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Rat connectome
Primary visual cortex layer 6 left
Abbreviation
V1L6
Color
Superior regions
Primary visual cortex deep layers
Synonyms
Abbr.
Language
Primary visual cortex layer 6
V1L6
Subregions
Side
Middle layer of primary visual cortex layer 6
left
Primary visual cortex layer 6 cell populations
left
Primary visual cortex layer 6 lower part
left
Primary visual cortex layer 6 upper part
left
Output to
Name
Side
Abbr.
Weight
Details
Superior colliculus superficial layers
ipsi
SCs
3
Supericial layers of the rostromedial superior colliculus
ipsi
SCsRML
-0.5
Thalamus
ipsi
T
3
Anterior group of the dorsal thalamus
ipsi
ATN
3
Dorsal part of the lateral geniculate complex
ipsi
LGd
-0.5
Ventrolateral thalamic nucleus
ipsi
VL
3
Ventrobasal complex
ipsi
VB
3
Ventrobasal complex posterior part
ipsi
VBp
3
Lateral posterior thalamic nucleus
ipsi
LP
3
Lateral posterior thalamic nucleus caudal part
ipsi
LPca
2
Claustrum
ipsi
Cl
1
Dorsomedial striatum
ipsi
CPudm
1
Tail of the striatum
ipsi
CPuTa
-0.5
Frontal association cortex
ipsi
FrA
1
Frontal cortex area 1
ipsi
Fr1
0.5
Frontal cortex area 2
ipsi
Fr2
0.5
Parietal cortex posterior area
ipsi
ParP
1.5
Area 17 area 18 border region
ipsi
VR1B2
1.5
Area 17 area 18a border region
ipsi
VR1B2a
3
Primary visual cortex
ipsi
V1
3
Primary visual cortex lateral part
ipsi
V1La
-2
Primary visual cortex layer 1
ipsi
V1L1
3
Primary visual cortex layer 2
ipsi
V1L2
3
Primary visual cortex deeper half of layers 2 3
ipsi
V1L23d
3
Primary visual cortex layer 3 4 border
ipsi
V1L34
1
Primary visual cortex layer 3
ipsi
V1L3
3
Primary visual cortex layer 4
ipsi
V1L4
3
Primary visual cortex deep layers
ipsi
V1dL
3
Primary visual cortex layer 5
ipsi
V1L5
3
Middle layer of primary visual cortex
ipsi
V1L5m
2
Primary visual cortex layer 5 a
ipsi
V1L5a
-1
Top layer 5 of the primary visual cortex
ipsi
V1L5aT
2
Primary visual cortex layer 5 b
ipsi
V1L5b
1
Bottom layer of primary visual cortex
ipsi
V1L5bB
2
Primary visual cortex layer 6
ipsi
V1L6
3
Middle layer of primary visual cortex layer 6
ipsi
V1L6m
3
Primary visual cortex layer 6 lower part
ipsi
V1L6L
3
Primary visual cortex layer 6 upper part
ipsi
V1L6u
3
Primary visual cortex superficial layer 2 3
ipsi
V1L23s
1
Secondary visual cortex
ipsi
V2
-0.5
Secondary visual cortex medial area
ipsi
V2M
3
Secondary visual cortex medial area deep gray matter layers
ipsi
V2MdL
3
Secondary visual cortex lateral area
ipsi
V2L
3
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 1
ipsi
LMV2LL1
3
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 2
ipsi
LMV2LL2
3
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 3
ipsi
LMV2LL3
3
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 4
ipsi
LMV2LL4
3
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 5
ipsi
LMV2LL5
0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 6
ipsi
LMV2LL6
3
Secondary visual cortex lateral area supragranular layers
ipsi
V2LsgL
1
Secondary visual cortex lateral area infragranular layers
ipsi
V2LigL
3
Primary visual cortex monocular area
ipsi
V1M
-2
Anterolateral extrastriate cortex
ipsi
ALExCx
3
Posterior lateral extrastriate cortex
ipsi
VISPX
3
Lateromedial part of the lateral extrastriate cortex layer 5
ipsi
VISLLML5
0.5
Lateromedial part of the lateral extrastriate cortex layer 6
ipsi
VISLLML6
3
Lateromedial part of the lateral extrastriate cortex layer 3
ipsi
VISLLML3
3
Lateromedial part of the lateral extrastriate cortex layer 4
ipsi
VISLLML4
3
Lateromedial part of the lateral extrastriate cortex layer 1
ipsi
VISLLML1
3
Lateromedial part of the lateral extrastriate cortex layer 2
ipsi
VISLLML2
3
Lateromedial extrastriate cortex
ipsi
LMExCx
3
Posterior extrastriate cortex
ipsi
PExCx
3
Internal stratum of the white matter of the neocortex
ipsi
NEOCXis
-2
Dorsal geniculate nucleus lateral part
ipsi
DLGl
-0.5
Dorsal geniculate nucleus lateral part medial part
ipsi
DLGLM
3
Lateral geniculate complex
ipsi
LG
3
Dorsomedial tip of the dorsal part of the lateral geniculate complex
ipsi
LGDdmt
3
Medial geniculate nucleus
ipsi
MG
3
Visual regions
contra
VR
3
Area 17 area 18 border region
contra
VR1B2
3
Area 17 area 18a border region
contra
VR1B2a
3
Area 17 area 18a border region layer 5
contra
VR1B2aL5
3
Area 17 area 18a border region layer 6
contra
VR1B2aL6
3
Primary visual cortex
contra
V1
3
Primary visual cortex layer 1
contra
V1L1
1
Primary visual cortex layer 2
contra
V1L2
1
Primary visual cortex layer 3
contra
V1L3
1
Primary visual cortex layer 4
contra
V1L4
1
Primary visual cortex deep layers
contra
V1dL
3
Primary visual cortex layer 5
contra
V1L5
3
Primary visual cortex layer 6
contra
V1L6
3
Secondary visual cortex
contra
V2
3
Secondary visual cortex medial area deep gray matter layers
contra
V2MdL
1
Secondary visual cortex lateral area
contra
V2L
3
Secondary visual cortex lateral area infragranular layers
contra
V2LigL
1
Input from
Name
Side
Abbr.
Weight
Details
Superior colliculus
ipsi
SC
2
Basal forebrain
ipsi
BAF
3
Nucleus of the horizontal limb of the diagonal band
ipsi
HDB
3
Genu of diagonal band of Broca
ipsi
GDBB
2
Subpallidal substantia innominata
ipsi
SIsp
2
Magnocellular preoptic nucleus lateral part
ipsi
MCPOL
2
Dorsal part of the lateral geniculate complex
ipsi
LGd
3
Rhomboid thalamic nucleus
ipsi
Rh
1
Lateral posterior thalamic nucleus
ipsi
LP
2
Retina
ipsi
RET
1.5
Claustrum
ipsi
Cl
3
Globus pallidus
ipsi
GP
2
Hippocampus
ipsi
HIPP
-0.5
Entorhinal cortex
ipsi
Ent
0.5
Lateral entorhinal cortex
ipsi
LEnt
1.5
Frontal cortex area 2
ipsi
Fr2
2
Frontal cortex area 2 layer 5
ipsi
Fr2L5
1
Frontal cortex area 2 layer 6
ipsi
Fr2L6
2
Area 17 area 18b border region infragranular layers
ipsi
VR1B2RifgL
2
Primary visual cortex
ipsi
V1
3
Primary visual cortex lateral part
ipsi
V1La
-2
Primary visual cortex layer 2
ipsi
V1L2
2.5
Primary visual cortex layer 3
ipsi
V1L3
2.5
Primary visual cortex layer 4
ipsi
V1L4
-0.5
Primary visual cortex layer 5
ipsi
V1L5
3
Primary visual cortex layer 6
ipsi
V1L6
3
Primary visual cortex layer 6 lower part
ipsi
V1L6L
3
Primary visual cortex gray white border of layer 6
ipsi
V1L6Lgw
-0.5
Primary visual cortex layer 6 upper part
ipsi
V1L6u
1
Primary visual cortex white matter
ipsi
V1WM
-2
Secondary visual cortex layer 3
ipsi
V2L3
0
Secondary visual cortex layer 2
ipsi
V2L2
0
Secondary visual cortex medial area
ipsi
V2M
2
Secondary visual cortex medial area layer 3
ipsi
V2ML3
0
Secondary visual cortex medial area layer 2
ipsi
V2ML2
0
Secondary visual cortex medial area layer 5
ipsi
V2ML5
1.5
Secondary visual cortex medial area layer 6
ipsi
V2ML6
1.5
Secondary visual cortex medial area medial part
ipsi
V2MMe
-0.5
Secondary visual cortex anterior part of the medial area medial part
ipsi
V2MMea
-0.5
Secondary visual cortex lateral area
ipsi
V2L
2
Anterolateral area of subdivision 18a in lateral extrastriate cortex
ipsi
ALV2L
-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortex
ipsi
LMV2L
-0.5
Secondary visual cortex lateral area layer 2
ipsi
V2LL2
2
Secondary visual cortex lateral area layer 3
ipsi
V2LL3
2
Secondary visual cortex lateral area layer 6
ipsi
V2LL6
3
Primary visual cortex monocular area
ipsi
V1M
-2
Far lateral extrastriate cortex
ipsi
VISFL
-0.5
Lateromedial part of the lateral extrastriate cortex
ipsi
VISLLM
3
Lateromedial extrastriate cortex
ipsi
LMExCx
1.5
Lateromedial extrastriate cortex layer 4
ipsi
LMExCxL4
3
Anterior part of the medial extrastriate cortex
ipsi
VISMA
3
Posterior part of the medial extrastriate cortex
ipsi
VISMP
3
Dorsal geniculate nucleus lateral part
ipsi
DLGl
-0.5
Lateral geniculate complex
ipsi
LG
2
Retina
contra
RET
1.5
Frontal cortex area 2 layer 5
contra
Fr2L5
0.5
Frontal cortex area 2 layer 6
contra
Fr2L6
1
Temporal association cortex 1 layer 3
contra
TeAL3
1
Temporal association cortex 1 layer 2
contra
TeAL2
1
Area 17 area 18a border region
contra
VR1B2a
3
Primary visual cortex
contra
V1
2
Primary visual cortex layer 2
contra
V1L2
3
Primary visual cortex layer 3
contra
V1L3
3
Primary visual cortex layer 5
contra
V1L5
3
Primary visual cortex layer 6
contra
V1L6
3
Secondary visual cortex layer 3
contra
V2L3
0
Secondary visual cortex layer 2
contra
V2L2
0
Secondary visual cortex medial area layer 3
contra
V2ML3
0.5
Secondary visual cortex medial area layer 2
contra
V2ML2
0.5
Secondary visual cortex medial area layer 5
contra
V2ML5
1
Secondary visual cortex medial area layer 6
contra
V2ML6
1
Secondary visual cortex lateral area layer 2
contra
V2LL2
1
Secondary visual cortex lateral area layer 3
contra
V2LL3
1
Secondary visual cortex lateral area layer 6
contra
V2LL6
1.5
Key for weights
Value
Weight
-3
unknown
-2
fibers of passage
-1
not clear
-0.5
exists
0
not present
0.5
very light
1
light / sparse
1.5
light / moderate
2
moderate / dense
2.5
moderate / strong
3
strong
4
very strong
Homepage
|
Staff
|
neuroVIISAS
|
Rat connectome
|
Other connectomes
|
Neuroimaging
|
Neurodegeneration
|
Students
|
Links
|
Publications