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Rat connectome

Secondary visual cortex medial area layer 5 left

Abbreviation	V2ML5
Color
Superior regions	Secondary visual cortex medial area deep gray matter layers

Synonyms	Abbr.	Language
Secondary visual cortex medial area layer 5	V2ML5

Subregions	Side
Secondary visual cortex medial area upper part of layer 5	left
Secondary visual cortex medial area deeper part of layer 5	left
Secondary visual cortex medial area layer 5 pyramidal cells	left

Output to

Name	Side	Abbr.	Weight
Superior colliculus superficial layers	ipsi	SCs	3
Optic nerve layer of the superior colliculus deep parts	ipsi	OpD	0
Mediolateral extent of the optic gray layer of the superior colliculus	ipsi	OpML	1
Rostrocaudal extent of the optic gray layer of the superior colliculus	ipsi	OpRC	1
Superficial gray layer of the superior colliculus	ipsi	SuG	1
Superficial gray layer of the superior colliculus deep parts	ipsi	SuGd	3
Supericial layers of the rostromedial superior colliculus	ipsi	SCsRML	-0.5
Tegmental area	ipsi	TGA	0
Reticulotegmental nucleus	ipsi	RETn	0
Pontine nuclei	ipsi	Pn	2
Anterior group of the dorsal thalamus	ipsi	ATN	3
Ventrolateral thalamic nucleus	ipsi	VL	3
Ventrobasal complex	ipsi	VB	3
Ventrobasal complex posterior part	ipsi	VBp	3
Lateral posterior thalamic nucleus	ipsi	LP	3
Claustrum	ipsi	Cl	1
Entorhinal cortex	ipsi	Ent	3
Midrostrocaudal part of the retrosplenial dysgranular cortex	ipsi	RSdysmrc	1
Prelimbic cortex	ipsi	PrL	3
Frontal association cortex	ipsi	FrA	-0.5
Parietal cortex posterior area	ipsi	ParP	3
Parietal cortex posterior area lateral portion	ipsi	ParPL	-0.5
Parietal cortex posterior area medial portion	ipsi	mPPC	-0.5
Insular cortex	ipsi	ICX	3
Primary visual cortex	ipsi	V1	3
Primary visual cortex lateral part	ipsi	V1La	-0.5
Primary visual cortex layer 1	ipsi	V1L1	3
Primary visual cortex layer 2	ipsi	V1L2	2
Primary visual cortex layer 3	ipsi	V1L3	2
Primary visual cortex layer 4	ipsi	V1L4	2
Primary visual cortex deep layers	ipsi	V1dL	0
Primary visual cortex layer 5	ipsi	V1L5	2
Primary visual cortex layer 6	ipsi	V1L6	1.5
Primary visual cortex medial part	ipsi	V1Med	-0.5
Secondary visual cortex medial area supragranular layers	ipsi	V2MsgL	2
Secondary visual cortex medial area deep gray matter layers	ipsi	V2MdL	1
Secondary visual cortex lateral area	ipsi	V2L	-1
Secondary visual cortex lateral area supragranular layers	ipsi	V2LsgL	1
Secondary visual cortex lateral area infragranular layers	ipsi	V2LigL	1
Area between retrosplenial cortex and secondary visual cortex medial area	ipsi	RSCbV2m	3
Lateral geniculate complex	ipsi	LG	3
Ventral lateral geniculate nucleus	ipsi	VLG	-0.5
Medial geniculate nucleus	ipsi	MG	3
Pyramidal tract	ipsi	py	0.5
Superior colliculus superficial layers	contra	SCs	0
Pontine nuclei	contra	Pn	2
Area 17 area 18a border region	contra	VR1B2a	1
Primary visual cortex	contra	V1	3
Primary visual cortex lateral part	contra	V1La	3
Primary visual cortex deep layers	contra	V1dL	0
Primary visual cortex layer 5	contra	V1L5	1
Primary visual cortex layer 6	contra	V1L6	1
Visual cortical area 17 adjacent to area 18b	contra	V1V2b	1
Secondary visual cortex medial area	contra	V2M	3
Secondary visual cortex medial area supragranular layers	contra	V2MsgL	2
Secondary visual cortex lateral area	contra	V2L	3

Input from

Name	Side	Abbr.	Weight
Basal forebrain	ipsi	BAF	3
Diagonal band of Broca	ipsi	DBB	3
Nucleus of the horizontal limb of the diagonal band	ipsi	HDB	3
Genu of diagonal band of Broca	ipsi	GDBB	2
Subpallidal substantia innominata	ipsi	SIsp	2
Lateral preoptic area	ipsi	LPO	2
Magnocellular preoptic nucleus lateral part	ipsi	MCPOL	2
Lateral posterior thalamic nucleus	ipsi	LP	-0.5
Claustrum	ipsi	Cl	3
Globus pallidus	ipsi	GP	2
Frontal cortex area 2 rostral part	ipsi	Fr2R	1.5
Secondary visual cortex lateral area	ipsi	V2L	2
Ventral orbital cortex	ipsi	VO	1
Ventrolateral orbital area	ipsi	VLO	1
Dorsal geniculate nucleus lateral part	ipsi	DLGl	-0.5
Area 17 area 18a border region	contra	VR1B2a	-0.5

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong