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Rat connectome

Field CA1 of hippocampus layer stratum pyramidale left

Abbreviation	CA1pyr
Color
Superior regions	Field CA1 of hippocampus layers deep layers

Synonyms	Abbr.	Language
Field CA1 of hippocampus layer stratum pyramidale	CA1pyr
Field CA1 of hippocampus layer stratum pyramidale	CA1L3sp

Subregions	Side
Field CA1 of hippocampus layer stratum pyramidal cells	left
Field CA1 of hippocampus layer stratum pyramidale deep	left
Field CA1 of hippocampus layer stratum pyramidale superficial	left
Field CA1 of hippocampus layer stratum pyramidale double projections cells	left

Output to

Name	Side	Abbr.	Weight
Dorsal endopiriform nucleus	ipsi	DEn	-0.5
Medial septal nucleus	ipsi	MS	0.5
Dorsal tenia tecta	ipsi	DTT	-0.5
Peduncular part of lateral hypothalamus	ipsi	PLH	-0.5
Arcuate nucleus	ipsi	Arc	1
Basolateral amygdaloid nucleus	ipsi	BL	-0.5
Anterior basolateral nucleus	ipsi	BLA	-0.5
Posterior basolateral nucleus	ipsi	BLP	-0.5
Lateral amygdaloid nucleus	ipsi	LA	-0.5
Dorsolateral part of the lateral nucleus	ipsi	LaDL	-0.5
Bed nucleus of the stria terminalis intraamygdaloid division	ipsi	BSTIA	-0.5
Central amygdaloid nucleus lateral division capsular part	ipsi	CeC	-0.5
Amygdalopiriform transition area	ipsi	APir	-0.5
Posterolateral cortical nucleus	ipsi	PLCo	-0.5
Posteromedial cortical nucleus	ipsi	PMCo	-0.5
Accumbens nucleus shell	ipsi	AcbSh	-0.5
Medial accumbens shell ventrolateral part	ipsi	AcbShmvL	2
Medial accumbens	ipsi	AcbM	-0.5
Ventromedial accumbens	ipsi	AcbVM	-0.5
Ventral striatum	ipsi	CPuv	-0.5
Dorsal hippocampus	ipsi	HIPPd	1
Dentate gyrus molecular layer	ipsi	DGmL	-0.5
Granule cell layer of the dentate gyrus	ipsi	DGgL	-0.5
Field CA1 of hippocampus dorsal layer stratum oriens	ipsi	CA1dL2so	1
Field CA1 of hippocampus dorsal layer stratum pyramidale	ipsi	CA1dL3sp	1
Field CA1 of hippocampus layer stratum radiatum	ipsi	CA1rad	-0.5
Field CA1 of hippocampus layer stratum pyramidale	ipsi	CA1pyr	-0.5
Field CA1 of hippocampus layer stratum oriens	ipsi	CA1or	-0.5
Subiculum	ipsi	S	-0.5
Molecular layer of the subiculum	ipsi	Sumo	-0.5
Subiculum stratum pyramidale	ipsi	Supyr	-0.5
Subiculum layer 5	ipsi	SuL5	-0.5
Presubiculum	ipsi	PrS	-0.5
Presubiculum layer 2	ipsi	PrSL2	-0.5
Presubiculum layer 3	ipsi	PrSL3	-0.5
Presubiculum layer 4	ipsi	PrSL4	-0.5
Presubiculum layer 5	ipsi	PrSL5	-0.5
Presubiculum layer 6	ipsi	PrSL6	-0.5
Parasubiculum	ipsi	PaS	-0.5
Parasubiculum layer 2	ipsi	PaSL2	-0.5
Parasubiculum layer 3	ipsi	PaSL3	-0.5
Entorhinal cortex	ipsi	Ent	-0.5
Caudomedial entorhinal cortex	ipsi	CEnt	-0.5
Dorsolateral entorhinal cortex	ipsi	DLEnt	-0.5
Dorsal intermediate entorhinal cortex	ipsi	DIEnt	-0.5
Lateral entorhinal cortex layer 1	ipsi	LEntL1	-0.5
Lateral entorhinal cortex layer 2	ipsi	LEntL2	-0.5
Lateral entorhinal cortex layer 3	ipsi	LEntL3	-0.5
Lateral entorhinal cortex layer 4	ipsi	LEntL4	-0.5
Lateral entorhinal cortex layer 5	ipsi	LEntL5	-0.5
Lateral entorhinal cortex layer 6	ipsi	LEntL6	-0.5
Medial entorhinal cortex	ipsi	MEnt	-0.5
Medial entorhinal cortex layer 1	ipsi	MEntLyL1	-0.5
Medial entorhinal cortex layer 2	ipsi	MEntLyL2	-0.5
Medial entorhinal cortex layer 3	ipsi	MEntLyL3	-0.5
Medial entorhinal cortex layer 4	ipsi	MEntLyL4	-0.5
Medial entorhinal cortex layer 5	ipsi	MEntLyL5	-0.5
Medial entorhinal cortex layer 6	ipsi	MEntLyL6	-0.5
Ventral intermediate entorhinal cortex	ipsi	VIEnt	-0.5
Piriform cortex	ipsi	Pir	-0.5
Retrosplenial dysgranular cortex	ipsi	RSdys	0.5
Retrosplenial granular cortex	ipsi	RSGra	1
Temporal association cortex 1	ipsi	TeA	-0.5
Perirhinal cortex	ipsi	A35	-0.5
Ectorhinal cortex	ipsi	A36	-0.5
Lateral prefrontal cortex	ipsi	lPFC	-0.5
Medial prefrontal cortex	ipsi	mPFC	2
Ventral medial prefrontal cortex	ipsi	vmPFC	-0.5
Anterior olfactory nucleus posterior part	ipsi	AONp	-0.5
Septal region	ipsi	SER	3
Lateral septal nucleus dorsal part	ipsi	LSD	-0.5
Lateral septal nucleus intermediate part	ipsi	LSI	-0.5
Lateral septal nucleus ventral part	ipsi	LSV	-0.5
Septofimbrial nucleus	ipsi	SFi	-0.5
Hippocampus	contra	HIPP	0
Field CA1 of hippocampus	contra	CA1	3

Input from

Name	Side	Abbr.	Weight
Ventral tegmental area A10	ipsi	VTA	2
Midline reticular formation	ipsi	MiRF	2
Median raphe nucleus	ipsi	MnR	2
Medial septum dorsal band complex	ipsi	MSDB	-0.5
Diagonal band of Broca	ipsi	DBB	-0.5
Nucleus of the horizontal limb of the diagonal band	ipsi	HDB	-0.5
Nucleus of the vertical limb of the diagonal band	ipsi	VDB	1
Medial septal nucleus	ipsi	MS	1
Substantia innominata	ipsi	SI	-0.5
Medial preoptic area	ipsi	MPA	-0.5
Accessory basal nucleus magnocellular division	ipsi	ABm	0.5
Basal nucleus magnocellular part	ipsi	Bmc	1
Basal nucleus parvicellular part lateral portion	ipsi	BpcL	1
Posterior basolateral nucleus	ipsi	BLP	2
Anterior basomedial nucleus	ipsi	BMA	1
Posterior basomedial nucleus	ipsi	BMP	1.5
Ventromedial part of the lateral nucleus	ipsi	LaVM	1
Amygdalopiriform transition area medial part	ipsi	APirM	1
Anterior amygdaloid area	ipsi	AA	-0.5
Amygdalohippocampal area	ipsi	AHi	2.5
Field CA1 of hippocampus	ipsi	CA1	0
Field CA1 of hippocampus layer stratum radiatum non-principal cells	ipsi	CA1L5srnpc	-0.5
Field CA1 of hippocampus layer stratum pyramidale	ipsi	CA1pyr	-0.5
Field CA1 of hippocampus layer stratum pyramidale double projections cells	ipsi	CA1L3spdpc	-0.5
Field CA1 of hippocampus layer stratum oriens double projection cells	ipsi	CA1L2sodpc	-0.5
Field CA1 of hippocampus layer stratum oriens retrohippocampal neurons	ipsi	CA1L2sorhn	-0.5
Field CA1 of hippocampus ventral layer stratum pyramidal cells	ipsi	CA1vL3spc	-0.5
Field CA2 of hippocampus layer stratum pyramidale secondary axon of pyramidal cells	ipsi	CA2L3sapy	-0.5
Field CA3 of hippocampus	ipsi	CA3	-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neurons	ipsi	CA3L3spy	3
Field CA3a of hippocampus pyramidal cell layer secondary axon of pyramidal cells	ipsi	CA3aLsapyc	-0.5
Molecular layer of the subiculum	ipsi	Sumo	-0.5
Subiculum stratum pyramidale	ipsi	Supyr	-0.5
Entorhinal cortex	ipsi	Ent	-0.5
Intermediate entorhinal cortex layer 2b	ipsi	IEntL2b	-0.5
Lateral entorhinal cortex	ipsi	LEnt	1
Medial entorhinal cortex	ipsi	MEnt	1
Medial entorhinal cortex superficial layers	ipsi	MEntLyS	-0.5
Medial entorhinal cortex layer 2b	ipsi	MEntLyL2b	-0.5
Perirhinal cortex	ipsi	A35	1
Septal region	ipsi	SER	1
Lateral septal nucleus	ipsi	LS	-0.5
Ventral tegmental area A10	contra	VTA	1
Hippocampus	contra	HIPP	1
Anterior one-third hippocampal formation	contra	AHCfot	2

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong