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Rat connectome



Reticular system left


Abbreviation
RF
Color       
Superior regionsPons

SynonymsAbbr.Language
Reticular systemRFEng
Formatio reticularis Lat
Reticular formation of neck Eng
Reticular core Eng
Reticular area Eng
Reticular formation  
Reticular territories Eng
Reticular complex Eng
Brainstem reticular formation Eng

SubregionsSide
Caudal reticular formationleft
Caudoventrolateral reticular nucleusleft
Conterminal nucleusleft
Dorsal reticular formation adjacent to the spinal trigeminal nucleus interpolar part and subjacent to the nucleus of the solitary tractleft
Dorsal reticular formationleft
Dorsolateral reticular formationleft
Dorsomedial reticular formationleft
Intermediate reticular nucleusleft
Isthmic reticular formationleft
Magnocellular reticular nucleusleft
Medial reticular formationleft
Median reticular nucleusleft
Midline reticular formationleft
Paramedian reticular nucleusleft
Preparasubthalamic nucleusleft
Reticular area ventral to rostroventrolateral reticular nucleusleft
Reticular formation adjacent to the principal sensory trigeminal nucleusleft
Reticular formation adjacent to the spinal trigeminal nucleus interpolar partleft
Reticular formation adjacent to the spinal trigeminal nucleus oral partleft
Reticular formation adjacent to the trigeminal brainstem nuclear complexleft
Reticular formation at trigeminal motor nucleusleft
Reticular formation caudal to the Mo5left
Reticular formation rostral to inferior oliveleft
Rostroventral reticular formationleft
Rostroventrolateral reticular nucleusleft
Ventral reticular formationleft
Ventrolateral reticular formationleft
Ventromedial reticular formationleft
Reticular formation adjacent to the periaqueductal grayleft
Perifascicular reticular formationleft
Reticular formation adjacent to the nucleus ambiguusleft
Retrotrigeminal reticular formationleft
Reticular region medial to the jaw opening component of the trigeminal motorleft
Pontobulbar reticular formationleft
Reticular formation surrounding the trigeminal motor nucleusleft
Reticular formation anteroposterior partleft
Reticular formation dorsoventral partleft
Medial brainstem reticular nucleusleft
Rhombencephalic reticular formationleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG-1
Periaqueductal grayipsiPAG0.5
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleus caudal partipsiRnCa3
Dorsolateral part of the caudal red nucleusipsiDLRnCa3
Inferior colliculusipsiICOL1
Superior colliculusipsiSC-2
Ventral midbrain tegmentumipsiVeMT-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Pedunculopontine tegmental nucleusipsiPPTg3
Molecular layer of the cerebellum cortexipsiMoCb0
Granule cell layer of the cerebellumipsiGrCb3
Cerebellar white matteripsicbw-2
Locus coeruleusipsiLC1
Pontine nucleiipsiPn2
Reticular systemipsiRF2
Caudoventrolateral reticular nucleusipsiCVLR-0.5
Intermediate reticular nucleus alpha partipsiIRtA3
Magnocellular reticular nucleusipsiNRMC1
Nucleus reticularis subcuneiformisipsiRScf3
Ventral mesencephalic reticular formationipsiMRFV-0.5
Cuneiforme nucleus rostral partipsiCnFro-0.5
Parabrachial nucleusipsiPB0
Lateral parabrachial nucleus external partipsiLPBE1
Gigantocellular reticular nucleusipsiGi-0.5
Medullary reticular nucleusipsiMdD-0.5
Parvicellular reticular nucleusipsiPCRt1
Dorsal parvocellular reticular formationipsiDPCRt1
Trapezoid bodyipsitz-0.5
Ambiguus nucleusipsiAmb1
Ambiguus nucleus compact partipsiAmbC3
Ambiguus nucleus semicompact formationipsiAmbSeC1
Facial nucleusipsi73
Facial nucleus intermediate partipsi7i3
Facial nucleus lateral subnucleusipsi7L2
Facial nucleus medial partipsi7M2
Facial nucleus dorsal intermediate subnucleusipsi7DI1
Hypoglossal nucleusipsi12S3
Hypoglossal motor nucleusipsi12M3
Dorsal subdivision of the hypoglossal motor nucleusipsi12Md-0.5
Ventral subdivision of the hypoglossal motor nucleusipsi12MV-0.5
Hypoglossal nucleus ventral partipsi12SV-0.5
Reticular formation immediatly surrounding the hypoglossal nucleusipsi12SRF-0.5
Mesencephalic trigeminal nucleusipsiMe5-0.5
Motor trigeminal nucleusipsiMo53
Motor trigeminal nucleus ventral partipsiMo5V3
Principal sensory trigeminal nucleusipsiPr51
Principal sensory trigeminal nucleus dorsal partipsiPr5D-0.5
Principal sensory trigeminal nucleus ventral partipsiPr5v-0.5
Trigeminal subnucleus caudalis lamina 1ipsi5SSCL13
Trigeminal subnucleus caudalis lamina 2ipsi5SSCL23
Trigeminal subnucleus caudalis lamina 3ipsi5SSCL33
Trigeminal subnucleus caudalis lamina 4ipsi5SSCL43
Trigeminal subnucleus caudalis lamina 5ipsi5SSCL53
Trigeminal subnucleus caudalis deep lamina 6ipsi5SSCdL63
Peritrigeminal zoneipsiP51
Spinal vestibular nucleusipsiSpVe1
Medial vestibular nucleusipsiMVe1
Nucleus of the solitary tract commissural partipsiSolC1
Nucleus of the solitary tract adjacent to the nucleus nervi vagiipsiSola10-0.5
Dorsal motor nucleus of vagusipsi102
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR0.5
Raphe obscurus nucleusipsiROb-0.5
Ventral portion of the raphe nucleiipsiRANV-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
Ventral respiratory group caudal partipsiVCReG3
Inferior oliveipsiIO-0.5
Inferior olive dorsal nucleus lateral partipsiIODL2
Inferior olive medial nucleus lateral partipsiIOML2
Inferior olive principal nucleusipsiIOPr2
Inferior olive principal nucleus rostral partipsiIOPrR2
T-area of the Inferior oliveipsiTaIO0.5
Rostral periolivary regionipsiRPO-0.5
Medial superior oliveipsiMSO-2
Caudal superior olivary complexipsiSuOLiC-2
Superior paraolivary nucleusipsiSPO-0.5
Lateral paragigantocellular nucleusipsiLPGi1
Retrotrapezoid nucleusipsiRTN1
Superior salivatory nucleusipsiSuS-0.5
Ventral medulla oblongataipsiVMeO-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS-0.5
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA-0.5
Lateral margin of the lreoptic nucleusipsiPREnLM-0.5
Lateral hypothalamic areaipsiLH3
Posterolateral hypothalamusipsiPLHY3
Anterior hypothalamic areaipsiAHA0.5
Medial basal hypothalamusipsiMBH-0.5
Ventromedial hypothalamic nucleus central partipsiVMHC0
Ventromedial hypothalamic nucleus shellipsiVMS0
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP1
Paraventricular nucleus medial partipsiPame3
Periventricular hypothalamic nucleusipsiPe0
Supraoptic nucleus anterior divisionipsiSOA1
Supraoptic nucleus tuberal partipsiSOT-0.5
Retrochiasmatic areaipsiRCh2
Dorsal thalamusipsiDOR1
Anteroventral thalamic nucleusipsiAV2
Central medial thalamic nucleus lateral partipsiCMl2
Centrolateral thalamic nucleusipsiCL3
Centrolateral thalamic nucleus rostral partipsiCLr2
Parafascicular thalamic nucleusipsiPF-1
Mediodorsal thalamic nucleusipsiMD3
Submedius thalamic nucleusipsiSub1
Paraventricular thalamic nucleusipsiPV-0.5
Reuniens thalamic nucleusipsiRe0.5
Ventrolateral thalamic nucleus dorsal partipsiVLD2
Arcuate nuclei of ventrobasal complexipsiAVB3
Ventromedial thalamic nucleus caudal partipsiVMc-0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-0.5
Lateral posterior thalamic nucleusipsiLP3
Posterior groupipsiPTG-0.5
Reticular thalamic nucleusipsiRt2
Subparafascicular thalamic nucleusipsiSPF-1
Zona incerta dorsal partipsiZID-0.5
Lateral portion of the internal capsuleipsiLic1
Dorsolateral funiculusipsidlft0.5
Dorsolateral funiculus cervical part C5ipsidlftC50.5
Dorsolateral funiculus cervical part C6ipsidlftC60.5
Ventral part of the ventral half of the lateral lemniscusipsillvhv-0.5
Amygdaloid complexipsiAC1
Basal nucleus ventral divisonipsiBncV-0.5
Central amygdaloid nucleusipsiCe0.5
Globus pallidusipsiGP-0.5
Lateral globus pallidusipsiLGP1
StriatumipsiSTR-0.5
Accumbens nucleusipsiAc1
Caudate putamenipsiCPu1
Caudal striatumipsiCPuc1
Parasubthalamic nucleusipsiPSTh1
Cerebral cortexipsiCEC0
Frontal association cortexipsiFrA3
Lateral parietal association cortexipsiLPtA1
Temporal cortexipsiTE1
Granular insular cortexipsiGI-0.5
Lateral agranular prefrontal cortexipsiAGl1
Forelimb motor cortexipsiFMCx-2
Caudal forelimb motor areaipsiCFMA-2
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx-2
Jaw movement motor cortexipsiJMCx1
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS12
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO1
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC-0.5
Olfactory cortexipsiOcx-0.5
Olfactory tubercleipsiTuO1
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS-0.5
Mid-lateral septumipsimiLS2
Spinal cordipsiMES-0.5
Gray matter of spinal cordipsiGMES1
Cervical segmentsipsiCSeg3
Cervical segment 1ipsiCS1-0.5
Intermediate zone C1ipsiizVHC1-0.5
Cervical segment 2ipsiCS2-0.5
Phrenic motoneurons of lamina 9 C4ipsiPh9C4-0.5
Dorsal horn C5ipsiDHC50.5
Phrenic motoneurons of lamina 9 C5ipsiPh9C5-0.5
Dorsal horn C6ipsiDHC60.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 8 C7ipsiSCL8C7-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layer 8 C8ipsiSCL8C8-0.5
Upper thoracic spinal cordipsiTSegUp-0.5
Thoracal segment 1ipsiT1-0.5
Thoracal segment 2ipsiT2-0.5
Thoracal segment 3ipsiT3-0.5
Thoracal segment 4ipsiT4-0.5
Lumbar segmentsipsiLSeg-0.5
Lumbar segment 1ipsiL1-0.5
Intermediate zone L1ipsiizVHL13
Spinal cord layer 9 L1ipsiSCL9L13
Lumbar segment 2ipsiL2-0.5
Intermediate zone L2ipsiizVHL23
Spinal cord layer 9 L2ipsiSCL9L23
Lumbar segment 3ipsiL3-0.5
Intermediate zone L3ipsiizVHL33
Spinal cord layer 9 L3ipsiSCL9L33
Lumbar segment 4ipsiL4-0.5
Intermediate zone L4ipsiizVHL43
Spinal cord layer 9 L4ipsiSCL9L43
Lumbar segment 5ipsiL5-0.5
Intermediate zone L5ipsiizVHL53
Spinal cord layer 9 L5ipsiSCL9L53
Lumbar segment 6ipsiL6-0.5
Intermediate zone L6ipsiizVHL63
Spinal cord layer 9 L6ipsiSCL9L63
Ventrolateral periaqueductal graycontraVLPAG3
Superior colliculuscontraSC-2
Lateral interposed cerebellar nucleuscontraICNL-0.5
Pontine nucleicontraPn3
Intermediate reticular nucleus alpha partcontraIRtA3
Parabrachial nucleuscontraPB0
Medullary reticular nucleuscontraMdD-0.5
Dorsal parvocellular reticular formationcontraDPCRt2
Ambiguus nucleuscontraAmb1
Facial nucleuscontra73
Facial nucleus intermediate partcontra7i-0.5
Facial nucleus lateral subnucleuscontra7L-0.5
Facial nucleus medial partcontra7M-0.5
Hypoglossal nucleuscontra12S1
Hypoglossal motor nucleuscontra12M-0.5
Mesencephalic trigeminal nucleuscontraMe5-0.5
Motor trigeminal nucleuscontraMo5-0.5
Peritrigeminal zonecontraP51
Nucleus of the solitary tract commissural partcontraSolC1
Nucleus of the solitary tract adjacent to the nucleus nervi vagicontraSola10-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Ventral respiratory group caudal partcontraVCReG1
Retrotrapezoid nucleuscontraRTN0.5
Superior salivatory nucleuscontraSuS-0.5
Rostral ventral medulla oblongatacontraRVMeO-0.5
Nucleus of the vertical limb of the diagonal bandcontraVDB-0.5
Medial septal nucleuscontraMS-0.5
Medial preoptic areacontraMPA-0.5
Posterolateral hypothalamuscontraPLHY3
Paraventricular hypothalamic nucleus magnocellular division posterior partcontraPaMagP1
Supraoptic nucleus anterior divisioncontraSOA-0.5
Supraoptic nucleus tuberal partcontraSOT-0.5
Anteroventral thalamic nucleuscontraAV1
Central medial thalamic nucleus lateral partcontraCMl1
Centrolateral thalamic nucleus rostral partcontraCLr1
Ventrolateral thalamic nucleus dorsal partcontraVLD1
Ventral posteromedial thalamic nucleuscontraVPM1
Ventromedial thalamic nucleus caudal partcontraVMc-0.5
Ventromedial thalamic nucleus caudal two thirdscontraVMctt-0.5
Posterior groupcontraPTG1
Reticular thalamic nucleuscontraRt1
Dorsolateral funiculuscontradlft0.5
Dorsolateral funiculus cervical part C5contradlftC50.5
Dorsolateral funiculus cervical part C6contradlftC60.5
Basal nucleus ventral divisoncontraBncV-0.5
Basolateral amygdaloid nucleuscontraBL-0.5
Basomedial amygdaloid nucleuscontraBM-0.5
Forelimb motor cortexcontraFMCx3
Caudal forelimb motor areacontraCFMA3
Lateral part of the granular cortex of forelimb motor regionscontraLFMCx3
Lateral septal nucleuscontraLS-0.5
Gray matter of spinal cordcontraGMES1
Intermediate zone C1contraizVHC1-0.5
Phrenic motoneurons of lamina 9 C4contraPh9C4-0.5
Dorsal horn C5contraDHC50.5
Phrenic motoneurons of lamina 9 C5contraPh9C5-0.5
Dorsal horn C6contraDHC60.5
Lumbar segment 1contraL13
Intermediate zone L1contraizVHL13
Spinal cord layer 9 L1contraSCL9L13
Lumbar segment 2contraL23
Intermediate zone L2contraizVHL23
Spinal cord layer 9 L2contraSCL9L23
Lumbar segment 3contraL33
Intermediate zone L3contraizVHL33
Spinal cord layer 9 L3contraSCL9L33
Lumbar segment 4contraL43
Intermediate zone L4contraizVHL43
Spinal cord layer 9 L4contraSCL9L43
Lumbar segment 5contraL53
Intermediate zone L5contraizVHL53
Spinal cord layer 9 L5contraSCL9L53
Lumbar segment 6contraL63
Intermediate zone L6contraizVHL63
Spinal cord layer 9 L6contraSCL9L63
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa33
Sacral segment 4contraSa43
Sphenopalatine ganglionipsiAutoSPG1
Vagus nerveipsiAutoV0.5
Facial nerveipsi7fn3
Submandicular branch of the chorda tympaniipsi7fnChoTysm-0.5
Stylohyoid and digastric branch of the facial nerveipsi7fnsd-0.5
Mylohyoid nerveipsimyhy0
Vagus nervecontraAutoV0
MyocardiumipsiOrgsCorMyo1
MyocardiumcontraOrgsCorMyo1
PharynxipsiOrgPhar1
Middle earipsiOrgMiEar-0.5
Bulbocavernosus muscleipsiMuscBCV-10
Bulbospongiosus muscleipsiMuscbsp2
Ischiocavernosus muscleipsiMuscicav-10
Musculus levator aniipsiMuscLevAn3
Sternomastoid muscleipsiMuscST3
Intraperitoneal cavityipsiOrgiPTC1
CervixipsiOrgUTC-10
Uterine hornipsiOrgUTh-10
Uterus bodyipsiOrgUTB-10
Bulbocavernosus musclecontraMuscBCV-10
Ischiocavernosus musclecontraMuscicav-10
Pancreas sideipsiOrgsPancs-0.5

Input from

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Central grayipsiCG1
Central gray mesencephalic partipsiCGM-1
Paralemniscal nucleusipsiPL0
Dorsomedial periaqueductal grayipsiDMPAG-0.5
Red nucleusipsiR1
Red nucleus caudal partipsiRnCa-1
Inferior colliculusipsiICOL-1
Central nucleus of the inferior colliculusipsiCIC-0.5
Superior colliculusipsiSC-1
Superior colliculus intermediate layersipsiSCi-0.5
Intermediate white layer of the superior colliculusipsiInWh1
Deep gray layer of the superior colliculusipsiDpG-0.5
Substantia nigra A9ipsiSN1
Substantia nigra A9 dorsal partipsiSND-0.5
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part lateral tieripsiSNCL2
Medialmost part of substantia nigra pars lateralisipsiSNLm2
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part lateral tieripsiSNRL2
Substantia nigra reticular part ventral subdivisionipsiSNRv-0.5
Substantia nigra rostral partipsiSNrp2
Substantia nigra rostrocaudal partipsiSNrc2
Ventral tegmental area A10ipsiVTA-0.5
Laterodorsal tegmental nucleusipsiLDTg0
Ventral tegmental nucleusipsiVTg-0.5
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Cerebellar cortexipsiCERC0
Deep cerebellar nucleiipsiDNC1
Lateral cerebellar nucleusipsiCERL-1
Medial cerebellar nucleusipsiMed1
Locus coeruleusipsiLC0.5
Locus coeruleus dorsal partipsiLCD2
Locus coeruleus rostral partipsiLCRo1.5
Prepositus nucleusipsiPr-1
Reticular systemipsiRF2
Mesencephalic reticular formationipsiMRF-1
Pontine reticular nucleusipsiPRN-1
Pontine reticular nucleus oral partipsiPnO1
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF1
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt-1
Medullary reticular nucleusipsiMdD-1
Parvicellular reticular nucleusipsiPCRt-0.5
Rostrocaudal extent of the ventral nucleus of the trapezoid bodyipsiVNTBrc-2
Mesencephalic trigeminal nucleusipsiMe5-0.5
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp-0.5
Principal sensory trigeminal nucleusipsiPr51
Spinal trigeminal nucleusipsiSp5nc-0.5
Spinal trigeminal nucleus caudal partipsiSp5C1
Spinal trigeminal nucleus interpolar partipsiSp5I1
Trigeminal subnucleus caudalis lamina 1ipsi5SSCL12
Trigeminal subnucleus caudalis lamina 2oipsi5SSCL2o2
Trigeminal ganglionipsi5Gn3
Cochlear systemipsiCOS-1
Cochlear nucleusipsiCON3
Dorsal cochlear nucleusipsiDC-0.5
Posteroventral cochlear nucleusipsiPVCON4
Vestibular nucleiipsiVnc3
Medial vestibular nucleusipsiMVe1
Lateral vestibular nucleusipsiLVe1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract medial partipsiSolM-0.5
Nucleus of the solitary tract posterior partipsiSolP-0.5
Parasolitary nucleusipsiPSol-1
Nucleus of the solitary tract rapidly adapting pulmonary stretch receptor second order neuronsipsiRAR-0.5
Nucleus of the solitary tract slowly adapting pulmonary stretch receptor second order neuronsipsiRAS-0.5
Raphe nucleiipsiRAN-1
Median raphe nucleusipsiMnR0
B9 serotonin cellsipsiB90
Caudal pressor area of the caudal medullaipsiCPAMeObm1
Inferior olive cap of Kooy of the medial nucleusipsiIOK-0.5
Rostral part of the rostral inferior olive medial nucleusipsiIOMrr-0.5
Inferior olive ventrolateral protrusionipsiIOVL-0.5
Rostral ventral respiratory groupipsiRVRG-0.5
Diagonal band of BrocaipsiDBB0
Substantia innominataipsiSI-0.5
Lateral preoptic areaipsiLPO-1
Medial preoptic areaipsiMPA-1
Medial preoptic area periventricular partipsiMPApv1
Lateral preoptic nucleusipsiLPN1
Magnocellular preoptic nucleusipsiMCPO0.5
Medial preoptic nucleusipsiMPO0
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral hypothalamic areaipsiLH-1
Lateral hypothalamic area posterior partipsiLHAp-0.5
Parvalbumin-positive nucleus of the lateral hypothalamusipsiPV12
Posterolateral hypothalamusipsiPLHY1.5
Anterior hypothalamic area posterior partipsiAHAP0.5
Anterior hypothalamic nucleusipsiAHn1
Anterior part of the anterior hypothalamic nucleusipsiAHna-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Ventromedial hypothalamic nucleus central partipsiVMHC0
Ventromedial hypothalamic nucleus shellipsiVMS0
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM-1
Paraventricular hypothalamic nucleusipsiPa4
Periventricular hypothalamic nucleusipsiPe0
A8 dopamine cells retrorubral groupipsiRRF-0.5
Retrochiasmatic areaipsiRCh2
Dorsal thalamusipsiDOR3
Centrolateral thalamic nucleus bushy cellsipsiCLb-0.5
Lateral group of the dorsal thalamusipsiLAT3
Mediodorsal thalamic nucleusipsiMD3
Ventral group of the dorsal thalamusipsiVENT3
Zona incertaipsiZI3
Lateral habenular nucleusipsiLHb0
Lateral habenular nucleus lateral partipsiLHbL-0.5
Medial habenular nucleusipsiMHb0
Medial forebrain bundleipsimfb1.5
Amygdaloid complexipsiAC-0.5
Basal nucleusipsiBnc-1
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis central divisionipsiBSTC-0.5
Bed nucleus of the stria terminalis intermediate divisionipsiBSTI-0.5
Central amygdaloid nucleusipsiCe3
Medial division of the sublenticular extended amygdalaipsiSLEAm-0.5
Anterior cortical amygdaloid nucleusipsiACo2
Medial amygdaloid nucleusipsiMe-0.5
Globus pallidusipsiGP0.5
Caudate putamenipsiCPu2
Subthalamic nucleusipsiSTh0.5
Cerebral cortex layer 5ipsiCCL5-0.5
Frontal cortex area 3aipsiFr3a1
Insular cortexipsiICX-1
Insular cortex caudal partipsiICXca1
Prefrontal cortexipsiPFC1
Lateral prefrontal cortexipsilPFC3
Lateral agranular prefrontal cortexipsiAGl1
Forelimb motor cortexipsiFMCx-2
Caudal forelimb motor areaipsiCFMA-2
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx-2
Jaw movement motor cortexipsiJMCx-0.5
Central part of jaw motor areaipsiCJMCx2.5
Primary motor jaw area layer 5ipsiJMCxL50.5
Whisker motor cortex subfieldsipsiWMCxS1
Whisker motor cortex A1ipsiWMCxA13
Medial prefrontal cortexipsimPFC3
Primary somatosensory cortex face regionipsiS1FR-2
Precommissural nucleusipsiPrC-2
Medial geniculate nucleus dorsal partipsiMGD0.5
Medial geniculate nucleus ventral partipsiMGV0.5
Septal regionipsiSER0
Direct dorsal column pathwayipsiddcp-2
Nucleus of dorsolateral funiculus C1ipsiNDLFC13
Area X C1ipsiSCL10C1-0.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 1 C1ipsiSCL1C10.5
Spinal cord layer 7 C1ipsiSCL7C1-0.5
Spinal cord layer 8 C1ipsiSCL8C1-0.5
Nucleus of dorsolateral funiculus C2ipsiNDLFC23
Spinal cord layers C2ipsiSCLC2-0.5
Area X C2ipsiSCL10C2-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 1 C2ipsiSCL1C20.5
Spinal cord layer 7 C2ipsiSCL7C2-0.5
Spinal cord layer 8 C2ipsiSCL8C2-0.5
Nucleus of dorsolateral funiculus C3ipsiNDLFC33
Spinal cord layers C3ipsiSCLC3-0.5
Area X C3ipsiSCL10C3-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 1 C3ipsiSCL1C30.5
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Spinal cord layer 8 C3ipsiSCL8C3-0.5
Nucleus of dorsolateral funiculus C4ipsiNDLFC43
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 1 C4ipsiSCL1C40.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Nucleus of dorsolateral funiculus C5ipsiNDLFC53
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 1 C5ipsiSCL1C50.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Cervical segment 6ipsiCS60.5
Nucleus of dorsolateral funiculus C6ipsiNDLFC63
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 1 C6ipsiSCL1C60.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Cervical segment 7ipsiCS70.5
Nucleus of dorsolateral funiculus C7ipsiNDLFC73
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 1 C7ipsiSCL1C70.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 8 C7ipsiSCL8C7-0.5
Cervical segment 8ipsiCS80.5
Nucleus of dorsolateral funiculus C8ipsiNDLFC83
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 1 C8ipsiSCL1C80.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layer 8 C8ipsiSCL8C8-0.5
Thoracal segment 1ipsiT1-0.5
Nucleus of dorsolateral funiculus T1ipsiNDLFT13
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 1 T1ipsiSCL1T10.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Nucleus of dorsolateral funiculus T2ipsiNDLFT23
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 1 T2ipsiSCL1T20.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Nucleus of dorsolateral funiculus T3ipsiNDLFT33
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 1 T3ipsiSCL1T30.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Nucleus of dorsolateral funiculus T4ipsiNDLFT43
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 1 T4ipsiSCL1T40.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Nucleus of dorsolateral funiculus T5ipsiNDLFT53
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 1 T5ipsiSCL1T50.5
Spinal cord layer 7 T5ipsiSCL7T5-0.5
Spinal cord layer 8 T5ipsiSCL8T5-0.5
Nucleus of dorsolateral funiculus T6ipsiNDLFT63
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 1 T6ipsiSCL1T60.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Nucleus of dorsolateral funiculus T7ipsiNDLFT73
Area X T7ipsiSCL10T7-0.5
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Spinal cord layer 1 T7ipsiSCL1T70.5
Spinal cord layer 7 T7ipsiSCL7T7-0.5
Spinal cord layer 8 T7ipsiSCL8T7-0.5
Nucleus of dorsolateral funiculus T8ipsiNDLFT83
Area X T8ipsiSCL10T8-0.5
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Spinal cord layer 1 T8ipsiSCL1T80.5
Spinal cord layer 7 T8ipsiSCL7T8-0.5
Spinal cord layer 8 T8ipsiSCL8T8-0.5
Nucleus of dorsolateral funiculus T9ipsiNDLFT93
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 1 T9ipsiSCL1T90.5
Spinal cord layer 7 T9ipsiSCL7T9-0.5
Spinal cord layer 8 T9ipsiSCL8T9-0.5
Nucleus of dorsolateral funiculus T10ipsiNDLFT103
Area X T10ipsiSCL10T10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 1 T10ipsiSCL1T100.5
Spinal cord layer 7 T10ipsiSCL7T10-0.5
Spinal cord layer 8 T10ipsiSCL8T10-0.5
Nucleus of dorsolateral funiculus T11ipsiNDLFT113
Area X T11ipsiSCL10T11-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 1 T11ipsiSCL1T110.5
Spinal cord layer 7 T11ipsiSCL7T11-0.5
Spinal cord layer 8 T11ipsiSCL8T11-0.5
Nucleus of dorsolateral funiculus T12ipsiNDLFT123
Area X T12ipsiSCL10T12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 1 T12ipsiSCL1T120.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Spinal cord layer 8 T12ipsiSCL8T12-0.5
Nucleus of dorsolateral funiculus T13ipsiNDLFT133
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 1 T13ipsiSCL1T130.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Lumbar segmentsipsiLSeg-0.5
Lateral spinal nucleus L1ipsiLSpL10.5
Nucleus of dorsolateral funiculus L1ipsiNDLFL13
Area X L1ipsiSCL10L13
Spinal cord layer 5 L1ipsiSCL5L11
Spinal cord layer 1 L1ipsiSCL1L10.5
Spinal cord layer 7 L1ipsiSCL7L13
Spinal cord layer 8 L1ipsiSCL8L13
Lateral spinal nucleus L2ipsiLSpL20.5
Nucleus of dorsolateral funiculus L2ipsiNDLFL23
Area X L2ipsiSCL10L23
Spinal cord layer 5 L2ipsiSCL5L21
Spinal cord layer 1 L2ipsiSCL1L20.5
Spinal cord layer 7 L2ipsiSCL7L23
Spinal cord layer 8 L2ipsiSCL8L23
Lateral spinal nucleus L3ipsiLSpL30.5
Nucleus of dorsolateral funiculus L3ipsiNDLFL33
Area X L3ipsiSCL10L33
Spinal cord layer 5 L3ipsiSCL5L31
Spinal cord layer 1 L3ipsiSCL1L30.5
Spinal cord layer 7 L3ipsiSCL7L33
Spinal cord layer 8 L3ipsiSCL8L33
Lateral spinal nucleus L4ipsiLSpL40.5
Nucleus of dorsolateral funiculus L4ipsiNDLFL43
Area X L4ipsiSCL10L43
Spinal cord layer 5 L4ipsiSCL5L41
Spinal cord layer 1 L4ipsiSCL1L40.5
Spinal cord layer 7 L4ipsiSCL7L43
Spinal cord layer 8 L4ipsiSCL8L43
Lateral spinal nucleus L5ipsiLSpL50.5
Nucleus of dorsolateral funiculus L5ipsiNDLFL53
Area X L5ipsiSCL10L53
Spinal cord layer 5 L5ipsiSCL5L51
Spinal cord layer 1 L5ipsiSCL1L50.5
Spinal cord layer 7 L5ipsiSCL7L53
Spinal cord layer 8 L5ipsiSCL8L53
Lumbar segment 6ipsiL60.5
Lateral spinal nucleus L6ipsiLSpL60.5
Nucleus of dorsolateral funiculus L6ipsiNDLFL63
Area X L6ipsiSCL10L63
Spinal cord layer 5 L6ipsiSCL5L61
Spinal cord layer 1 L6ipsiSCL1L60.5
Spinal cord layer 7 L6ipsiSCL7L63
Spinal cord layer 8 L6ipsiSCL8L63
Sacral segment 1ipsiSa10.5
Lateral spinal nucleus S1ipsiLSpS10.5
Area X S1ipsiSCL10S13
Spinal cord layer 5 S1ipsiSCL5S11
Spinal cord layer 1 S1ipsiSCL1S10.5
Spinal cord layer 7 S1ipsiSCL7S13
Spinal cord layer 8 S1ipsiSCL8S13
Sacral segment 2ipsiSa20.5
Lateral spinal nucleus S2ipsiLSpS20.5
Area X S2ipsiSCL10S23
Spinal cord layer 5 S2ipsiSCL5S21
Spinal cord layer 1 S2ipsiSCL1S20.5
Spinal cord layer 7 S2ipsiSCL7S23
Spinal cord layer 8 S2ipsiSCL8S23
Lateral spinal nucleus S3ipsiLSpS30.5
Area X S3ipsiSCL10S33
Spinal cord layer 5 S3ipsiSCL5S31
Spinal cord layer 1 S3ipsiSCL1S30.5
Spinal cord layer 7 S3ipsiSCL7S33
Spinal cord layer 8 S3ipsiSCL8S33
Lateral spinal nucleus S4ipsiLSpS40.5
Area X S4ipsiSCL10S43
Spinal cord layer 5 S4ipsiSCL5S41
Spinal cord layer 1 S4ipsiSCL1S40.5
Spinal cord layer 7 S4ipsiSCL7S43
Spinal cord layer 8 S4ipsiSCL8S43
Central graycontraCG-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Deep gray layer of the superior colliculuscontraDpG-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Interposed cerebellar nucleicontraICN3
Lateral cerebellar nucleuscontraCERL3
Medial cerebellar nucleuscontraMed1
Locus coeruleus dorsal partcontraLCD2
Locus coeruleus rostral partcontraLCRo1
Pontomesencephalic graycontraPoMG-0.5
Pontine reticular nucleuscontraPRN3
Gigantocellular reticular nucleuscontraGi-0.5
Medial medullary reticular nucleuscontraMMdD0.5
Parvicellular reticular nucleuscontraPCRt-0.5
C1 adrenaline cellscontraC1-10
Mesencephalic trigeminal nucleuscontraMe5-0.5
Principal sensory trigeminal nucleuscontraPr52
Principal sensory trigeminal nucleus dorsal partcontraPr5D1
Spinal trigeminal nucleuscontraSp5nc-0.5
Spinal trigeminal nucleus caudal part ventral part layer 4contraSp5CVL4-0.5
Spinal trigeminal nucleus caudal part ventral part layer 5contraSp5CVL5-0.5
Spinal trigeminal nucleus caudal part ventral part layer 3contraSp5CVL3-0.5
Spinal trigeminal nucleus caudal part ventral part layer 1contraSp5CVL1-0.5
Spinal trigeminal nucleus caudal part ventral part layer 2contraSp5CVL2-0.5
Dorsal cochlear nucleuscontraDC-2
Vestibular nucleicontraVnc-0.5
Nucleus of the solitary tractcontraSol1
Rostral ventrolateral medullacontraRVLM-10
Posterolateral hypothalamuscontraPLHY-0.5
Anterior hypothalamic nucleuscontraAHn-2
Medial terminal nucleus of the accessory optic tractcontraMT-2
Cerebral cortex layer 5contraCCL5-0.5
Agranular insular cortex layer 5contraAIL50.5
Agranular insular cortex ventral part jaw movement area layer 5contraAIVjmL5-0.5
Forelimb motor cortexcontraFMCx3
Caudal forelimb motor areacontraCFMA3
Lateral part of the granular cortex of forelimb motor regionscontraLFMCx3
Primary motor jaw area layer 5contraJMCxL53
Whiskers motor cortexcontraWMCx3
Whisker motor cortex A1contraWMCxA13
Primary somatosensory cortex face regioncontraS1FR4
Primary somatosensory cortex face region layer 5contraS1FRL5-0.5
Nucleus of dorsolateral funiculus C1contraNDLFC11
Spinal cord layer 1 C1contraSCL1C10.5
Nucleus of dorsolateral funiculus C2contraNDLFC21
Spinal cord layer 1 C2contraSCL1C20.5
Nucleus of dorsolateral funiculus C3contraNDLFC31
Spinal cord layer 1 C3contraSCL1C30.5
Nucleus of dorsolateral funiculus C4contraNDLFC41
Spinal cord layer 1 C4contraSCL1C40.5
Nucleus of dorsolateral funiculus C5contraNDLFC51
Spinal cord layer 1 C5contraSCL1C50.5
Cervical segment 6contraCS61
Nucleus of dorsolateral funiculus C6contraNDLFC61
Spinal cord layer 1 C6contraSCL1C60.5
Cervical segment 7contraCS71
Nucleus of dorsolateral funiculus C7contraNDLFC71
Spinal cord layer 1 C7contraSCL1C70.5
Cervical segment 8contraCS81
Nucleus of dorsolateral funiculus C8contraNDLFC81
Spinal cord layer 1 C8contraSCL1C80.5
Thoracal segment 1contraT11
Nucleus of dorsolateral funiculus T1contraNDLFT11
Spinal cord layer 1 T1contraSCL1T10.5
Nucleus of dorsolateral funiculus T2contraNDLFT21
Spinal cord layer 1 T2contraSCL1T20.5
Nucleus of dorsolateral funiculus T3contraNDLFT31
Spinal cord layer 1 T3contraSCL1T30.5
Nucleus of dorsolateral funiculus T4contraNDLFT41
Spinal cord layer 1 T4contraSCL1T40.5
Nucleus of dorsolateral funiculus T5contraNDLFT51
Spinal cord layer 1 T5contraSCL1T50.5
Nucleus of dorsolateral funiculus T6contraNDLFT61
Spinal cord layer 1 T6contraSCL1T60.5
Nucleus of dorsolateral funiculus T7contraNDLFT71
Spinal cord layer 1 T7contraSCL1T70.5
Nucleus of dorsolateral funiculus T8contraNDLFT81
Spinal cord layer 1 T8contraSCL1T80.5
Nucleus of dorsolateral funiculus T9contraNDLFT91
Spinal cord layer 1 T9contraSCL1T90.5
Nucleus of dorsolateral funiculus T10contraNDLFT101
Spinal cord layer 1 T10contraSCL1T100.5
Nucleus of dorsolateral funiculus T11contraNDLFT111
Spinal cord layer 1 T11contraSCL1T110.5
Nucleus of dorsolateral funiculus T12contraNDLFT121
Spinal cord layer 1 T12contraSCL1T120.5
Nucleus of dorsolateral funiculus T13contraNDLFT131
Spinal cord layer 1 T13contraSCL1T130.5
Lateral spinal nucleus L1contraLSpL11
Nucleus of dorsolateral funiculus L1contraNDLFL11
Area X L1contraSCL10L13
Spinal cord layer 5 L1contraSCL5L13
Spinal cord layer 1 L1contraSCL1L11
Spinal cord layer 7 L1contraSCL7L13
Spinal cord layer 8 L1contraSCL8L13
Lateral spinal nucleus L2contraLSpL21
Nucleus of dorsolateral funiculus L2contraNDLFL21
Area X L2contraSCL10L23
Spinal cord layer 5 L2contraSCL5L23
Spinal cord layer 1 L2contraSCL1L21
Spinal cord layer 7 L2contraSCL7L23
Spinal cord layer 8 L2contraSCL8L23
Lumbar segment 3contraL30.5
Lateral spinal nucleus L3contraLSpL31
Nucleus of dorsolateral funiculus L3contraNDLFL31
Area X L3contraSCL10L33
Spinal cord layer 5 L3contraSCL5L33
Spinal cord layer 1 L3contraSCL1L31
Spinal cord layer 7 L3contraSCL7L33
Spinal cord layer 8 L3contraSCL8L33
Lumbar segment 4contraL40.5
Lateral spinal nucleus L4contraLSpL41
Nucleus of dorsolateral funiculus L4contraNDLFL41
Area X L4contraSCL10L43
Spinal cord layer 5 L4contraSCL5L43
Spinal cord layer 1 L4contraSCL1L41
Spinal cord layer 7 L4contraSCL7L43
Spinal cord layer 8 L4contraSCL8L43
Lumbar segment 5contraL50.5
Lateral spinal nucleus L5contraLSpL51
Nucleus of dorsolateral funiculus L5contraNDLFL51
Area X L5contraSCL10L53
Spinal cord layer 5 L5contraSCL5L53
Spinal cord layer 1 L5contraSCL1L51
Spinal cord layer 7 L5contraSCL7L53
Spinal cord layer 8 L5contraSCL8L53
Lumbar segment 6contraL60.5
Lateral spinal nucleus L6contraLSpL61
Nucleus of dorsolateral funiculus L6contraNDLFL61
Area X L6contraSCL10L63
Spinal cord layer 5 L6contraSCL5L63
Spinal cord layer 1 L6contraSCL1L61
Spinal cord layer 7 L6contraSCL7L63
Spinal cord layer 8 L6contraSCL8L63
Sacral segment 1contraSa10.5
Lateral spinal nucleus S1contraLSpS11
Area X S1contraSCL10S13
Spinal cord layer 5 S1contraSCL5S13
Spinal cord layer 1 S1contraSCL1S11
Spinal cord layer 7 S1contraSCL7S13
Spinal cord layer 8 S1contraSCL8S13
Sacral segment 2contraSa20.5
Lateral spinal nucleus S2contraLSpS21
Area X S2contraSCL10S23
Spinal cord layer 5 S2contraSCL5S23
Spinal cord layer 1 S2contraSCL1S21
Spinal cord layer 7 S2contraSCL7S23
Spinal cord layer 8 S2contraSCL8S23
Lateral spinal nucleus S3contraLSpS31
Area X S3contraSCL10S33
Spinal cord layer 5 S3contraSCL5S33
Spinal cord layer 1 S3contraSCL1S31
Spinal cord layer 7 S3contraSCL7S33
Spinal cord layer 8 S3contraSCL8S33
Lateral spinal nucleus S4contraLSpS41
Area X S4contraSCL10S43
Spinal cord layer 5 S4contraSCL5S43
Spinal cord layer 1 S4contraSCL1S41
Spinal cord layer 7 S4contraSCL7S43
Spinal cord layer 8 S4contraSCL8S43
Anterior ethmoidal nerveipsiaemn-0.5
Nerve branch to the anterior belly of the digastricus muscleipsinbabd1
Esophageal nervecontraesoph-2
Peridontal tissueipsiOrgTeethP-0.5
Posterior portion of the tongueipsiOrgOCTpp-0.5
Muscle spindles of the masseter muscleipsiMuscMassSpi-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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