 3ipsiCS3-0.5
Spinal cord layers C3ipsiSCLC30
Cervical segment 4ipsiCS4-0.5
Spinal cord layers C4ipsiSCLC40
Cervical segment 5ipsiCS50
Spinal cord layers C5ipsiSCLC50
Cervical segment 7ipsiCS7-1
Spinal gray matteripsiSGM0
Periaqueductal graycontraPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Red nucleuscontraR0
Superior colliculuscontraSC1
Ventral tegmental area A10contraVTA1
Lateral tegmental nucleuscontraLTN1
Ventral tegmental nucleuscontraVTg1
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleus caudal partcontraPPTgC-0.5
Deep mesencephalic nucleuscontraDpMe2
Pontine reticular nucleuscontraPRN0.5
Lateral reticular nucleuscontraLRt2
Medullary reticular nucleuscontraMdD-0.5
Dorsal motor nucleus of vaguscontra100
Raphe nucleicontraRAN1
Dorsal raphe nucleuscontraDR1
Raphe pallidus nucleuscontraRPa3
Substantia innominatacontraSI-0.5
Tuberomammillary nucleus dorsomedial partcontraTBMdm-0.5
Ventral tuberomammillary nucleuscontraVTM-0.5
Glia limitans ventral to the ventral tuberomammillary nucleuscontraTuMgL-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral hypothalamus adjacent to the ventral tuberomammillary nucleuscontraLHVTM-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0
Lateral mammillary nucleuscontraLM-0.5
Premammillary nucleus dorsal partcontraPMD-0.5
Premammillary nucleus ventromedial partcontraPMvm-0.5
Supramammillar nucleus lateral partcontraSuML-0.5
Retrochiasmatic areacontraRCh0
Anterior group of the dorsal thalamuscontraATN2
Parafascicular thalamic nucleuscontraPF2
Mediodorsal thalamic nucleus lateral partcontraMDL2
Mediodorsal thalamic nucleus paralemellar divisioncontraMDpL-0.5
Ventromedial thalamic nucleuscontraVM-0.5
Laterodorsal thalamic nucleuscontraLD2
Stria medullaris of the thalamuscontrasm0
Caudate putamencontraCPu3
Medial striatumcontraCPum0.5
Caudal striatumcontraCPuc0.5
Rostral striatumcontraCPur0.5
Subthalamic nucleuscontraSTh-0.5
Fornixcontraf0
Parietal association cortexcontraPtA2
Agranular insular cortex rostral partcontraRAIC0.5
Primary somatosensory cortex barrel fieldcontraS1BF0
Primary somatosensory cortex forelimb regioncontraS1FL0
Orbitofrontal cortexcontraOrFCx0
Ventrolateral orbital areacontraVLO2
Cervical segment 1contraCS10
Spinal cord layers C1contraSCLC10
Cervical segment 2contraCS20
Spinal cord layers C2contraSCLC20
Cervical segment 3contraCS30
Spinal cord layers C3contraSCLC30
Cervical segment 4contraCS40
Spinal cord layers C4contraSCLC40
Cervical segment 5contraCS50
Spinal cord layers C5contraSCLC50
Cervical segment 7contraCS7-1
Stellate ganglionipsiAutoSteG3
Pterygopalatine ganglionipsiAutoPpG-0.5
Hypoglossal nerveipsi12P2
Hypoglossal nervecontra12P1
Orbicularis oculi muscleipsiMuscOrbOc1
Femoral musclesipsiMuscFem-0.5
Lumbar epaxial musclesipsiMuscLep-0.5
Neck muscleipsiMuscNeck-0.5
Femoral bone marrowipsiOrgSkFemM1
TestisipsiOrgTest-0.5
Orbicularis oculi musclecontraMuscOrbOc1
Femoral bone marrowcontraOrgSkFemM1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Ventral half of the medial longitudinal fasciculusipsivhmlf-2
Oculomotor systemipsiOCS0
Periaqueductal grayipsiPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc2
Ventrolateral periaqueductal gray middle levelipsiVLPAGmL2
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Red nucleusipsiR1
Inferior colliculusipsiICOL0.5
External cortex of the inferior colliculus medial partipsiECICm1
Superior colliculusipsiSC2
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Peduncularpontine nucleusipsiPPN3
Peduncularpontine nucleus anterior partipsiPPNan2
Peduncularpontine nucleus posterior partipsiPPNP2
Peduncularpontine nucleus rostral partipsiPPNR-0.5
Rostromedial tegmental nucleusipsiRMTg-0.5
Ventral midbrain tegmentumipsiVeMT-0.5
Substantia nigra A9ipsiSN2
Substantia nigra A9 posterior partipsiSNP-0.5
Substantia nigra caudal partipsiSNcp-0.5
Substantia nigra compact partipsiSNC3
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part lateral tieripsiSNRL-0.5
Substantia nigra reticular part rostromedial part ventral portionipsiSNRrmV0
Substantia nigra rostral partipsiSNrp-0.5
Ventral tegmental area A10ipsiVTA1
Peripeduncular areaipsiPPA-3
Retrorubral nucleusipsiRR2
Transitional region between ventral tegmental area and the medial substantia nigra pars compactaipsiTRVTAmSNC-0.5
Ventrolateral tegmental areaipsiVLTg-0.5
Laterodorsal tegmental nucleusipsiLDTg2.5
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg3
Pedunculopontine tegmental nucleus caudal partipsiPPTgC-0.5
Pedunculopontine tegmental nucleus medial partipsiPPTgM2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Pedunculopontine tegmental nucleus rostral partipsiPPTgR-0.5
Ventrolateral part of the pedunculopontine tegmental nucleus rostral partipsiPPTgRVL-0.5
Lateral cerebellar nucleusipsiCERL3
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA70.5
Barringtons nucleusipsiBar2
Locus coeruleusipsiLC4
Pontomesencephalic grayipsiPoMG2.5
Pontomesencephalotegmental complexipsiPMTC-0.5
Mesencephalic reticular formationipsiMRF1
Deep mesencephalic nucleusipsiDpMe2
Reticular formation lateral of the median rapheipsiRfMR-0.5
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus oral partipsiPnO1
Pontomesencephalic reticular formationipsiPMRF1
Peribrachial regionipsiPBR-0.5
Cuneiforme nucleusipsiCnF2
Cuneiforme nucleus anterior partipsiCnFa-0.5
Peribrachial cuneiforme nucleusipsiCnFPB2
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleusipsiGi-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
C1 adrenaline cellsipsiC14
C2 adrenaline cellsipsiC22
C3 adrenaline cellsipsiC30.5
Principal sensory trigeminal nucleusipsiPr53
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol-0.5
Dorsal raphe nucleusipsiDR4
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Dorsal raphe nucleus rostral partipsiDRr1.5
Dorsal raphe nucleus rostrocaudal partipsiDRrc-0.5
Ventral fountain portion of the dorsal raphe nucleusipsiDRVF3
Linear nucleus of the rapheipsiLIR-0.5
Rostral linear nucleus of the rapheipsiRLi-0.5
Median raphe nucleusipsiMnR-0.5
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg1
A1 noradrenergic cellsipsiA14
A2 noradrenergic cellsipsiA24
Cuneate nucleusipsiCu1
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Paragigantocellular reticular nucleus medial partipsiPGiM-0.5
Basal forebrainipsiBAF1
Ventral endopiriform nucleusipsiVEn0
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Medial preoptic area dorsolateral partipsiMPADL1
Magnocellular preoptic nucleusipsiMCPO1
Medial preoptic nucleusipsiMPO1
Ventrolateral preoptic nucleusipsiVLPO-0.5
Dorsolateral preoptic regionipsiPREOdL-0.5
HypothalamusipsiHYPO-0.5
Dorsal regionipsiDHR1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area posterolateral partipsiLHPL-0.5
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM0.5
Posterolateral hypothalamusipsiPLHY-0.5
Reticular lateral areaipsiRLA1
Anterior hypothalamic areaipsiAHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Dorsomedial hypothalamic nucleus ventral partipsiDMV-0.5
Posterior hypothalamic areaipsiPHA1
Lateral part of ventral subparaventricular zoneipsiSuPZvL0.5
Subparaventricular zone ventromedial partipsiSuPZvm0.5
Subparaventricular zone dorsomedial partipsiSuPZdm0.5
Subparaventricular zone dorsolateral partipsiSuPZdL0.5
Ventromedial hypothalamic nucleusipsiVMH0
Paraventricular hypothalamic nucleusipsiPa1
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Supramammillar nucleusipsiSuM-0.5
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
A8 dopamine cells retrorubral groupipsiRRF0.5
ThalamusipsiT2
Parafascicular thalamic nucleusipsiPF-0.5
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD1
Ventrobasal complexipsiVB1.5
Parafascicular centre-median complexipsiPFCM0
Ventral thalamusipsiVNT2
Reticular thalamic nucleus rostrocaudal partipsiRtrc1
Zona incertaipsiZI3
Forel field H1ipsiFFH13
Forel field H2ipsiFFH23
Zona incerta caudal partipsiZIC-0.5
Zona incerta dorsal partipsiZID3
Medial part of the dorsal zona incertaipsiZIDm-0.5
Zona incerta rostral partipsiZIR-0.5
Zona incerta ventral partipsiZIV-0.5
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb0
Corpus callosumipsicc-2
Ventral part of the medial terminal nucleus of the accessory optic tractipsiMTV1
Amygdaloid complexipsiAC1
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis ventral partipsiBNSTv-2
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt1
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM1
Central amygdaloid nucleus medial division rostral partipsiCeMR0.5
Anterior cortical amygdaloid nucleusipsiACo2
Medial amygdaloid nucleus dorsal tipipsiMeDT1
Globus pallidusipsiGP3
Caudal globus pallidusipsiGPc3
Caudal globus pallidus dorsal partipsiGPcd-0.5
Caudal globus pallidus medial partipsiGPcm-0.5
Globus pallidus anterior portionipsiGPAp1
Globus pallidus dorsolateral partipsiGPdL1
Globus pallidus rostrolateral partipsiGPrL-0.5
Lateral globus pallidusipsiLGP2
Lateral globus pallidus ventral half of bordersipsiLGPvhb2
External pallidus prototypic neuronesipsiLGPpn-0.5
Medial globus pallidusipsiMGP1.5
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa0
Ventral pallidumipsiVP2
Ventral pallidum dorsolateral partipsiVPdl2
Ventral pallidum ventromedial partipsiVPvm1
Globus pallidus central partipsiGPce1
StriatumipsiSTR3
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus shellipsiAcbSh-0.5
Lateral accumbens shellipsiAcbShl2
Medial accumbens shellipsiAcbShm2
Ventral shellipsiAcbShv-0.5
Caudate putamenipsiCPu4
Anterior striatumipsiAStri3
Anteromedial striatumipsiCPuam2
Dorsomedial striatumipsiCPudm2
Medial striatumipsiCPum1
Rostrocaudal extrent of the medial striatumipsiCPumRC-0.5
Caudal striatumipsiCPuc2
Caudal striatum mediodorsal partipsiCPumd-0.5
Caudal striatum ventrolateral partipsiCPuVL3
Caudal striatum ventromedial partipsiCPucvm3
Central striatumipsiCPuce2
Dorsal striatumipsiCPud3
Dorsolateral striatumipsiCPudl2
Posterior caudate putamenipsiCPup-0.5
Rostral striatumipsiCPur1
Rostrocaudal striatumipsiCPurc3
Ventral striatumipsiCPuv2
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm2
Medium spiny cells of the caudate putamenipsiCPums-0.5
Large aspiny neurons of the caudate putamenipsiCPuLA-0.5
Caudate putamen tailipsiCPuT2
Middle-third of the caudate putamenipsiCPuMit2
Lateral striatumipsiCPul3
Subthalamic nucleusipsiSTh3
Parasubthalamic nucleusipsiPSTh4
Subthalamic nucleus caudomedial partipsiSThCM-0.5
Subthalamic nucleus medial capipsiSThMc4
Cerebral cortexipsiCEC2
Cingulate cortexipsiCg1
Anterior cingulate cortex medial partipsiACCM-0.5
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Cingulate cortex area 3 layer 5ipsiCg3L51
Cingulate cortex caudal intermediate partipsiCg2i-0.5
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex dorsal part layer 5ipsiPrLdL5-0.5
Prelimbic cortex rostral partipsiPrLr3
Prelimbic cortex ventral partipsiPrLv1.5
Infralimbic cortexipsiIL2
Frontal association cortexipsiFrA-0.5
Dorsal part of frontal association cortexipsiFrAD-0.5
Frontal association cortex layer 5ipsiFrALL52
Frontal association cortex posteromedial partipsiFrAPM-0.5
Frontal cortex area 2ipsiFr23
Frontal cortex area 3ipsiFr3-0.5
Most anterior part of the frontal cortexipsiFrAA-0.5
Parietal association cortexipsiPtA1
Parietal association cortex layer 5ipsiParPLa52
Parietal cortex area 1 medial partipsiPar1M-0.5
Suprarhinal regionipsiSRR1.5
Agranular insular cortexipsiAI3
Middle part of the caudal one-third of the dysgranular insular cortexipsiDIvCotMi-2
Caudal part of the caudal one-third of the dysgranular insular cortexipsiDIvCotC-2
Rostral two-thirds of the dysgranular insular cortexipsiRDIrtt2
Caudal part of the caudal one-third of the granular insular cortexipsiGICotC-2
Middle part of the caudal one-third of the granular insular cortexipsiGICotM-2
Rostral two-thirds of the granular insular cortexipsiRttGI2
Dorsal granular insular cortexipsiDGI1
Mid-dorsal peduncular cortexipsiMiDP-2
Prefrontal cortexipsiPFC1
Most anterior part of the prefrontal cortexipsiPFCmA-0.5
Prefrontal cortex supragenual partipsisgPFC1.5
Motoric regionsipsiM-0.5
Lateral agranular prefrontal cortexipsiAGl2
Forelimb motor cortexipsiFMCx-2
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx-2
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL5-2
Jaw movement motor cortexipsiJMCx-2
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortex rostral partipsirAGm-0.5
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL5-2
Secondary somatosensory cortex layer 5ipsiS2L5-0.5
Visual regionsipsiVR1
Orbital cortexipsiOrC3
Neocortex layer 5ipsiNEOCXL53
Olfactory tubercleipsiTuO0
Olfactory tubercle polymorph layeripsiTuOpo-0.5
Central graycontraCG0.5
Peduncularpontine nucleuscontraPPN1
Laterodorsal tegmental nucleuscontraLDTg0.5
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN1
Pedunculopontine tegmental nucleuscontraPPTg1.5
Pedunculopontine tegmental nucleus pars compactacontraPPNC1
Pedunculopontine tegmental nucleus pars dissipatacontraPPNd1
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Pontine reticular nucleuscontraPRN0.5
Peribrachial regioncontraPBR-0.5
Lateral parabrachial nucleuscontraLPB1
C1 adrenaline cellscontraC10.5
C2 adrenaline cellscontraC20.5
C3 adrenaline cellscontraC30.5
Dorsal raphe nucleuscontraDR1
Dorsal raphe nucleus rostral partcontraDRr1
A1 noradrenergic cellscontraA10.5
A2 noradrenergic cellscontraA21
Medial preoptic nucleuscontraMPO-0.5
Lateral hypothalamic areacontraLH1
Posterolateral hypothalamuscontraPLHY-0.5
Medial group of the dorsal thalamuscontraMED0
Mediodorsal thalamic nucleuscontraMD0
Ventrobasal complexcontraVB0
Central amygdaloid nucleus lateral divisioncontraCeL0.5
Central amygdaloid nucleus medial division rostral partcontraCeMR0.5
Caudate putamencontraCPu-0.5
Subthalamic nucleuscontraSTh0
Cingulate cortex caudal intermediate partcontraCg2i-0.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Neocortex layer 5contraNEOCXL50
Cervical enlargementcontraCSegE-0.5
Cervical enlargement dorsal horncontraCSegEd-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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