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Rat connectome



Lateral septal nucleus intermediate part left


Abbreviation
LSI
Color       
Superior regionsLateral septal nucleus

SynonymsAbbr.Language
 LSi 
Lateral septal nucleus intermediate subdivision  
Lateral septum intermediate part Eng
Lateral septal nucleus intermediate partLSIEng
Lateral septal nucleus intermediateLSIEng

SubregionsSide
Lateral septal nucleus intermediate part layer 1left
Lateral septal nucleus intermediate part layer 2left
Lateral septal nucleus intermediate part layer 3left
Lateral septal nucleus intermediate part layer 4left
Lateral septal nucleus intermediate part ventral subdivisionleft
Lateral septal nucleus dorsomedial tip of the intermediate partleft
Lateral septal nucleus intermediate part anterior aspectleft
Lateral septal nucleus pars intermedia middle partleft
Lateral septal nucleus pars intermedia rostral partleft
Lateral septal nucleus caudal and intermediate levelleft
Dorsolateral subdivision of the lateral septal nucleus intermediate partleft
Dorsomedial subdivision of the lateral septal nucleus intermediate partleft
Lateral subdivision of the lateral septal nucleus intermediate partleft
Medial subdivision of the lateral septal nucleus intermediate partleft

Output to

NameSideAbbr.WeightDetails
Anteroposterior extension of the central gray mesencephalic partipsiCGMap3
Between anterior end of dorsal raphe and posterior ventral tegmental nucleus of the central gray mesencephalic partipsiCGMdrvtg3
Nucleus of DarkschewitschipsiDk3
Oculomotor nucleusipsi30
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray rostral partipsiPAGR3
Ventrolateral periaqueductal grayipsiVLPAG2
Ventral tegmental area A10ipsiVTA2
Paranigral nucleusipsiPN-2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Edinger Westphal nucleusipsiEW1
Paraflocculus ventral partipsiPFlv1
FlocculusipsiFl1
Nucleus incertusipsiNI2
Median raphe nucleusipsiMnR2
Paramedian raphe nucleusipsiPMnR-0.5
Pontine raphe nucleusipsiPnR-2
Diagonal band of Broca rostral partipsiDBBR1
Angular part of the ventral diagonal bandipsiVDBVA3
Ventrolateral part of the ventral diagonal bandipsiVDBVVL2
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the horizontal limb of the diagonal band medial partipsiHDBm2
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Diagonal band of Broca caudal partipsiDBBC3
Diagonal band of Broca middle portionipsiDBBmip3
Medial septal nucleusipsiMS0
Medial septal nucleus lateral partipsiMSLa1
Lateral preoptic areaipsiLPO-2
Medial preoptic areaipsiMPA3
Anterodorsal preoptic nucleusipsiADP-2
Medial preoptic nucleusipsiMPO1
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral zoneipsiLHA-2
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area medial partipsiLHAm4
Lateral hypothalamic area perifornical partipsiPFx4
Lateral hypothalamic nucleusipsiLHN-2
Lateral hypothalamic area intermediate partipsiLHim-0.5
Lateroanterior hypothalamic nucleusipsiLAH-2
Ventrolateral hypothalamic nucleusipsiVLH-2
Anterior hypothalamic areaipsiAHA-2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus anterior partipsiDMA1
Dorsomedial nucleus posterior partipsiDMHp0
Posterior hypothalamic areaipsiPHA3
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Posterior hypothalamic nucleusipsiPH3
Around the ventromedial and dorsomedial hypothalamic areasipsiaVMDM0
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Anteroventral periventricular nucleus 2ipsiAVPV21
Arcuate nucleusipsiArc-2
Paraventricular hypothalamic nucleusipsiPa-0.5
Border of the posterior magnocellular and medial parvocellular subdivision at mid-level of the rostrocaudal extentipsiPabPmmp2
Paraventricular hypothalamic nucleus magnocellular division posterior part caudal levelipsiPaMagPC2
Suprachiasmatic nucleusipsiSCh3
Nucleus properipsiSOnP3
Lateral mammillary nucleusipsiLM-2
Medial mammillary nucleusipsiMMn-2
Premammillary nucleus dorsal partipsiPMD-2
Premammillary nucleus ventral partipsiPMV2
Supramammillar nucleusipsiSuM-2
Supramammillar nucleus lateral partipsiSuML-2
Perifornical nucleusipsiPeF-2
Paraventricular thalamic nucleusipsiPV-2
Reuniens thalamic nucleusipsiRe-2
Subparafascicular thalamic nucleus caudal partipsiSPFc3
Subparafascicular thalamic nucleus medial partipsiSPFme3
Subparafascicular thalamic nucleus rostral partipsiSPFr3
Zona incertaipsiZI-2
Tuber cinereum areaipsiTC0
HabenulaipsiHAB0
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-2
Bed nucleus of the stria terminalis medial divisionipsiBSTM-2
Medial amygdaloid nucleusipsiMe-2
Ventral pallidumipsiVP-2
Accumbens nucleusipsiAc-2
Accumbens nucleus coreipsiAcbC2
Medial accumbens shellipsiAcbShm1
HippocampusipsiHIPP0
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL1
Medial agranular prefrontal cortexipsiAGm0
Precommissural nucleusipsiPrC-2
Interpeduncular nucleusipsiIP0
Paralambdoid septal nucleusipsiPLd-2
Anteroposterior extension of the central gray mesencephalic partcontraCGMap1
Between anterior end of dorsal raphe and posterior ventral tegmental nucleus of the central gray mesencephalic partcontraCGMdrvtg1
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray rostral partcontraPAGR-0.5
Ventrolateral periaqueductal graycontraVLPAG0
Nucleus incertuscontraNI-0.5
Median raphe nucleuscontraMnR0
Angular part of the ventral diagonal bandcontraVDBVA1
Ventrolateral part of the ventral diagonal bandcontraVDBVVL1
Nucleus of the horizontal limb of the diagonal band medial partcontraHDBm1
Medial septal nucleus lateral partcontraMSLa0.5
Medial preoptic nucleuscontraMPO0.5
Anterior hypothalamic areacontraAHA-2
Dorsomedial hypothalamic nucleus anterior partcontraDMA0
Dorsomedial nucleus posterior partcontraDMHp0
Midlateral posterior hypothalamic areacontraPHAmL-0.5
Posterior hypothalamic nucleuscontraPH2
Ventromedial hypothalamic nucleuscontraVMH0
Anteroventral periventricular nucleus 2contraAVPV20.5
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA4
Retrorubral nucleusipsiRR2
Laterodorsal tegmental nucleusipsiLDTg2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Edinger Westphal nucleusipsiEW3
Locus coeruleusipsiLC-1
Pontine tegmental fieldipsiPTF0.5
Parabrachial nucleusipsiPB1
Medullary reticular nucleus dorsal partipsiMdDd1
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal part non serotoninergic populationipsiDRCnsp3
Dorsal raphe nucleus dorsal part non serotoninergic populationipsiDRDnsp3
Dorsal raphe nucleus interfascicular part non serotoninergic populationipsiDRInsp3
Dorsal raphe nucleus lateral wing non serotoninergic populationipsiDRIwnsp3
Dorsal raphe nucleus midrostrocaudal part non serotoninergic populationipsiDRmrcnsp3
Dorsal raphe nucleus rostral part non serotoninergic populationipsiDRrnsp3
Dorsal raphe nucleus ventral part non serotoninergic populationipsiDRVnsp3
Dorsal raphe nucleus ventrolateral part non serotoninergic populationipsiDRVLnsp3
Median raphe nucleusipsiMnR3
Diagonal band of BrocaipsiDBB-0.5
Medial septal nucleusipsiMS-0.5
Substantia innominataipsiSI2
Intermediate hypothalamic cell groupsipsiIHCG3
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA3
Medial preoptic area dorsolateral partipsiMPADL3
Medial preoptic nucleusipsiMPO3
Vascular organ of the lamina terminalisipsiVOLT1
Dorsomedial hypothalamic nucleusipsiDMHy3
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anteriorposterior partipsiLHapo1
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic area ventral partipsiLHAvp2
Tuberal nucleusipsiTU2
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area central partipsiAHAC3
Anterior hypothalamic area medial partipsiAHAm3
Anterior hypothalamic area posterior partipsiAHAP4
Anterior hypothalamic nucleus ventromedial partipsiAHAvm2.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe3
Anterior hypothalamic nucleusipsiAHn3
Anterior part of the anterior hypothalamic nucleusipsiAHna1
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo3
Caudal subparaventricular zoneipsiCSuPZ2.5
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC3
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Ventromedial hypothalamic nucleus ventromedial partipsiVMHvm1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Paraventricular hypothalamic nucleusipsiPa2
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Paraventricular hypothalamic nucleus surrounding regionipsiPaSurr3
Periventricular hypothalamic nucleusipsiPe2.5
Suprachiasmatic nucleusipsiSCh1
Incerto hypothalamic areaipsiicHYPO-0.5
Supramammillar nucleus lateral partipsiSuML1.5
Perifornical nucleusipsiPeF2
Perifornical nucleus medial partipsiPeFM3
Basal retrochiasmatic areaipsiBRCh1
Retrochiasmatic area lateral partipsiRChL-0.5
Anterior group of the dorsal thalamusipsiATN1.5
Rhomboid thalamic nucleusipsiRh2
Medial group of the dorsal thalamusipsiMED2.5
Mediodorsal thalamic nucleusipsiMD2.5
Paraventricular thalamic nucleusipsiPV1.5
Reuniens thalamic nucleusipsiRe1
Posterior intralaminar thalamic nucleusipsiPIL2
Subparafascicular thalamic nucleusipsiSPF3
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Zona incertaipsiZI1.5
Medial habenular nucleusipsiMHb1.5
Anterior basomedial nucleusipsiBMA0.5
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr3
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt3
Posterolateral cortical nucleusipsiPLCo1
Medial amygdaloid nucleus anterodorsal partipsiMeAD2
Medial amygdaloid nucleus posterodorsal partipsiMePD1
Medial amygdaloid nucleus posteroventral partipsiMePV1
Globus pallidusipsiGP2
Ammon hornipsiAmH-1
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA1 of hippocampus ventral layer stratum pyramidal cellsipsiCA1vL3spc-0.5
Field CA1 of hippocampus septal poleipsiCA1sp2
Field CA2 of hippocampus layer stratum pyramidale pyramidal cellsipsiCA2L3spy-0.5
SubiculumipsiS-1
Subiculum dorsal proximal partipsiSdp-0.5
Subiculum ventral partipsiSv-0.5
Subiculum ventral distal partipsiSvd3
Presubiculum mid-septotemporal partipsiPrSmst-0.5
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt-0.5
Lateral entorhinal cortex layer 1ipsiLEntL1-0.5
Lateral entorhinal cortex layer 3ipsiLEntL3-0.5
Lateral entorhinal cortex layer 4ipsiLEntL4-0.5
Medial entorhinal cortexipsiMEnt-0.5
Medial entorhinal cortex layer 1ipsiMEntLyL1-0.5
Medial entorhinal cortex layer 3ipsiMEntLyL3-0.5
Medial entorhinal cortex layer 4ipsiMEntLyL4-0.5
Infralimbic cortexipsiIL1
Perirhinal cortex layer 1ipsiA35L1-0.5
Perirhinal cortex layer 2ipsiA35L2-0.5
Perirhinal cortex layer 3ipsiA35L3-0.5
Perirhinal cortex layer 4ipsiA35L4-0.5
Perirhinal cortex layer 5ipsiA35L5-0.5
Perirhinal cortex layer 6ipsiA35L6-0.5
Interpeduncular nucleusipsiIP2.5
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc-0.5
Lateral septal nucleus dorsal partipsiLSD-0.5
Ventral tegmental area A10contraVTA3
Medullary reticular nucleus dorsal partcontraMdDd1
Intermediate hypothalamic cell groupscontraIHCG-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Tuberal nucleuscontraTU1
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic area posterior partcontraAHAP3
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0.5
Dorsal hypothalamic areacontraDA-0.5
Ventromedial hypothalamic nucleuscontraVMH1
Ventromedial hypothalamic nucleus central partcontraVMHC1
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Perifornical nucleuscontraPeF-0.5
Anterior group of the dorsal thalamuscontraATN0
Medial group of the dorsal thalamuscontraMED0.5
Mediodorsal thalamic nucleuscontraMD0.5
Paraventricular thalamic nucleuscontraPV0
Medial habenular nucleuscontraMHb0
Globus palliduscontraGP0
Field CA1 of hippocampus septal polecontraCA1sp-0.5
Presubiculum mid-septotemporal partcontraPrSmst-0.5
Interpeduncular nucleuscontraIP1.5
ClitorisipsiOrgCLi2
VaginaipsiOrgVag2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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