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Rat connectome



Primary visual cortex layer 1 left


Abbreviation
V1L1
Color       
Superior regionsPrimary visual cortex superficial layers

SynonymsAbbr.Language
Primary visual cortex layer 1V1L1 
Layer I of occipital cortex area 1 Eng

SubregionsSide
Primary visual cortex layer 1 cell populationsleft
Primary visual cortex layer 1bleft

Output to

NameSideAbbr.WeightDetails
Optic nerve layer of the superior colliculusipsiOp-2
Pons ventral partipsiPve-2
Primary visual cortexipsiV1-0.5
Anterior part of the primary visual cortexipsiV1a3
Mediolateral part of the primary visual cortexipsiV1mL3
Primary visual cortex layer 1ipsiV1L13
Primary visual cortex deeper half of layers 2 3ipsiV1L23d3
Primary visual cortex layer 4ipsiV1L41
Middle layer of primary visual cortex layer 6ipsiV1L6m1
Primary visual cortex layer 6 lower partipsiV1L6L3
Primary visual cortex layer 6 upper partipsiV1L6u3
Primary visual cortex superficial layer 2 3ipsiV1L23s2
Secondary visual cortexipsiV2-0.5
Secondary visual cortex medial areaipsiV2M0.5
Secondary visual cortex lateral areaipsiV2L0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 1ipsiLMV2LL11
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 2ipsiLMV2LL23
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 3ipsiLMV2LL33
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 4ipsiLMV2LL43
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 5ipsiLMV2LL51
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 6ipsiLMV2LL61
Secondary visual cortex lateral area layer 4ipsiV2LL41.5
Secondary visual cortex lateral area superficial layer 1ipsiV2LsL11.5
Secondary visual cortex lateral area layer 5ipsiV2LL51.5
Secondary visual cortex lateral area layer 6ipsiV2LL61.5
Anterolateral extrastriate cortexipsiALExCx3
Posterior lateral extrastriate cortexipsiVISPX3
Lateromedial part of the lateral extrastriate cortex layer 5ipsiVISLLML51
Lateromedial part of the lateral extrastriate cortex layer 6ipsiVISLLML61
Lateromedial part of the lateral extrastriate cortex layer 3ipsiVISLLML33
Lateromedial part of the lateral extrastriate cortex layer 4ipsiVISLLML43
Lateromedial part of the lateral extrastriate cortex layer 1ipsiVISLLML11
Lateromedial part of the lateral extrastriate cortex layer 2ipsiVISLLML23
Lateromedial extrastriate cortexipsiLMExCx3
Posterior extrastriate cortexipsiPExCx3
Lateral geniculate complexipsiLG-2
Visual regionscontraVR1
Area 17 area 18a border regioncontraVR1B2a0
Primary visual cortexcontraV11
Secondary visual cortexcontraV21
Secondary visual cortex lateral areacontraV2L0

Input from

NameSideAbbr.WeightDetails
Basal forebrainipsiBAF0.5
Dorsal part of the lateral geniculate complexipsiLGd1.5
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Centrolateral thalamic nucleus dorsal partipsiCLD1.5
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group medial partipsiPoMe2
Reuniens thalamic nucleusipsiRe3
Dorsomedial part of ventral anterior-lateral complex of the thalamusipsiVALdm3
Ventromedial thalamic nucleusipsiVM3
Lateral posterior thalamic nucleusipsiLP3
Posterior groupipsiPTG1
Rostral thalamusipsiRoT3
RetinaipsiRET1.5
Retrosplenial agranular cortexipsiRSA3
Retrosplenial agranular cortex layer 2ipsiRSAL21
Retrosplenial agranular cortex layer 3ipsiRSAL31
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc0.5
Frontal cortex area 1 layer 5bipsiFr1L5b0.5
Frontal cortex area 1 layer 6ipsiFr1L60.5
Frontal cortex area 1 layer 2ipsiFr1L20.5
Frontal cortex area 1 layer 3ipsiFr1L30.5
Frontal cortex area 2ipsiFr22
Frontal cortex area 2 layer 3ipsiFr2L31
Frontal cortex area 2 layer 2ipsiFr2L21
Frontal cortex area 2 layer 5cipsiFr2L5c1
Frontal cortex area 2 layer 6ipsiFr2L61
Parietal cortex posterior area dorsal partipsiParPD-2
Temporal association area 2 dorsal partipsiTe2D1
Temporal association cortex 1 layer 3ipsiTeAL31
Temporal association cortex 1 layer 2ipsiTeAL21
Perirhinal cortexipsiA35-0.5
Area 17 area 18b border region layer 6ipsiVR1B2RL63
Area 17 area 18b border region middle layersipsiVR1B2RmiL3
Primary visual cortexipsiV1-1
Primary visual cortex layer 1ipsiV1L13
Primary visual cortex layer 2ipsiV1L23
Primary visual cortex deeper half of layers 2 3ipsiV1L23d-0.5
Primary visual cortex layer 3 4 borderipsiV1L342
Primary visual cortex layer 3ipsiV1L33
Primary visual cortex layer 4ipsiV1L41
Primary visual cortex layer 5ipsiV1L52
Primary visual cortex layer 5 aipsiV1L5a2
Primary visual cortex layer 5 bipsiV1L5b3
Primary visual cortex layer 6ipsiV1L63
Primary visual cortex layer 6 lower partipsiV1L6L1
Primary visual cortex gray white border of layer 6ipsiV1L6Lgw-0.5
Primary visual cortex layer 6 upper partipsiV1L6u1.5
Secondary visual cortex medial areaipsiV2M1
Secondary visual cortex medial area layer 4ipsiV2ML40
Secondary visual cortex medial area layer 3ipsiV2ML33
Secondary visual cortex medial area layer 2ipsiV2ML23
Secondary visual cortex medial area layer 5ipsiV2ML53
Secondary visual cortex medial area layer 6ipsiV2ML63
Secondary visual cortex medial area medial partipsiV2MMe-0.5
Secondary visual cortex anterior part of the medial area medial partipsiV2MMea3
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Secondary visual cortex lateral area layer 4ipsiV2LL43
Secondary visual cortex lateral area layer 2ipsiV2LL23
Secondary visual cortex lateral area layer 3ipsiV2LL33
Secondary visual cortex lateral area layer 5ipsiV2LL52
Secondary visual cortex lateral area layer 6ipsiV2LL61.5
Far lateral extrastriate cortexipsiVISFL3
Lateromedial part of the lateral extrastriate cortexipsiVISLLM3
Lateromedial extrastriate cortexipsiLMExCx3
Lateromedial extrastriate cortex layer 4ipsiLMExCxL43
Anterior part of the medial extrastriate cortexipsiVISMA3
Posterior part of the medial extrastriate cortexipsiVISMP3
Ventral orbital cortexipsiVO1
Ventrolateral orbital areaipsiVLO1
Dorsal geniculate nucleus lateral partipsiDLGl2
Geniculo-cortical relay neurons of the dorsal lateral geniculate nucleusipsiDLGlgcr3
Rostral third of the dorsal lateral geniculate nucleusipsiDLGlrt0
Caudal third of the dorsal lateral geniculate nucleusipsiDLGlct3
Middle of the rostrocaudal extent of the dorsal lateral geniculate nucleusipsiDLGlrcem1
Ventromedial region of the middle of the rostrocaudal extent of the dorsal lateral geniculate nucleusipsiDLGlrcemvm1.5
RetinacontraRET1.5
Area 17 area 18a border regioncontraVR1B2a0
Primary visual cortexcontraV12
Primary visual cortex layer 2contraV1L21
Primary visual cortex layer 3contraV1L31
Primary visual cortex layer 5contraV1L51
Primary visual cortex layer 6contraV1L61
Secondary visual cortex lateral areacontraV2L-0.5
Secondary visual cortex lateral area layer 2contraV2LL23
Secondary visual cortex lateral area layer 3contraV2LL33
Secondary visual cortex lateral area layer 5contraV2LL51
Secondary visual cortex lateral area layer 6contraV2LL61.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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