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Rat connectome



Medial entorhinal cortex layer 5 left


Abbreviation
MEntLyL5
Color       
Superior regionsMedial entorhinal cortex deep layers

SynonymsAbbr.Language
Medial entorhinal cortex layer 5MEntLyL5 

SubregionsSide
Medial entorhinal cortex layer 5 horizontal neuronsleft
Medial entorhinal cortex layer 5 pyramidal neuronsleft
Medial entorhinal cortex layer 5aleft
Medial entorhinal cortex layer 5 multipolar cellsleft
Medial entorhinal cortex layer 5 deep layer pyramid cellsleft
Medial entorhinal cortex layer 5 inverted pyramid cellsleft
Medial entorhinal cortex layer 5 vertical bipolar cellsleft
Medial entorhinal cortex deep layer 5left

Output to

NameSideAbbr.WeightDetails
Anteromedial thalamic nucleus lateral partipsiAML1
Anteroventral thalamic nucleus dorsal partipsiAVDo2
Anteroventral thalamic nucleus rostral partipsiAVRo2
Anteroventral thalamic nucleus ventral partipsiAVv1
Laterodorsal thalamic nucleusipsiLD2
Angular bundleipsiang0
Dentate gyrus molecular layeripsiDGmL-0.5
Inner molecular layer of the dentate gyrusipsiIMLDG-0.5
Outer molecular layer of the dentate gyrusipsiOML-0.5
Middle third of the molecular layer of the dentate gyrusipsiDGmmtL3
Granule cell layer of the dentate gyrusipsiDGgL-0.5
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Hilus of the dentate gyrusipsiHil-0.5
Presubiculum layer 2ipsiPrSL2-0.5
Presubiculum layer 3ipsiPrSL3-0.5
ParasubiculumipsiPaS0.5
Entorhinal cortex layer 5ipsiEntL5-0.5
Entorhinal cortex layer 3ipsiEntL3-0.5
Entorhinal cortex layer 4ipsiEntL4-0.5
Entorhinal cortex superficial layer 1ipsiEntsL10
Entorhinal cortex layer 2ipsiEntL2-0.5
Entorhinal cortex superficial layer 2ipsiEntsL20
Lateral entorhinal cortex layer 1ipsiLEntL1-0.5
Lateral entorhinal cortex layer 2ipsiLEntL2-0.5
Lateral entorhinal cortex layer 3ipsiLEntL3-0.5
Lateral entorhinal cortex layer 5ipsiLEntL5-0.5
Medial entorhinal cortex layer 1ipsiMEntLyL1-0.5
Medial entorhinal cortex layer 2ipsiMEntLyL2-0.5
Medial entorhinal cortex border of layer 1 and layer 2ipsiMEntL1b2-0.5
Medial entorhinal cortex layer 3ipsiMEntLyL3-0.5
Medial entorhinal cortex layer 4ipsiMEntLyL4-0.5
Medial entorhinal cortex layer 6ipsiMEntLyL6-0.5
Retrosplenial regionsipsiRS0.5
Parietal cortex posterior area lateral portionipsiParPL-0.5
Parietal cortex posterior area medial portionipsimPPC1
Postrhinal cortexipsiPOR3
Dentate gyruscontraDG0
Parietal cortex posterior area medial portioncontramPPC1

Input from

NameSideAbbr.WeightDetails
Magnocellular basal forebrain neuronal complexipsiMBFNC2
Nucleus of the horizontal limb of the diagonal bandipsiHDB1.5
Nucleus of the vertical limb of the diagonal bandipsiVDB1.5
Medial septal nucleusipsiMS1.5
Lateral hypothalamic areaipsiLH1.5
Anterodorsal thalamic nucleus dorsomedial partipsiADdm2
Anteromedial thalamic nucleus rostral partipsiAMr2
Anteroventral thalamic nucleus central partipsiAVCe1
Anteroventral thalamic nucleus dorsal partipsiAVDo1.5
Parafascicular thalamic nucleusipsiPF1.5
Reuniens thalamic nucleusipsiRe2
Basolateral amygdaloid nucleusipsiBL1.5
ClaustrumipsiCl2
Ventral part of claustrumipsiVCl2
Ammon hornipsiAmH2
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA1 of hippocampus temporal poleipsiCA1tp-0.5
SubiculumipsiS2
Subiculum distal partipsiSdi-0.5
Molecular layer of the subiculumipsiSumo-0.5
Subiculum stratum pyramidaleipsiSupyr-0.5
Subiculum midproximodistal extentipsiSmpde-0.5
PresubiculumipsiPrS2
Presubiculum layer 2ipsiPrSL23
Presubiculum layer 3ipsiPrSL33
Presubiculum deep layersipsiPrSDL3
Presubiculum layer 5ipsiPrSL53
Presubiculum layer 6ipsiPrSL63
ParasubiculumipsiPaS2
Lateral entorhinal cortex layer 1ipsiLEntL1-0.5
Lateral entorhinal cortex layer 2ipsiLEntL2-0.5
Lateral entorhinal cortex layer 2 stellate neuronsipsiLEntL2sn-0.5
Lateral entorhinal cortex layer 3ipsiLEntL3-0.5
Lateral entorhinal cortex layer 3 pyramidal neuronsipsiLEntL3py-0.5
Lateral entorhinal cortex layer 4ipsiLEntL4-0.5
Lateral entorhinal cortex layer 5ipsiLEntL5-0.5
Lateral entorhinal cortex layer 6ipsiLEntL6-0.5
Medial entorhinal cortex layer 1ipsiMEntLyL1-0.5
Medial entorhinal cortex layer 2ipsiMEntLyL2-0.5
Medial entorhinal cortex layer 2 stellate neuronsipsiMEntLyL2st1
Medial entorhinal cortex layer 3ipsiMEntLyL3-0.5
Medial entorhinal cortex layer 3 pyramidal neuronsipsiMEntLyL3py-0.5
Medial sector of layer 3 of the medial entorhinal cortexipsiMEntLyL3ms1
Medial entorhinal cortex layer 4ipsiMEntLyL4-0.5
Medial entorhinal cortex layer 6ipsiMEntLyL63
Dorsoventral entorhinal cortex layer 4ipsiEntDVL4-0.5
Dorsoventral entorhinal cortex layer 5ipsiEntDVL5-0.5
Dorsoventral entorhinal cortex layer 6ipsiEntDVL6-0.5
Retrosplenial cortexipsiRSCx-0.5
Area 29 rostral partipsiA29r-0.5
Area 30 intermediate caudal partipsiA30ic-0.5
Dorsal anterior cingulate cortex deep layersipsiDACCdL-0.5
Postrhinal cortexipsiPOR2
Medial orbital cortexipsiMO1.5
PresubiculumcontraPrS1
Presubiculum layer 5contraPrSL50
Presubiculum layer 6contraPrSL60

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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