University of Rostock

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Rat connectome



Whisker motor cortex A1 left


Abbreviation
WMCxA1
Color       
Superior regionsWhisker motor cortex row A

SynonymsAbbr.Language
Whisker motor cortex A1WMCxA1 

SubregionsSide
Whisker motor cortex A1 layer 1left
Whisker motor cortex A1 layer 2left
Whisker motor cortex A1 layer 3left
Whisker motor cortex A1 layer 4left
Whisker motor cortex A1 layer 5left
Whisker motor cortex A1 layer 6left

Output to

NameSideAbbr.WeightDetails
Superior colliculus intermediate white layeripsiSAI0.5
Deep gray layer of the superior colliculusipsiDpG0.5
Deep white layer of the superior colliculusipsiDpWh0.5
Subpeduncular tegmental nucleusipsiSPTg1.5
Prepositus nucleusipsiPr2
Reticular systemipsiRF3
Intermediate reticular nucleusipsiIRt3
Pontine reticular nucleusipsiPRN1.5
Pontine reticular nucleus rostrocaudal partipsiPRNrc-0.5
Medullary reticular nucleusipsiMdD3
Medial medullary reticular nucleusipsiMMdD3
Parvicellular reticular nucleusipsiPCRt3
Subcoeruleus nucleusipsiSubC1.5
Ambiguus nucleusipsiAmb2
Supratrigeminal nucleusipsiSu52
Motor trigeminal nucleusipsiMo50.5
Superior colliculus intermediate white layercontraSAI1
Deep gray layer of the superior colliculuscontraDpG1
Deep white layer of the superior colliculuscontraDpWh1
Subpeduncular tegmental nucleuscontraSPTg1.5
Prepositus nucleuscontraPr1
Reticular systemcontraRF3
Intermediate reticular nucleuscontraIRt3
Pontine reticular nucleuscontraPRN1.5
Pontine reticular nucleus rostral partcontraPRNR2
Gigantocellular reticular nucleuscontraGi2
Medullary reticular nucleuscontraMdD3
Medial medullary reticular nucleuscontraMMdD3
Medullary reticular nucleus ventral partcontraMdV1
Parvicellular reticular nucleuscontraPCRt3
Subcoeruleus nucleuscontraSubC1.5
Ambiguus nucleuscontraAmb1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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