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Rat connectome



Supratrigeminal nucleus left


Abbreviation
Su5
Color       
Superior regionsNuclei of the trigeminal complex

SynonymsAbbr.Language
Supratrigeminal nucleusSu5Eng
Supratrigeminal region  
Supratrigeminal nucleusVsupEng
Supratrigeminal area Eng
Supratrigeminal nucleusSUTEng
Supratrigeminal nucleus of Lorento De No Eng

SubregionsSide
Rostral part of the supratregeminal nucleusleft
Supratrigeminal nucleus caudal partleft
Supratrigeminal nucleus caudolateral partleft
Supratrigeminal nucleus lateral partleft
Supratrigeminal nucleus medial partleft
Ventromedial supratrigeminal nucleusleft
Supratrigeminal nucleus surrounding arealeft
Supratrigeminal nucleus interneuronleft
Supratrigeminal nucleus rostrocaudal partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG0
Superior colliculus deep layersipsiSCd0
Nucleus of Probsts bundleipsiNPB3
Dorsolateral reticular formationipsiDLRF-0.5
Medial reticular formationipsiRFm-0.5
Median reticular nucleusipsiRFMED1
Paramedian reticular nucleusipsiPMn1
Ventromedial reticular formationipsiVMRF-0.5
Pontine reticular nucleusipsiPRN-0.5
Gigantocellular reticular nucleusipsiGi1
Medullary reticular nucleusipsiMdD3
Parvicellular reticular nucleusipsiPCRt3
Parvicellular reticular nucleus alpha partipsiPCRtA-0.5
Parvicellular reticular nucleus caudal portionipsipRNc-0.5
Facial nucleusipsi73
Facial nucleus intermediate partipsi7i2
Facial nucleus lateral subnucleusipsi7L1
Facial nucleus medial partipsi7M0
Dorsal portion of the facial motor nucleusipsi7D2
Facial nucleus dorsal intermediate subnucleusipsi7DI-0.5
Hypoglossal nucleusipsi12S3
Hypoglossal motor nucleusipsi12M-0.5
Ventrolateral hypoglossal nucleusipsi12SVL3
Midline part of the hypoglossal nucleusipsi12SMM1
Medial subcompartment of the ventral compartment of the hypoglossal nucleusipsi12SVm3
Hypoglossal nucleus rostral partipsi12Sr1
Dorsal part of the hypoglossal nucleusipsi12SD3
Caudal part of the hypoglossal nucleusipsi12SC1
Intertrigeminal nucleusipsiI5-0.5
Juxtatrigeminal areaipsiJx5-0.5
Supratrigeminal nucleusipsiSu5-0.5
Trigeminal nucleusipsi5-0.5
Mesencephalic trigeminal nucleusipsiMe5-0.5
Motor trigeminal nucleusipsiMo53
Motor trigeminal nucleus dorsolateral partipsiMo5DL-0.5
Motor trigeminal nucleus ventromedial partipsiMo5VM1
Motor trigeminal nucleus jaw closing componentipsiMo5jcc3
Motor trigeminal nucleus jaw opening componentipsiMo5joc3
Principal sensory trigeminal nucleusipsiPr53
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Principal sensory trigeminal nucleus medial partipsiPr5me-0.5
Spinal trigeminal nucleusipsiSp5nc3
Spinal trigeminal nucleus dorsolateral partipsiSp5ncDL-0.5
Spinal trigeminal nucleus medial partipsiSp5ncM-0.5
Raphe nucleiipsiRAN-0.5
Superior salivatory nucleusipsiSuS2
Paracentral thalamic nucleusipsiPC-0.5
Posterior thalamic nuclear groupipsiPo0
Submedius thalamic nucleusipsiSub0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC1
Ventral posterolateral thalamic nucleusipsiVPL0
Ventral posteromedial thalamic nucleus caudo-ventromedial partipsiVPMcVM0
Ventral posteromedial thalamic nucleus coreipsiVPMc0
Ventral posteromedial thalamic nucleus caudo-ventromedial edgeipsiVPMcvm2
Parafascicular nucleusipsiPFa-0.5
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL3
Lateral capsular subdivision of the central nucleus of the amygdalaipsiCeLac3
Central amygdaloid nucleus lateral divisionipsiCeL3
Intercalated cell chain between Ce BL LAipsiIMcc3
Intercalated masses between intermediate and external fiber capsulesipsiIMie-0.5
Intercalated masses dorsal to the rostral pole of CeipsiIMdr-0.5
Intercalated masses ventral and dorsal to posterior limb of the anterior commissureipsiIMvd-0.5
Central graycontraCG0
Central gray mesencephalic part intercollicular levelcontraCGMint1
Superior colliculus deep layerscontraSCd0
Nucleus of Probsts bundlecontraNPB2
Dorsolateral reticular formationcontraDLRF-0.5
Medial reticular formationcontraRFm-0.5
Ventromedial reticular formationcontraVMRF-0.5
Medullary reticular nucleuscontraMdD2
Parvicellular reticular nucleuscontraPCRt2
Parvicellular reticular nucleus alpha partcontraPCRtA-0.5
Parvicellular reticular nucleus caudal portioncontrapRNc-0.5
Facial nucleuscontra72
Hypoglossal nucleuscontra12S1
Ventrolateral hypoglossal nucleuscontra12SVL1
Midline part of the hypoglossal nucleuscontra12SMM-0.5
Medial subcompartment of the ventral compartment of the hypoglossal nucleuscontra12SVm1
Hypoglossal nucleus rostral partcontra12Sr-0.5
Dorsal part of the hypoglossal nucleuscontra12SD1
Caudal part of the hypoglossal nucleuscontra12SC-0.5
Intertrigeminal nucleuscontraI5-0.5
Juxtatrigeminal areacontraJx5-0.5
Supratrigeminal nucleuscontraSu53
Area around the motor nucleus of the trigeminal nervecontra5aa3
Motor trigeminal nucleuscontraMo53
Motor trigeminal nucleus dorsolateral partcontraMo5DL-0.5
Motor trigeminal nucleus ventral partcontraMo5V3
Motor trigeminal nucleus ventromedial partcontraMo5VM-0.5
Motor trigeminal nucleus jaw closing componentcontraMo5jcc3
Motor trigeminal nucleus jaw opening componentcontraMo5joc2
Principal sensory trigeminal nucleuscontraPr52
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Principal sensory trigeminal nucleus medial partcontraPr5me-0.5
Spinal trigeminal nucleuscontraSp5nc2
Spinal trigeminal nucleus dorsolateral partcontraSp5ncDL-0.5
Spinal trigeminal nucleus medial partcontraSp5ncM-0.5
Raphe nucleicontraRAN-0.5
Posterior thalamic nuclear groupcontraPo0
Submedius thalamic nucleuscontraSub0
Ventral posterior thalamic nucleus parvicellular partcontraVPPC2
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL0
Ventral posteromedial thalamic nucleuscontraVPM1
Ventral posteromedial thalamic nucleus caudo-ventromedial partcontraVPMcVM0
Ventral posteromedial thalamic nucleus corecontraVPMc1
Ventral posteromedial thalamic nucleus core lingualcontraVPMcL0
Ventral posteromedial thalamic nucleus core infraorbitalcontraVPMci0
Ventral posteromedial thalamic nucleus caudo-ventromedial edgecontraVPMcvm3
Zona incertacontraZI3
Submandibular ganglionipsiAutoGsm1
Sympathetic nervous systemipsiSNS1
Parasympathetic nervous systemipsiPaNS1
Hypoglossal nerveipsi12P2
Inferior alveolar nerveipsiialv-2
Infraorbital nerveipsiiobn-2
Mandibulary nerve plexusipsi5V3px0
Mylohyoid nerveipsimyhy0
Intrinsic lingual musculatureipsiOrgOCTmusci-10
Musculus masseteripsiMuscMass1
Temporal muscleipsiMuscT-0.5
Styloglossus muscle systemipsiMuscStyG-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Central gray lateral ventral partipsiCGVD3
Surrounding central tegmental fieldipsiTGACsur3
Peduncularpontine nucleusipsiPPN1
Substantia nigra compact part dorsal surfaceipsiSNCDs-0.5
Substantia nigra compact part lateral part of the dorsal surfaceipsiSNCDLs3
Substantia nigra reticular partipsiSNR1
Edinger Westphal nucleusipsiEW1
Interstitial nucleus of CajalipsiInC1
Nucleus of Probsts bundleipsiNPB3
Dorsolateral reticular formationipsiDLRF-0.5
Intermediate reticular nucleusipsiIRt-0.5
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Medullary reticular nucleusipsiMdD3
Parvicellular reticular nucleusipsiPCRt3
Parvicellular reticular nucleus alpha partipsiPCRtA-0.5
Parvicellular reticular nucleus rostral portionipsipRNr3
Intertrigeminal nucleusipsiI5-0.5
Juxtatrigeminal areaipsiJx5-0.5
Supratrigeminal nucleusipsiSu5-0.5
Mesencephalic trigeminal nucleusipsiMe53
Mesencephalic trigeminal nucleus rostral partipsiMe5R3
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp3
Motor trigeminal nucleusipsiMo53
Principal sensory trigeminal nucleusipsiPr53
Principal sensory trigeminal nucleus dorsal partipsiPr5D3
Principal sensory trigeminal nucleus dorsomedial partipsiPr5DM-0.5
Spinal trigeminal nucleusipsiSp5nc3
Spinal trigeminal nucleus caudal partipsiSp5C3
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Dorsal part of spinal trigeminal nucleus oral partipsiSp5OD3
Trigeminal subnucleus caudalisipsi5SSC-0.5
Peritrigeminal zoneipsiP5-0.5
Trigeminal ganglionipsi5Gn-0.5
Mandibular region of the trigeminal ganglionipsi5GnMa2
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nerveipsi5GnMaEm3
Maxillary region of the trigeminal ganglionipsi5GnV2-0.5
Caudal area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnROM3
Superficial part of the trigeminal ganglionipsi5GnS3
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca3
Rostral central part of the nucleus of the solitary tractipsiSolRCe3
Nucleus of the solitary tract intermediate partipsiSolIM3
Nucleus of the solitary tract interstitial partipsiSoli2
Nucleus of the solitary tract lateral partipsiSolL2
Medial part of the lateral subnucleus of the solitary tractipsiSolLMe1
Nucleus of the solitary tract medial partipsiSolM2
Nucleus of the solitary tract rostral partipsiSolro3
Medial part of rostral portion of the nucleus of the solitary tractipsiSolroM0.5
Ventral part of the rostral nucleus of the solitary tractipsiSolroV2
Nucleus of the solitary tract rostrolateral partipsiSolRL1
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus lateral partipsiDRLa0.5
Superior central raphe nucleusipsiCS1
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Substantia innominataipsiSI3
Substantia innominata lateral partipsiSIl3
Lateral preoptic areaipsiLPO3
Magnocellular preoptic nucleusipsiMCPO3
Median preoptic nucleusipsiMnPO3
Dorsomedial hypothalamic nucleusipsiDMHy0
Dorsomedial hypothalamic nucleus large-celled loosely packed portionipsiDMHyLC-0.5
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area dorsal partipsiLHd0.5
Lateral hypothalamic area ventral partipsiLHAvp1
Tuberal region of lateral hypothalamusipsiTuLH3
Anteroventral periventricular nucleus lateral borderipsiAVPeL1
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Parastriatal nucleusipsiPS1
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Periventricular zoneipsiPVZ0
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular nucleus lateral parvocellular partipsiPaLp3
A8 dopamine cells retrorubral groupipsiRRF3
Medial part of the caudal perifornical areaipsiPeFCM1
Lateral part of the caudal perifornical areaipsiPeFCL1
Retrochiasmatic areaipsiRCh1
Ventrobasal complexipsiVB0
Zona incertaipsiZI3
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL0
Basomedial amygdaloid nucleusipsiBM0
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL3
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL3
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV3
Bed nucleus of the stria terminalis posterolateral partipsiBSTPL3
Bed nucleus of the stria terminalis preoptic partipsiBSTPO3
Central amygdaloid nucleusipsiCe-3
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM1
Anterior amygdaloid areaipsiAA3
Medial amygdaloid nucleusipsiMe0
Intercalated cell chain between Ce BL LAipsiIMcc3
Intercalated masses between intermediate and external fiber capsulesipsiIMie-0.5
Intercalated masses dorsal to the rostral pole of CeipsiIMdr-0.5
Intercalated masses ventral and dorsal to posterior limb of the anterior commissureipsiIMvd-0.5
Caudal part of claustrumipsiCCl3
Parasubthalamic nucleusipsiPSTh-0.5
Infralimbic cortex layer 5 caudal halfipsiILL5ch3
Insular cortexipsiICX3
Agranular insular cortexipsiAI2
Agranular insular cortex caudal part layer 5ipsiAICL53
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Dysgranular insular cortex layer 5ipsiDIL53
Middle part of the caudal one-third of the dysgranular insular cortexipsiDIvCotMi1
Caudal part of the caudal one-third of the dysgranular insular cortexipsiDIvCotC1
Rostral two-thirds of the dysgranular insular cortexipsiRDIrtt1
Caudal part of the caudal one-third of the granular insular cortexipsiGICotC1
Middle part of the caudal one-third of the granular insular cortexipsiGICotM1
Rostral two-thirds of the granular insular cortexipsiRttGI1
Dorsal granular insular cortexipsiDGI-0.5
Perirhinal cortexipsiA351
Mid-dorsal peduncular cortexipsiMiDP1
Lateral agranular prefrontal cortexipsiAGl0.5
Jaw movement motor cortexipsiJMCx1
Whisker motor cortex A1ipsiWMCxA12
Primary somatosensory cortexipsiS11
Primary somatosensory cortex rostral most partipsiS1rm1
Dorsal root ganglion C2ipsiDRGC2-0.5
Spinal cord layer 5 C2ipsiSCL5C2-2
Spinal cord layer 6 C2ipsiSCL6C2-2
Spinal cord layer 7 C2ipsiSCL7C2-2
Dorsal root ganglion C3ipsiDRGC3-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C5ipsiDRGC5-0.5
Surrounding central tegmental fieldcontraTGACsur3
Nucleus of Probsts bundlecontraNPB2
Intermediate reticular nucleuscontraIRt-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Koelliker Fuse nucleuscontraKF3
Lateral parabrachial nucleus central lateral partcontraLPBCL3
Parabrachial nucleus ventral part lateral portioncontraPBVL3
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Medullary reticular nucleuscontraMdD2
Parvicellular reticular nucleus alpha partcontraPCRtA-0.5
Intertrigeminal nucleuscontraI5-0.5
Juxtatrigeminal areacontraJx5-0.5
Supratrigeminal nucleuscontraSu53
Mesencephalic trigeminal nucleuscontraMe5-0.5
Motor trigeminal nucleuscontraMo52
Principal sensory trigeminal nucleuscontraPr52
Principal sensory trigeminal nucleus dorsal partcontraPr5D1
Spinal trigeminal nucleuscontraSp5nc2
Spinal trigeminal nucleus interpolar partcontraSp5I-0.5
Spinal trigeminal nucleus oral partcontraSp5O-0.5
Peritrigeminal zonecontraP5-0.5
Mandibular region of the trigeminal ganglioncontra5GnMa2
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract intermediate partcontraSolIM2
Nucleus of the solitary tract interstitial partcontraSoli1
Nucleus of the solitary tract lateral partcontraSolL1
Medial part of the lateral subnucleus of the solitary tractcontraSolLMe2
Nucleus of the solitary tract medial partcontraSolM1
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic areacontraLH-0.5
Lateral hypothalamic area dorsal partcontraLHd-0.5
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0
Periventricular zonecontraPVZ0
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Central amygdaloid nucleuscontraCe-0.5
Parasubthalamic nucleuscontraPSTh-0.5
Agranular insular cortexcontraAI3
Middle part of the caudal one-third of the dysgranular insular cortexcontraDIvCotMi1
Caudal part of the caudal one-third of the dysgranular insular cortexcontraDIvCotC1
Rostral two-thirds of the dysgranular insular cortexcontraRDIrtt1
Caudal part of the caudal one-third of the granular insular cortexcontraGICotC1
Middle part of the caudal one-third of the granular insular cortexcontraGICotM1
Rostral two-thirds of the granular insular cortexcontraRttGI1
Dorsal granular insular cortexcontraDGI2.5
Lateral agranular prefrontal cortexcontraAGl1
Jaw movement motor cortexcontraJMCx1
Primary somatosensory cortexcontraS10.5
Primary somatosensory cortex rostral most partcontraS1rm1.5
Dorsal root ganglion C2contraDRGC2-0.5
Dorsal root ganglion C3contraDRGC3-0.5
Dorsal root ganglion C4contraDRGC4-0.5
Dorsal root ganglion C5contraDRGC5-0.5
Inferior alveolar nerveipsiialv2
Infraorbital nerveipsiiobn1
Jaw muscle afferent neuronsipsiMuscJawMneuro-0.5
Lingual nerveipsi5V3Li1
Masseteric nerveipsimass2
Mylohyoid nerveipsimyhy0
Palatine nerveipsipala0.5
Medial pterygoid nerveipsipterygoM2
Deep temporal nerveipsitempD2
Auricolotemporal nerveipsiautemp1
Jaw muscle afferent neuronscontraMuscJawMneuro-0.5
Lingual nervecontra5V3Li1
Auriculotemporal nervecontra5V3Aute1
Mylohyoid nervecontramyhy0
Inferior alveolar nervecontraialv2
Periodontal membraneipsiOrgTeethPm-0.5
TongueipsiOrgOCT-10
Intervibrissal furipsiiVFu0
Mandibular incisor pulpipsiOrgBSmip0.5
Anterior digastricus muscleipsiMuscADig-10
Posterior digastricus muscleipsiMuscPDig-10
Genioglossus muscleipsiMuscGenioG-10
Geniohyoid muscleipsiMuscGenio-10
Jaw muscle spindlesipsiMuscJawS-0.5
Jaw elevator muscle spindlesipsiMuscJawSe-0.5
Musculus masseteripsiMuscMass-0.5
Muscle spindles of the masseter muscleipsiMuscMassSpi-0.5
Temporal muscleipsiMuscT-10
Pterygoid muscleipsiMuscPterygo-10
Mylohyoid muscleipsiMuscMyhy-10
Styloglossus muscle systemipsiMuscStyG-10
Buccinator muscleipsiMuscBucc-10
PlatysmaipsiMuscPla-10
Zygomatic muscleipsiMuscZygo-10
Hyoglossus muscleipsiMuscHyo-10
Jaw muscle spindlescontraMuscJawS-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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