University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Field CA1 of hippocampus left


Abbreviation
CA1
Color       
Superior regionsAmmon horn

SynonymsAbbr.Language
Ammons horn field CA1  
Region I of hippocampus proper  
CA1 field of the hippocampus  
Field CA1 of hippocampusCA1Eng
Regio superior of the hippocampus Eng

SubregionsSide
Distal field CA1 of hippocampusleft
Field CA1 of hippocampus anterior partleft
Field CA1 of hippocampus caudal partleft
Field CA1 of hippocampus central partleft
Field CA1 of hippocampus dorsalleft
Field CA1 of hippocampus juxtasubicular partleft
Field CA1 of hippocampus layersleft
Field CA1 of hippocampus medial partleft
Field CA1 of hippocampus mid levelleft
Field CA1 of hippocampus NPY neuron populationleft
Field CA1 of hippocampus posterior partleft
Field CA1 of hippocampus rostral partleft
Field CA1 of hippocampus rostrocaudal levelsleft
Field CA1 of hippocampus temporal partleft
Field CA1 of hippocampus ventral partleft
Field CA1 of hippocampus ventrocaudal subfieldleft
Field CA1a of hippocampusleft
Field CA1b of hippocampusleft
Field CA1c of hippocampusleft
Portion of CA1 located adjacent to the ventral subiculumleft
Proximal field CA1 of hippocampusleft
CA1 domainsleft
Field CA1 of hippocampus ventral poleleft
Field CA1 of hippocampus adjacent to the dorsal subiculumleft
Field CA1 of hippocampus cell populationsleft
Field CA1 of hippocampus GABA positiveleft
Field CA1 of hippocampus splenial one-thirdleft
Field CA1 of hippocampus septal partleft
Mid-proximodistal portion of the field CA1 of the hippocampusleft
Alveus border of field CA1 of hippocampusleft
Field CA1 of hippocampus neuronsleft
Field CA1 in ventral portion of the main retrocommissural hippocampusleft
Intermediate septotemporal CA1 regionleft
Field CA1 of hippocampus rostroventral partleft
Field CA1 of hippocampus middle portionleft
Field CA1 of hippocampus lateral part left
Field CA1 of hippocampus dorsoventral levelleft

Output to

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL3
Pedunculopontine tegmental nucleusipsiPPTg-10
Paraflocculus ventral partipsiPFlv1
FlocculusipsiFl1
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the horizontal limb of the diagonal band medial partipsiHDBm1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS3
Substantia innominataipsiSI2
Ventral tenia tectaipsiVTT-0.5
Ventral tenia tecta superior partipsiSVTT-0.5
Lateral hypothalamic area anterior partipsiLHAa1
Lateral hypothalamic area posterior partipsiLHAp0
Lateral hypothalamic nucleusipsiLHN-0.5
Tuberal region of lateral hypothalamusipsiTuLH0
Medial zoneipsiMHA1
Anterior hypothalamic area inferior partipsiAHAI-0.5
Anterior hypothalamic area posterior partipsiAHAP-0.5
Anterior hypothalamic nucleus dorsomedial partipsiAHndm1
Dorsomedial hypothalamic nucleus anterior partipsiDMA0
Dorsomedial nucleus posterior partipsiDMHp0
Posterior hypothalamic nucleusipsiPH-0.5
Subparaventricular zone dorsal one thirdipsiSuPZot1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus central partipsiVMHC-1
Ventromedial hypothalamic nucleus lateral partipsiVMHL-0.5
Ventromedial hypothalamic nucleus shellipsiVMS-1
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM1
Paraventricular hypothalamic nucleusipsiPa0
Suprachiasmatic nucleusipsiSCh3
Medial mammillary nucleus caudomedial partipsiMMnCM-1
Medial mammillary nucleus rostrolateral partipsiMMnRL-1
Premammillary nucleus dorsal partipsiPMD1
Premammillary nucleus ventral partipsiPMV-0.5
Anterior group of the dorsal thalamusipsiATN0
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleusipsiAM0
Anteroventral thalamic nucleusipsiAV0
Mediodorsal thalamic nucleus lateral partipsiMDL-0.5
Mediodorsal thalamic nucleus medial partipsiMDM-10
Paratenial thalamic nucleusipsiPT0
Midline group of the dorsal thalamus ventral regionsipsiMTNv-0.5
RetinaipsiRET1.5
Angular bundleipsiang-2
External capsuleipsiec-2
Amygdaloid complexipsiAC1
Basal nucleusipsiBnc3
Accessory basal nucleusipsiAB2
Basal nucleus anterior subdivisionipsiBncA-0.5
Basal nucleus posterior partipsiBncP-0.5
Basolateral amygdaloid nucleusipsiBL4
Anterior basolateral nucleusipsiBLA4
Anterior basolateral nucleus dorsolateral partipsiBLAdl1
Posterior basolateral nucleusipsiBLP4
Posterior basolateral nucleus rostrodorsal portionipsiBLPRD1
Ventral basolateral nucleusipsiBLV2
Basomedial amygdaloid nucleusipsiBM3
Anterior basomedial nucleusipsiBMA1
Anterior basomedial nucleus caudal partipsiBMAc-1
Posterior basomedial nucleusipsiBMP2.5
Posterior basomedial nucleus medial partipsiBMPm-1
Lateral amygdaloid nucleusipsiLA1
Ventrolateral part of the lateral nucleusipsiLaVL1
Ventromedial part of the lateral nucleusipsiLaVM1
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD2
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL2
Bed nucleus of the stria terminalis fusiform partipsiFu1
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus intermediate divisionipsiCeI-0.5
Central partipsiCeLc-0.5
Central amygdaloid nucleus medial divisionipsiCeM1
Amygdalopiriform transition areaipsiAPir1
Anterior amygdaloid areaipsiAA1
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp3
Posterolateral cortical nucleusipsiPLCo2
Nucleus of the lateral olfactory tractipsiLOT1
Periamygdaloid complexipsiPAC2
Medial extreme of the caudal periamygdaloid cortexipsiMePACC2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus ventral partipsiMeV1
Amygdalohippocampal areaipsiAHi3
Amygdalohippocampal area rostrolateral partipsiAHirl-1
Posteromedial cortical nucleusipsiPMCo2
Intercalated nuclei of the amygdalaipsiI-1
StriatumipsiSTR-0.5
Accumbens nucleusipsiAc2
Accumbens nucleus anterolateral partipsiAcAL1
Accumbens nucleus coreipsiAcbC2
Medial coreipsiAcbCm-0.5
Accumbens nucleus core caudomedial partipsiAcbCcm-0.5
Rostral pole of the accumbens nucleusipsiAcbRP2
Accumbens nucleus rostrolateral partipsiAcRL-1
Accumbens nucleus shellipsiAcbSh2
Lateral accumbens shellipsiAcbShl1
Medial accumbens shellipsiAcbShm-0.5
Rostral accumbens shellipsiAcbShr-0.5
Ventral shellipsiAcbShv-0.5
Anterior accumbensipsiAcbA1
Caudolateral accumbens nucleusipsiAcbCaL2
Caudomedial accumbensipsiAcbCM-1
Medial accumbensipsiAcbM1.5
Caudate putamenipsiCPu-0.5
Medial striatumipsiCPum2
Ventral striatumipsiCPuv-3
Cerebral cortexipsiCEC3
HippocampusipsiHIPP3
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG-0.5
Hilus of the dentate gyrusipsiHil0
Field CA1 of hippocampusipsiCA12
Field CA1 of hippocampus dorsalipsiCA1d-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad3
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr0
Field CA1 of hippocampus layer stratum pyramidal cellsipsiCA1L3spc3
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
Distal field CA3 of hippocampusipsiDCA30
Field CA3a of hippocampusipsiCA3a0
Field CA3b of hippocampusipsiCA3b-0.5
Field CA3c of hippocampusipsiCA3c-0.5
SubiculumipsiS3
Subiculum distal part layer 1ipsiSdiL10
Subiculum distal part layer 2ipsiSdiL2-0.5
Subiculum distal part layer 3ipsiSdiL3-0.5
Subiculum distal part layer 4ipsiSdiL4-0.5
Subiculum distal part layer 5ipsiSdiL5-0.5
Subiculum distal part layer 6ipsiSdiL6-0.5
Subiculum dorsal partipsiSd3
Subiculum layersipsiSuL-0.5
Molecular layer of the subiculumipsiSumo0
Subiculum stratum radiatumipsiSurad-0.5
Subiculum stratum pyramidaleipsiSupyr-0.5
Alveus of the hippocampusipsialv-0.5
Fimbria fornix regionipsififo-2
Fimbria of the hippocampusipsifi-0.5
Fornixipsif-0.5
Descending column of the fornixipsidcf1
Medial part of the fimbriaipsimfimb-2
Parahippocampal regionipsiPHR-0.5
PresubiculumipsiPrS-0.5
Presubiculum ventral partipsiPrSv-1
ParasubiculumipsiPaS2
Parasubiculum layersipsiPaSL-0.5
Parasubiculum deep layer 1ipsiPaSdL1-0.5
Parasubiculum layer 2ipsiPaSL2-0.5
PostsubiculumipsiPost2
Entorhinal cortexipsiEnt4
Entorhinal cortex deep layersipsiEntdL-0.5
Entorhinal cortex layer 3ipsiEntL31
Entorhinal cortex layer 4ipsiEntL41
Entorhinal cortex white matteripsiEntWM-0.5
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex lateral partipsiLEntLa-1
Lateral entorhinal cortex layer 1ipsiLEntL11
Lateral entorhinal cortex layer 2ipsiLEntL21
Lateral entorhinal cortex layer 5ipsiLEntL53
Lateral entorhinal cortex deep layer 5ipsiLEntL5b-0.5
Lateral entorhinal cortex layer 6ipsiLEntL63
Lateral entorhinal cortex rostromedial partipsiLEntRM-1
Lateral entorhinal cortex ventral partipsiVLEA3
Lateral entorhinal cortex ventromedial partipsiVMEAL3
Medial entorhinal cortex caudolateral partipsiMEntCL-1
Medial entorhinal cortex dorsal partipsiMEntD1
Medial entorhinal cortex layer 1ipsiMEntLyL11
Medial entorhinal cortex layer 2ipsiMEntLyL21
Medial entorhinal cortex layer 5ipsiMEntLyL5-0.5
Medial entorhinal cortex deep layer 5ipsiMEntLyL5b-0.5
Medial entorhinal cortex layer 6ipsiMEntLyL6-0.5
Medial entorhinal cortex rostromedial partipsiMEntRM-1
Medial entorhinal fieldipsiMEntF3
Medial entorhinal field layer 6ipsiMEntFL63
Piriform cortexipsiPir2
Retrosplenial regionsipsiRS1
Retrosplenial dorsalipsiRSd1
Dorsal retrosplenial cortex caudal partipsiRSdc0
Retrosplenial ventral partipsiRSPv3
Retrosplenial ventral aipsiRSv-a1
Retrosplenial dysgranular cortexipsiRSdys-0.5
Retrosplenial granular cortexipsiRSGra1
Retrosplenial granular cortex layer 1ipsiRSGL1-0.5
Cerebrocortical neuronsipsiCCN-0.5
Anterior cingulate cortexipsiACC2
Cingulate cortex area 1ipsiCg1-0.5
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2ipsiCg2-0.5
Cingulate cortex area 2 caudal partipsiCg2c0
Prelimbic cortexipsiPrL4
Prelimbic cortex layer 1ipsiPrLL12
Prelimbic cortex layer 2ipsiPrLL22
Prelimbic cortex layer 3ipsiPrLL32
Prelimbic cortex layer 5ipsiPrLL53
Prelimbic cortex layer 6ipsiPrLL63
Prelimbic cortex ventral partipsiPrLv2
Infralimbic areaipsiiLA-1
Infralimbic cortexipsiIL3
Infralimbic cortex layer 1ipsiILL12
Infralimbic cortex layer 2ipsiILL22
Infralimbic cortex layer 5ipsiILL53
Infralimbic cortex layer 6ipsiILL63
Infralimbic cortex layer 3ipsiILL32
Infralimbic cortex rostral partipsiILR2.5
Infralimbic cortex ventral partipsiILv-0.5
Frontal association cortexipsiFrA1
Parietal cortex posterior area medial portionipsimPPC1
Parietal cortex posterior area dorsal partipsiParPD-0.5
Parietal cortex posterior area dorsal part layer 2ipsiParPDL2-0.5
Parietal cortex posterior area dorsal part layer 3ipsiParPDL3-0.5
Parietal cortex posterior area dorsal part layer 4ipsiParPDL4-0.5
Parietal cortex posterior area dorsal part layer 5ipsiParPDL5-0.5
Ventral temporal association cortexipsiTev1
Agranular insular cortex dorsal part superficial layersipsiAIDsL2
Perirhinal cortexipsiA351
Dorsal peduncular cortexipsiDP-0.5
Prefrontal cortexipsiPFC-3
Somatomotoric regionsipsiSMR1
Medial prefrontal cortexipsimPFC2
Medial prefrontal cortex layer 5ipsimPFCL5-0.5
Medial prefrontal cortex layer 6ipsimPFCL6-0.5
Medial agranular prefrontal cortexipsiAGm-0.5
Orbital cortexipsiOrC1
Lateral orbital cortexipsiLO-0.5
Medial orbital cortexipsiMO-0.5
Ventral orbital cortexipsiVO-0.5
Accessory olfactory bulbipsiAOB-0.5
Mitral cell layer of the accessory olfactory bulbipsiAOBml-0.5
Granule cell layer of the accessory olfactory bulbipsiAOBgl-0.5
Accessory olfactory bulb superficial layersipsiAOBsL-0.5
Olfactory bulb A16ipsiMOB-0.5
Anterior olfactory nucleus medial partipsiAONm-0.5
Olfactory tubercleipsiTuO-1
Septal regionipsiSER4
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc1
Lateral septal nucleus dorsal partipsiLSD-0.5
Dorsolateral quadrant of the posterior half of the lateral septal nucleusipsiLSppdL-0.5
Lateral septal nucleus rostral partipsiLSr3
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl3
Lateral septal nucleus rostral part medial zoneipsiLSrm-0.5
Lateral septal nucleus ventral partipsiLSV-1
Posterior septal complexipsiPSC3
Septofimbrial nucleusipsiSFi3
Triangular septal nucleusipsiTS1
Rostrolateral part of the septumipsiSERoL0
Caudoventral septal regionipsiCVSER-0.5
Lateral ventricleipsiLV-0.5
Cervical segment 7ipsiCS7-1
Cerebellar lobule 6contraCERL6-0.5
Dorsomedial hypothalamic nucleus anterior partcontraDMA3
Dorsomedial nucleus posterior partcontraDMHp3
RetinacontraRET2.5
Anterior accumbenscontraAcbA0.5
Dentate gyruscontraDG0
Hilus of the dentate gyruscontraHil-0.5
Field CA1 of hippocampuscontraCA1-0.5
Field CA3 of hippocampuscontraCA3-0.5
SubiculumcontraS-0.5
PostsubiculumcontraPost2
Entorhinal cortexcontraEnt0
Piriform cortexcontraPir2
Anterior cingulate cortexcontraACC1
Prelimbic cortexcontraPrL2
Infralimbic cortexcontraIL2
Perirhinal cortexcontraA35-0.5
Medial agranular prefrontal cortexcontraAGm1
Septal regioncontraSER3
Lateral septal nucleuscontraLS0
Rostrolateral part of the septumcontraSERoL0
Cervical segment 7contraCS7-1

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG-0.5
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC1
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA2
Interfascicular nucleusipsiIF2
Parabrachial pigmented nucleusipsiPBP2
Paranigral nucleusipsiPN2
Laterodorsal tegmental nucleusipsiLDTg0.5
A5 noradrenaline cellsipsiA5-0.5
A7 noradrenaline cellsipsiA7-0.5
Locus coeruleusipsiLC3
Locus coeruleus dorsal partipsiLCD-0.5
Nucleus incertusipsiNI-0.5
Nucleus incertus pars compactaipsiNIc1
Ventrolateral reticular formationipsiVLRF-0.5
Parabrachial nucleusipsiPB-0.5
Gigantocellular reticular nucleusipsiGi1
Subcoeruleus nucleusipsiSubC-0.5
Subcoeruleus nucleus dorsal partipsiSubCD2
Nucleus of the solitary tract medial partipsiSolM-0.5
Dorsal motor nucleus of vagusipsi102
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus caudal partipsiDRC-3
Dorsal raphe nucleus rostral partipsiDRr1
Rostral linear nucleus of the rapheipsiRLi2
Median raphe nucleusipsiMnR3
Pontine raphe nucleusipsiPnR-0.5
Raphe magnus nucleusipsiRMg-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Nucleus of the vertical limb of the diagonal band caudal partipsiVDBc-0.5
Medial septal nucleusipsiMS3
Medial septal nucleus medial partipsiMSm-0.5
Substantia innominataipsiSI3
Intermediate hypothalamic cell groupsipsiIHCG1.5
Medial preoptic nucleusipsiMPO2
Tuberomammillary nucleusipsiTuM-0.5
Tuberomammillary nucleus lateral partipsiTuML-0.5
HypothalamusipsiHYPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral zoneipsiLHA0
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm2
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa1
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area ventrolateral partipsiLHvL1
Central lateral nucleus of the hypothalamusipsiCLLH1
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area central partipsiAHAC1
Anterior hypothalamic nucleus ventromedial partipsiAHAvm-3
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleusipsiPH-0.5
Ventromedial hypothalamic nucleusipsiVMH1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0.5
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleusipsiPa2
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps-3
Suprachiasmatic nucleus dorsomedial partipsiSCnDM-3
Suprachiasmatic nucleus ventrolateral partipsiSCnVL1
Incerto hypothalamic areaipsiicHYPO1
Submammillothalamic nucleusipsiSMT3
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML2
A8 dopamine cells retrorubral groupipsiRRF3
Perifornical nucleusipsiPeF1
Basal retrochiasmatic areaipsiBRCh1
ThalamusipsiT-0.5
Anterodorsal thalamic nucleusipsiAD3
Anteromedial thalamic nucleusipsiAM3
Anteromedial thalamic nucleus lateral partipsiAML-0.5
Anteromedial thalamic nucleus ventral partipsiAMV3
Interanteromedial thalamic nucleusipsiAiM0
Anteroventral thalamic nucleusipsiAV3
Anteroventral thalamic nucleus dorsomedial partipsiAVDM3
Rostroventral part of the dorsomedial anteroventral thalamic nucleusipsiAVDMrv-0.5
Anteroventral thalamic nucleus ventrolateral partipsiAVVL3
Anterior part of the ventrolateral anteroventral thalamic nucleusipsiAVvLa-0.5
Dorsal part of the anterior part of the ventrolateral anteroventral thalamic nucleusipsiAVvLad-0.5
Ventral part of the posterior part of the ventrolateral anteroventral thalamic nucleusipsiAVvLpv-0.5
Lateral anterior nucleus of the thalamusipsiLATN-0.5
Central medial thalamic nucleusipsiCM-0.5
Rhomboid thalamic nucleusipsiRh3
Lateral group of the dorsal thalamusipsiLAT-0.5
Posterior thalamic nuclear groupipsiPo1
Paratenial thalamic nucleusipsiPT1
Paratenial thalamic nucleus dorsal partipsiPTD-0.5
Paraventricular thalamic nucleusipsiPV-0.5
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus rostral partipsiReRo-0.5
Ventrolateral thalamic nucleusipsiVL3
Anterodorsal part of the ventrolateral thalamic nucleusipsiVLad-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Lateral part of ventral posterolateral thalamic nucleusipsiVPLL-0.5
Ventromedial thalamic nucleusipsiVM1
Ventromedial thalamic nucleus rostral partipsiVMR1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD3
Laterodorsal thalamic nucleus dorsomedial partipsiLDDM3
Medial part of the dorsomedial laterodorsal thalamic nucleusipsiLDDMm-0.5
Laterodorsal thalamic nucleus ventrolateral partipsiLDVL3
Ventrolateral part of the posterior laterodorsal thalamic nucleusipsiLDpvL-0.5
Posterior groupipsiPTG1
Reticular thalamic nucleusipsiRt2
Subparafascicular thalamic nucleusipsiSPF0
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Ventral medial nucleus of the thalamusipsiVMT1
Zona incertaipsiZI-0.5
Ventral bank of the rhinal fissureipsiVBrf-1
Amygdaloid complexipsiAC-0.5
Basal nucleusipsiBnc3
Accessory basal nucleusipsiAB3
Accessory basal nucleus magnocellular divisionipsiABm2
Accessory basal nucleus parvicellular divisionipsiABp2
Basal nucleus parvicellular part caudomedial regionipsiBpccm2
Basal nucleus parvicellular part lateral portionipsiBpcL0.5
Basolateral amygdaloid nucleusipsiBL-0.5
Anterior basolateral nucleusipsiBLA0.5
Posterior basolateral nucleusipsiBLP2
Ventral basolateral nucleusipsiBLV-0.5
Parvicellular basolateral nuclear complex of the amygdala caudal portionipsiBLpcc0
Basomedial amygdaloid nucleusipsiBM1
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP1
Lateral amygdaloid nucleusipsiLA2
Lateral nucleus medial partipsiLAM1
Ventrolateral part of the lateral nucleusipsiLaVL1
Ventromedial part of the lateral nucleusipsiLaVM3
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd1
Central amygdaloid nucleusipsiCe3
Amygdalopiriform transition areaipsiAPir-0.5
Amygdalopiriform transition area lateral partipsiAPirLP2.5
Amygdalopiriform transition area medial partipsiAPirM1
Amygdalopiriform transition area posteromedial partipsiAPir_PM-0.5
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp3
Posterior amygdaloid nucleus medial partipsiCOApm3
Posterolateral cortical nucleusipsiPLCo1
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm2
Periamygdaloid complex sulcal divisionipsiPACs2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus caudal partipsiMeC1
Medial amygdaloid nucleus central divisionipsiMeCd1
Amygdalohippocampal areaipsiAHi2
Amygdalohippocampal area anterolateral partipsiAHiAL-1
Amygdalohippocampal area lateral partipsiAHilp3
Amygdalohippocampal area medial partipsiAHimp1
Posteromedial cortical nucleusipsiPMCo1
ClaustrumipsiCl3
Caudate putamenipsiCPu2
Dentate gyrusipsiDG2
Polymorph layer of the dentate gyrusipsiDGpo-1
Hilus of the dentate gyrusipsiHil-2
Hilar mossy cellsipsiHilmc0
Hilus of the dentate gyrus non-pyramidal cellsipsiHilnopy-0.5
Hilus of the dentate gyrus multipolar cellsipsiHilmuc-0.5
Field CA1 of hippocampusipsiCA12
Field CA1 of hippocampus layer stratum pyramidal cellsipsiCA1L3spc-0.5
Field CA1 of hippocampus layer stratum oriens non-pyramidal cellsipsiCA1L2sonpy-0.5
Field CA2 of hippocampusipsiCA23
Field CA3 of hippocampusipsiCA33
Distal one-third field CA3 of hippocampusipsiDCA3ot-0.5
Field CA3 of hippocampus layer stratum lucidum spiny neuronsipsiCA3L4slsp0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy-0.5
Field CA3 of hippocampus mid portionipsiCA3mi-0.5
Field CA3a of hippocampusipsiCA3a3
Field CA3b of hippocampus stratum pyramidale pyramidal cellsipsiCA3bpyc3
Distal CA3b of hippocampusipsiCA3bd-0.5
Field CA3c of hippocampus pyramidal cellsipsiCA3cPC3
Proximal field CA3 of hippocampusipsiPCA3-2
SubiculumipsiS2
Subiculum layer 4 pyramidal cellsipsiSuL4pc-0.5
Subiculum ventral partipsiSv-0.5
Fimbriaipsifimb0
PresubiculumipsiPrS-0.5
ParasubiculumipsiPaS1
Entorhinal cortexipsiEnt3
Entorhinal cortex layer 3ipsiEntL33
Entorhinal cortex layer 2ipsiEntL23
Dorsolateral entorhinal cortexipsiDLEnt-1
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex layer 1bipsiLEntL1b-0.5
Lateral entorhinal cortex layer 2ipsiLEntL23
Lateral entorhinal cortex layer 3ipsiLEntL33
Lateral entorhinal cortex layer 5ipsiLEntL51
Lateral entorhinal cortex layer 6ipsiLEntL60.5
Area 28L'ipsiLEntL'-0.5
Medial entorhinal cortexipsiMEnt-0.5
Medial entorhinal cortex dorsal partipsiMEntD-1
Medial entorhinal cortex layer 2ipsiMEntLyL23
Medial entorhinal cortex layer 3ipsiMEntLyL33
Medial entorhinal cortex ventral part layer 3ipsiMEntVL3-0.5
Medial entorhinal cortex ventral part deep part of molecular layeripsiMEntVdL1-0.5
Medial entorhinal cortex ventral part layer 2ipsiMEntVL2-0.5
Area 28M'ipsiMEnt28M'-0.5
Medial entorhinal fieldipsiMEntF1
Medial entorhinal field layer 5ipsiMEntFL51
Medial entorhinal field layer 6ipsiMEntFL60.5
Medial entorhinal field layer 2ipsiMEntFL21
Area TRipsiEntTR-0.5
Piriform cortex layer 2ipsiPirL21
Piriform cortex layer 3ipsiPirL31
Postpiriform transition areaipsiTR-0.5
Infralimbic cortexipsiIL1
Insular cortexipsiICX2
Agranular insular cortexipsiAI1
Anterior insular cortexipsiICXa3
Perirhinal cortexipsiA351
Perirhinal cortex anterior portion layer 3 to layer 5ipsiPRhaL3L51
Perirhinal cortex anterior portion layer 5ipsiPRhaL5-0.5
Perirhinal cortex anterior portion layer 5 to layer 6ipsiPRhaL5L62
Perirhinal cortex anterior portion layer 6ipsiPRhaL60
Perirhinal cortex deep part of the superficial layer 2ipsiPRhdsL2-0.5
Deep part of the superficial portion pf perirhinal cortex layer 3ipsiPRhL3ds-0.5
Perirhinal cortex layer 5ipsiA35L50
Perirhinal cortex layer 6ipsiA35L60
Lateral agranular prefrontal cortexipsiAGl2
Medial prefrontal cortexipsimPFC-0.5
Interpeduncular nucleus caudal subnucleusipsiIPC-0.5
Interpeduncular nucleus caudal subnucleus apical subdivisionipsiIPCa-0.5
Interpeduncular nucleus caudal subnucleus lateral partipsiIPCL-0.5
Interpeduncular nucleus caudal portion dorsal aspectipsiIPCD-0.5
Septal regionipsiSER-0.5
Substantia nigra compact partcontraSNC0
Substantia nigra reticular partcontraSNR0
Ventral tegmental area A10contraVTA-0.5
Interfascicular nucleuscontraIF1
Parabrachial pigmented nucleuscontraPBP1
Paranigral nucleuscontraPN1
Subcoeruleus nucleus dorsal partcontraSubCD1.5
Rostral linear nucleus of the raphecontraRLi1
Medial septal nucleuscontraMS0.5
Intermediate hypothalamic cell groupscontraIHCG-0.5
Tuberomammillary nucleuscontraTuM-0.5
Lateral hypothalamic areacontraLH-0.5
Anterior hypothalamic areacontraAHA-0.5
Dorsal hypothalamic areacontraDA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Supramammillar nucleuscontraSuM-0.5
Anterodorsal thalamic nucleuscontraAD1
Anteromedial thalamic nucleuscontraAM1
Anteromedial thalamic nucleus lateral partcontraAML-0.5
Anteromedial thalamic nucleus ventral partcontraAMV1
Interanteromedial thalamic nucleuscontraAiM0
Anteroventral thalamic nucleuscontraAV1
Anteroventral thalamic nucleus dorsomedial partcontraAVDM1
Rostroventral part of the dorsomedial anteroventral thalamic nucleuscontraAVDMrv-0.5
Anteroventral thalamic nucleus ventrolateral partcontraAVVL1
Anterior part of the ventrolateral anteroventral thalamic nucleuscontraAVvLa-0.5
Dorsal part of the anterior part of the ventrolateral anteroventral thalamic nucleuscontraAVvLad-0.5
Ventral part of the posterior part of the ventrolateral anteroventral thalamic nucleuscontraAVvLpv-0.5
Paratenial thalamic nucleuscontraPT0.5
Paratenial thalamic nucleus dorsal partcontraPTD-0.5
Reuniens thalamic nucleuscontraRe1
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Lateral part of ventral posterolateral thalamic nucleuscontraVPLL-0.5
Laterodorsal thalamic nucleuscontraLD0
Laterodorsal thalamic nucleus dorsomedial partcontraLDDM0
Medial part of the dorsomedial laterodorsal thalamic nucleuscontraLDDMm-0.5
Laterodorsal thalamic nucleus ventrolateral partcontraLDVL0
Ventrolateral part of the posterior laterodorsal thalamic nucleuscontraLDpvL0
Reticular thalamic nucleuscontraRt-0.5
Zona incertacontraZI-0.5
HippocampuscontraHIPP-0.5
Dentate gyruscontraDG1
Hilus of the dentate gyruscontraHil3
Field CA1 of hippocampuscontraCA1-0.5
Field CA1 of hippocampus anterior partcontraCA1A3
Field CA1 of hippocampus layer stratum pyramidalecontraCA1pyr3
Field CA1 of hippocampus layer stratum orienscontraCA1or3
Field CA1 of hippocampus septal partcontraCA1sep1
Field CA2 of hippocampus layer stratum pyramidalecontraCA2pyr3
Field CA2 of hippocampus layer stratum orienscontraCA2or3
Field CA3 of hippocampuscontraCA3-0.5
Field CA3 of hippocampus layer stratum pyramidalecontraCA3pyr3
Field CA3 of hippocampus granule cellscontraCA3Lgc-0.5
Lateral part of hippocampuscontraHIPPRL-0.5
Entorhinal cortexcontraEnt-0.5
Lateral entorhinal cortexcontraLEnt-0.5
Medial entorhinal cortexcontraMEnt-0.5
Interpeduncular nucleus caudal subnucleus apical subdivisioncontraIPCa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications