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Rat connectome



Primary visual cortex layer 5 left


Abbreviation
V1L5
Color       
Superior regionsPrimary visual cortex deep layers

SynonymsAbbr.Language
Primary visual cortex layer 5V1L5 

SubregionsSide
Middle layer of primary visual cortexleft
Primary visual cortex layer 5 aleft
Primary visual cortex layer 5 bleft
Primary visual cortex layer 5 cell populationsleft
Primary visual cortex layer 5 cleft

Output to

NameSideAbbr.WeightDetails
Superior colliculusipsiSC3
Superior colliculus superficial layersipsiSCs3
Optic nerve layer of the superior colliculusipsiOp-0.5
Optic nerve layer of the superior colliculus deep partsipsiOpD0
Mediolateral extent of the optic gray layer of the superior colliculusipsiOpML1
Rostrocaudal extent of the optic gray layer of the superior colliculusipsiOpRC1
Superficial gray layer of the superior colliculusipsiSuG1
Superficial gray layer of the superior colliculus deep partsipsiSuGd3
Superior colliculus medial partipsimSC3
Supericial layers of the rostromedial superior colliculusipsiSCsRML-0.5
PonsipsiP1
Pons ventral partipsiPve-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Anterior group of the dorsal thalamusipsiATN3
Dorsal part of the lateral geniculate complexipsiLGd0
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB3
Ventrobasal complex posterior partipsiVBp3
Lateral posterior thalamic nucleusipsiLP3
Lateral posterior thalamic nucleus caudal partipsiLPca1
Laterodorsal thalamic nucleusipsiLD2
Reticular thalamic nucleusipsiRt0
Pretectal regionipsiPRT2
Anterior pretectal nucleusipsiAPT1
Posterior pretectal nucleusipsiPPT1
Pretectal region profund partipsiPRTp1
Dorsomedial striatumipsiCPudm-0.5
Dorsal region of caudal two thirds of the striatumipsiCPuDctt1
Tail of the striatumipsiCPuTa-0.5
Area 29ipsiA29-0.5
Parietal cortex posterior areaipsiParP3
Parietal cortex posterior area dorsal partipsiParPD2
Temporal association area 2 dorsal partipsiTe2D-0.5
Area 17 area 18 border regionipsiVR1B21
Area 17 area 18a border regionipsiVR1B2a3
Primary visual cortexipsiV13
Anterior part of the primary visual cortexipsiV1a3
Callosum projecting cellsipsiV1cc-0.5
Mediolateral part of the primary visual cortexipsiV1mL3
Primary visual cortex lateral partipsiV1La-2
Primary visual cortex layer 1ipsiV1L12
Primary visual cortex layer 2ipsiV1L22
Primary visual cortex deeper half of layers 2 3ipsiV1L23d3
Primary visual cortex layer 3 4 borderipsiV1L341
Primary visual cortex layer 3ipsiV1L32
Primary visual cortex layer 4ipsiV1L42
Primary visual cortex deep layersipsiV1dL1
Primary visual cortex layer 5ipsiV1L53
Middle layer of primary visual cortexipsiV1L5m3
Top layer 5 of the primary visual cortexipsiV1L5aT3
Bottom layer of primary visual cortexipsiV1L5bB3
Primary visual cortex layer 6ipsiV1L63
Middle layer of primary visual cortex layer 6ipsiV1L6m2
Primary visual cortex layer 6 lower partipsiV1L6L3
Primary visual cortex layer 6 upper partipsiV1L6u3
Primary visual cortex superficial layer 2 3ipsiV1L23s1
Rim region surrounding V1ipsiVRrim-0.5
Secondary visual cortexipsiV2-0.5
Secondary visual cortex medial areaipsiV2M3
Secondary visual cortex medial area deep gray matter layersipsiV2MdL1
Secondary visual cortex lateral areaipsiV2L3
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 1ipsiLMV2LL13
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 2ipsiLMV2LL23
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 3ipsiLMV2LL33
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 4ipsiLMV2LL43
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 5ipsiLMV2LL53
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 6ipsiLMV2LL63
Secondary visual cortex lateral area supragranular layersipsiV2LsgL1
Secondary visual cortex lateral area infragranular layersipsiV2LigL1
Primary visual cortex monocular areaipsiV1M-2
Anterolateral extrastriate cortexipsiALExCx3
Posterior lateral extrastriate cortexipsiVISPX3
Lateromedial part of the lateral extrastriate cortex layer 5ipsiVISLLML50.5
Lateromedial part of the lateral extrastriate cortex layer 6ipsiVISLLML63
Lateromedial part of the lateral extrastriate cortex layer 3ipsiVISLLML33
Lateromedial part of the lateral extrastriate cortex layer 4ipsiVISLLML43
Lateromedial part of the lateral extrastriate cortex layer 1ipsiVISLLML13
Lateromedial part of the lateral extrastriate cortex layer 2ipsiVISLLML23
Lateromedial extrastriate cortexipsiLMExCx3
Posterior extrastriate cortexipsiPExCx3
Internal stratum of the white matter of the neocortexipsiNEOCXis-2
Dorsal geniculate nucleus lateral partipsiDLGl3
Dorsal geniculate nucleus lateral part medial partipsiDLGLM3
Lateral geniculate complexipsiLG3
Ventral lateral geniculate nucleusipsiVLG3
Dorsomedial tip of the dorsal part of the lateral geniculate complexipsiLGDdmt3
Medial geniculate nucleusipsiMG3
Spinal cordipsiMES-0.5
Superior colliculus superficial layerscontraSCs0
Zona incertacontraZI2
Pretectal regioncontraPRT-0.5
Corpus callosumcontracc-0.5
Dorsomedial striatumcontraCPudm-0.5
Visual regionscontraVR3
Area 17 area 18a border regioncontraVR1B2a3
Area 17 area 18a border region layer 5contraVR1B2aL53
Area 17 area 18a border region layer 6contraVR1B2aL63
Primary visual cortexcontraV13
Primary visual cortex layer 1contraV1L11
Primary visual cortex layer 2contraV1L21
Primary visual cortex layer 3contraV1L31
Primary visual cortex layer 4contraV1L41
Primary visual cortex deep layerscontraV1dL1.5
Primary visual cortex layer 5contraV1L53
Primary visual cortex layer 6contraV1L63
Secondary visual cortexcontraV23
Secondary visual cortex medial areacontraV2M1
Secondary visual cortex lateral areacontraV2L3
Ventral lateral geniculate nucleuscontraVLG2
Orbicularis oculi musclecontraMuscOrbOc1

Input from

NameSideAbbr.WeightDetails
Superior colliculusipsiSC2
Basal forebrainipsiBAF3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Genu of diagonal band of BrocaipsiGDBB2
Subpallidal substantia innominataipsiSIsp2
Magnocellular preoptic nucleus lateral partipsiMCPOL2
Dorsal part of the lateral geniculate complexipsiLGd2
Lateral posterior thalamic nucleusipsiLP2
RetinaipsiRET1
ClaustrumipsiCl3
Globus pallidusipsiGP2
HippocampusipsiHIPP-0.5
Entorhinal cortexipsiEnt0.5
Retrosplenial agranular cortex layer 2ipsiRSAL21
Retrosplenial agranular cortex layer 3ipsiRSAL31
Frontal cortex area 1 layer 5bipsiFr1L5b0.5
Frontal cortex area 1 layer 6ipsiFr1L60.5
Frontal cortex area 1 layer 2ipsiFr1L20.5
Frontal cortex area 1 layer 3ipsiFr1L30.5
Frontal cortex area 2ipsiFr22
Frontal cortex area 2 layer 3ipsiFr2L31
Frontal cortex area 2 layer 2ipsiFr2L21
Frontal cortex area 2 layer 5ipsiFr2L51
Frontal cortex area 2 layer 5cipsiFr2L5c1
Frontal cortex area 2 layer 6ipsiFr2L62
Temporal association cortex 1 layer 3ipsiTeAL31
Temporal association cortex 1 layer 2ipsiTeAL21
Area 17 area 18b border region infragranular layersipsiVR1B2RifgL2
Primary visual cortexipsiV13
Primary visual cortex lateral partipsiV1La-2
Primary visual cortex layer 2ipsiV1L23
Primary visual cortex layer 3ipsiV1L33
Primary visual cortex layer 4ipsiV1L4-0.5
Primary visual cortex layer 5ipsiV1L53
Primary visual cortex layer 6ipsiV1L63
Primary visual cortex gray white border of layer 6ipsiV1L6Lgw-0.5
Primary visual cortex layer 6 upper partipsiV1L6u3
Secondary visual cortex medial areaipsiV2M3
Secondary visual cortex medial area layer 4ipsiV2ML40
Secondary visual cortex medial area layer 3ipsiV2ML33
Secondary visual cortex medial area layer 2ipsiV2ML23
Secondary visual cortex medial area layer 5ipsiV2ML52
Secondary visual cortex medial area layer 6ipsiV2ML61.5
Secondary visual cortex medial area medial partipsiV2MMe-0.5
Secondary visual cortex anterior part of the medial area medial partipsiV2MMea3
Secondary visual cortex lateral areaipsiV2L3
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Secondary visual cortex lateral area layer 4ipsiV2LL40
Secondary visual cortex lateral area layer 2ipsiV2LL23
Secondary visual cortex lateral area layer 3ipsiV2LL33
Secondary visual cortex lateral area layer 5ipsiV2LL52
Secondary visual cortex lateral area layer 6ipsiV2LL63
Primary visual cortex monocular areaipsiV1M-2
Far lateral extrastriate cortexipsiVISFL3
Lateromedial part of the lateral extrastriate cortexipsiVISLLM3
Lateromedial extrastriate cortexipsiLMExCx1.5
Lateromedial extrastriate cortex layer 4ipsiLMExCxL43
Anterior part of the medial extrastriate cortexipsiVISMA3
Posterior part of the medial extrastriate cortexipsiVISMP1
Ventral orbital cortexipsiVO1
Ventrolateral orbital areaipsiVLO1
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Lateral geniculate complexipsiLG2
RetinacontraRET1
Frontal cortex area 2 layer 5contraFr2L50.5
Frontal cortex area 2 layer 6contraFr2L61
Temporal association cortex 1 layer 3contraTeAL31
Temporal association cortex 1 layer 2contraTeAL21
Area 17 area 18 border region layer 2contraVR1B2L23
Area 17 area 18 border region layer 3contraVR1B2L33
Area 17 area 18 border region layer 4contraVR1B2L43
Area 17 area 18 border region layer 5contraVR1B2L53
Area 17 area 18 border region layer 6contraVR1B2L63
Area 17 area 18a border regioncontraVR1B2a3
Primary visual cortexcontraV12
Primary visual cortex layer 2contraV1L23
Primary visual cortex layer 3contraV1L33
Primary visual cortex layer 4contraV1L41
Primary visual cortex layer 5contraV1L53
Primary visual cortex layer 5 bcontraV1L5b3
Primary visual cortex layer 6contraV1L63
Primary visual cortex layer 6 upper partcontraV1L6u3
Secondary visual cortex medial area layer 3contraV2ML30.5
Secondary visual cortex medial area layer 2contraV2ML20.5
Secondary visual cortex medial area layer 5contraV2ML51
Secondary visual cortex medial area layer 6contraV2ML61
Secondary visual cortex lateral area layer 2contraV2LL23
Secondary visual cortex lateral area layer 3contraV2LL33
Secondary visual cortex lateral area layer 5contraV2LL51
Secondary visual cortex lateral area layer 6contraV2LL61.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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